24 research outputs found
Influence of the long-range corrections on the interfacial properties of molecular models using Monte Carlo simulation
We analyze the influence of the long-range corrections, due to the dispersive term of the intermolecular potential energy, on the surface tension using direct simulation of the vapour-liquid interface of different molecular models. Although several calculation methods have been proposed recently to compute the fluid-fluid interfacial properties, the truncation of the intermolecular potential or the use of the tail corrections represents a contribution relevant from a quantitative perspective. In this work, a simplified model for methane, namely a spherical Lennard-Jones intermolecular potential, has been considered first, and afterwards other models including rigid non polarizable structures with both Lennard-Jones sites and point electric charges, representing some of the most popular models to describe water (namely the original TIP4P model, and the TIP4P/Ew and TIP4P/2005 versions), and carbon dioxide (MSM, EPM2, TraPPE, and ZD models) have been studied. Our results show that for all cases tested, including those in which the electrostatic interactions may be predominant, an incomplete account of the long-range corrections produces a systematic underestimation of the computed interfacial tension.The authors acknowledge CESGA (www.cesga.es), for providing access to computing facilities, and Consellería de Educación e Ordenación Universitaria (Xunta de Galicia) and Ministerio de Ciencia e Innovación (Grant Nos. FIS2009- 07923, FIS2010-14866, and FIS2012-33621, and FPU Grant No. AP2007-02172 for J.M.M.), in Spain, for financial support. Further financial support from Proyecto de Excelencia de la Junta de Andalucía (Grant No. P07-FQM02884) and Universidad de Huelva are also acknowledged
On interfacial tension calculation from the test-area methodology in the grand canonical ensemble
We propose the extension of the test-area methodology, originally proposed to evaluate the surface tension of planar fluid-fluid interfaces along a computer simulation in the canonical ensemble, to deal with the solid-fluid interfacial tension of systems adsorbed on slitlike pores using the grand canonical ensemble. In order to check the adequacy of the proposed extension, we apply the method for determining the density profiles and interfacial tension of spherical molecules adsorbed in slitlike pore with different pore sizes and solid-fluid dispersive energy parameters along the same simulation. We also calculate the solid-fluid interfacial tension using the original test-area method in the canonical ensemble. Agreement between the results obtained from both methods indicate that both methods are fully equivalent. The advantage of the new methodology is that allows to calculate simultaneously the density profiles and the amount of molecules adsorbed onto a slitlike pore, as well as the solid- fluid interfacial tension. This ensures that the chemical potential at which all properties are evaluated during the simulation is exactly the same since simulations can be performed in the grand canonical ensemble, mimicking the conditions at which the adsorption experiments are most usually carried out in the laboratory.The authors would like to acknowledge helpful discussions with B. Mendiboure. This work was supported by Ministerio de Ciencia e Innovación (MICINN, Spain) through Grant Nos. FIS2010-14866, FIS2009-07923, and FPU Ref. AP2007-02172 (J.M.M.). Further financial support from Proyecto de Excelencia from Junta de Andalucía (Grant No. P07-FQM02884) and Universidad de Huelva are also acknowledged
An accurate density functional theory for the vaporliquid interface of chain molecules based on the statistical associating fluid theory for potentials of variable range for Mie chainlike fluids
A new Helmholtz free energy density functional is presented to predict the vapor-liquid interface of
chainlike molecules. The functional is based on the last version of the statistical associating fluid
theory for potentials of variable range for homogeneous Mie chainlike fluids (SAFT-VR Mie). Following
the standard formalism, the density functional theory (SAFT-VR Mie DFT) is constructed
using a perturbative approach in which the free energy density contains a reference term to describe
all the short-range interactions treated at the local level, and a perturbative contribution to
account for the attractive perturbation which incorporates the long-range dispersive interactions.
In this first work, we use a mean-field version of the theory in which the pair correlations are neglected
in the attractive term. The SAFT-VR Mie DFT formalism is used to examine the effect of
molecular chain length and the repulsive exponent of the intermolecular potential on density profiles
and surface tension of linear chains made up to six Mie (lr6) segments with different values
of the repulsive exponent of the intermolecular potential. Theoretical predictions from the theory
are compared directly with molecular simulation data for density profiles and surface tension of
Mie chainlike molecules taken from the literature. Agreement between theory and simulation data
is good for short-chain molecules at all thermodynamic conditions of coexistence considered.
Once the theory has proven that is able to predict the interfacial properties, and particularly interfacial
tension, the SAFT-VR Mie DFT formalism is used to predict the interfacial behavior of
two new coarse-grained models for carbon dioxide and water recently proposed in the literature.
In particular, the theoretical formalism, in combination with the coarse-grained models for carbon
dioxide and water, is able to predict the interfacial properties of these important substances in a
reasonable way.The authors thank helpful discussions with Carlos Avendaño andJosé Matías Garrido. We also acknowledge Centro de Supercom-putación de Galicia (CESGA, Santiago de Compostela, Spain) andMCIA (Mésocentre de Calcul Intensif Aquitain) of the Universitésde Bordeaux and Pau et Pays de l’Adour (France), for providingaccess to computing facilities and Ministerio de Economía, In-dustria y Competitividad through Grant with reference FIS2017-89361-C3-1-P co-financed by EU FEDER funds. Further financialsupport from Junta de Andalucía and Universidad de Huelva isalso acknowledged. J.A., J.M.M., and F.J.B. thankfully acknowl-edge the computer resources at Magerit and the technical supportprovided by the Spanish Supercomputing Network (RES) (ProjectQCM-2018-2-0042)
Adsorption and interfacial phenomena of a Lennard-Jones fluid adsorbed in slit pores: DFT and GCMC simulations
Confinement of fluids in porous media leads to the presence of solid–fluid (SF) interfaces that play a key role in many different fields. The experimental characterisation of SF interfacial properties, in par- ticular the surface tension, is challenging or not accessible. In this work, we apply mean-field density functional theory (DFT) to determine the surface tension and also density profile of a Lennard-Jones fluid in slit-shaped pores for realistic amounts of adsorbed molecules. We consider the pore walls to interact with fluid molecules through the well-known 10-4-3 Steele potential. The results are com- pared with those obtained from Monte Carlo simulations in the Grand Canonical Ensemble (GCMC) using the test-area method. We analyse the effect on the adsorption and interfacial phenomena of volume and energy factors, in particular, the pore diameter and the ratio between SF and fluid–fluid dispersive energy parameters, respectively. Results from DFT and GCMC simulations were found to be comparable, which points to their reliability.The authors would like to acknowledge helpful discussions with A. I. Moreno-Ventas Bravo. We also acknowledge Centro de Supercomputación de Galicia (CESGA, Santiago de Compostela, Spain) and MCIA (Mésocentre de Calcul Intensif Aquitain) of the Universités de Bordeaux and Pau et Pays de l’Adour (France), for providing access to computing facilities
Vapor-liquid interfacial properties of rigid-linear Lennard-Jones chains
We have obtained the interfacial properties of short rigid-linear chains formed from tangentially bonded Lennard-Jones monomeric units from direct simulation of the vapour-liquid interface. The full long-range tails of the potential are accounted for by means of an improved version of the inhomogeneous long-range corrections of Janecek [J. Phys. Chem. B 110, 6264–6269 (2006)] proposed recently by MacDowell and Blas [J. Chem. Phys. 131, 074705 (2009)] valid for spherical as well as for rigid and flexible molecular systems. Three different model systems comprising of 3, 4, and 5 monomers per molecule are considered. The simulations are performed in the canonical ensemble, and the vapor-liquid interfacial tension is evaluated using the test-area method. In addition to the sur- face tension, we also obtain density profiles, coexistence densities, critical temperature and density, and interfacial thickness as functions of temperature, paying particular attention to the effect of the chain length and rigidity on these properties. According to our results, the main effect of increasing the chain length (at fixed temperature) is to sharpen the vapor-liquid interface and to increase the width of the biphasic coexistence region. As a result, the interfacial thickness decreases and the sur- face tension increases as the molecular chains get longer. The surface tension has been scaled by critical properties and represented as a function of the difference between coexistence densities relative to the critical density.The authors would like to acknowledge helpful discus- sions with F. J. Martínez-Ruiz, E. de Miguel, C. Vega, and A. Galindo. This work was supported by Ministerio de Ciencia e Innovación (MICINN, Spain) through Grant Nos. FIS2010- 14866 (F.J.B.), FIS2009-07923 (J.M.M. and M.M.P.) and FIS2010-22047-C05-05 (L.G.M.D.). J.M.M. also acknowledges Ministerio de Ciencia e Innovación for the FPU Grant with reference AP2007-02172. Further financial support from Proyecto de Excelencia from Junta de Andalucía (Grant No. P07-FQM02884), Consellería de Educacion e Ordenacion Universitaria (Xunta de Galicia), Comunidad Autónoma de Madrid (Grant No. MODELICO-P2009/EPS-1691), and Universidad de Huelva are also acknowledged
Vapour–liquid interfacial properties of square-well chains from density functional theory and Monte Carlo simulation
The statistical associating fluid theory for attractive potentials of variable range (SAFT-VR) density functional theory (DFT) developed by [Gloor et al., J. Chem. Phys., 2004, 121, 12740–12759] is used to predict the interfacial behaviour of molecules modelled as fully-flexible square-well chains formed from tangentially-bonded monomers of diameter s and potential range l = 1.5s. Four different model systems, comprising 4, 8, 12, and 16 monomers per molecule, are considered. In addition to that, we also compute a number of interfacial properties of molecular chains from direct simulation of the vapour–liquid interface. The simulations are performed in the canonical ensemble, and the vapour– liquid interfacial tension is evaluated using the wandering interface (WIM) method, a technique based on the thermodynamic definition of surface tension. Apart from surface tension, we also obtain density profiles, coexistence densities, vapour pressures, and critical temperature and density, paying particular attention to the effect of the chain length on these properties. According to our results, the main effect of increasing the chain length (at fixed temperature) is to sharpen the vapour–liquid interface and to increase the width of the biphasic coexistence region. As a result, the interfacial thickness decreases and the surface tension increases as the molecular chains get longer. The interfacial thickness and surface tension appear to exhibit an asymptotic limiting behaviour for long chains. A similar behaviour is also observed for the coexistence densities and critical properties. Agreement between theory and simulation results indicates that SAFT-VR DFT is only able to predict qualitatively the interfacial properties of the model. Our results are also compared with simulation data taken from the literature, including the vapour–liquid coexistence densities, vapour pressures, and surface tension.Francisco José Martínez-Ruiz, Felipe J. Blas and A.Ignacio Moreno-Ventas Bravo acknowledge Ministerio de Economía y Competitividad of Spain for financial support from project FIS2013-49620-C2-1-P, co financed with EU Feder funds. We also acknowledge financial support from project number FIS2015-71749-REDT ‘‘Red de Simulación Molecular’’, Acciones de Dinamización Redes de Excelencia del Ministerio de Economía y Competitividad. Additional support from Universidad de Huelva and Junta de Andalucía is also acknowledged
An Examination of the Ternary Methane + Carbon Dioxide + Water Phase Diagram using the SAFT-VR Approach
In this work, the molecular based Variable Range Statistical Associating Fluid Theory (SAFT-VR) has been used to estimate the global phase equilibria diagram of the ternary mixture water + carbon dioxide + methane, over a wide pressure and temperature range. An accurate determination of the phase equilibria of this mixture is relevant in Petrophysics, as, for instance, in enhanced natural gas recovery from low permeability reservoirs (the so-called tight gas reservoirs), or in geology, as it is the basic composition of many geological fluids. A previous study on the phase behavior of the binary mixtures involved is presented, using in a transferable manner the characteristic molecular parameters for the three molecules involved. The ternary mixture presents a very rich and complex phase behavior, with a wide region of the thermodynamic space of phases (at higher pressures) presenting a large gap of ternary liquid!liquid equilibria, that upon descending pressures leads to the transition to a three-phase liquid!liquid!vapor equilibria region, and both regions are separated by a continuous critical end point line. The ability of the theory to describe this complex multicomponent mixture phase transition with a reduced and physically sound set of characteristic parameters must be underlined.J.M.M. and M.M.P. acknowledge Consellería de Educación e Ordenación Universitaria (Xunta de Galicia) and Ministerio de Ciencia e Innovación (Project Ref FIS2009-07923 and FPU Grant Ref AP2007-02172), in Spain, for financial support. F.J.B. also acknowledges financial support from Ministerio de Ciencia e Innovación (Project Ref FIS2010-14866). Additional support from Universidad de Huelva and Junta de Andalucía is also acknowledged.J.M.M. and M.M.P. acknowledge Consellería de Educación e Ordenación Universitaria (Xunta de Galicia) and Ministerio de Ciencia e Innovación (Project Ref FIS2009-07923 and FPU
Grant Ref AP2007-02172), in Spain, for financial support. F.J.B. also acknowledges financial support from Ministerio de Ciencia e Innovación
on (Project Ref FIS2010-14866). Additional support
from Universidad de Huelva and Junta de Andalucía is also acknowledged
Vapour–liquid phase equilibria and interfacial properties of fatty acid methyl esters from molecular dynamics simulations
We have determined the phase equilibria and interfacial properties of a methyl ester homologous series (from methyl acetate to methyl heptanoate) using direct simulations of the vapour–liquid interfaces. The methyl esters are modelled using the united atom approach in combination with transferable parameters for phase equilibria (TraPPE) force fields for alkanes, alkenes, carbon dioxide, ethers, and carboxylic acids in a transferable way. This allows us to take into account explicitly both dispersive and coulombic inter- actions, as well as the repulsive Pauli-exclusion interactions. Simulations are performed in the NVT or canonical ensemble using molecular dynamics. Vapour–liquid surface tension is determined using the virial route, i.e., evaluating the normal and tangential components of the pressure tensor along the simu- lation box. We have also calculated density profiles, coexistence densities, vapour pressures, surface entropies and enthalpies, and interfacial thickness as functions of temperature, as well as the normal boiling temperatures and the critical temperatures, densities, and pressures for each member of the series. Special attention is paid to the comparison between experimental data taken from the literature and our results obtained using molecular dynamics simulations. We also analyze the effect of increasing the molecular weight of the methyl esters (at fixed temperature) on all the properties considered, with special emphasis on phase equilibria envelopes and surface tension. The TraPPE force fields transferred from other molecules and chemical families are able to predict very accurately the experimental vapour–liquid phase envelopes of methyl esters. We also compare the results obtained from simulations of the surface tension, with experimental data taken from the literature. To our knowledge, this is the first time that vapour–liquid phase equilibria and interfacial properties, and particularly surface tension, of this methyl ester homologous series are obtained using computer simulation.The authors acknowledge the Centro de Supercomputación de Galicia (CESGA, Santiago de Compostela, Spain) for providing access to computing facilities, and Ministerio de Economía, Industria y Competitividad through the Grant with reference FIS2017-89361-C3-1-P co-financed by EU FEDER funds. A. M. acknowledges funding from Fondecyt (Chile) through Grant 1190107. Further financial support from Junta de Andalucía and Universidad de Huelva is also acknowledged. J. A. F. acknowledges Contrato Predoctoral de Investigación from XIX Plan Propio de Investigación de la Universidad de Huelva and an FPU Grant (Ref. FPU15/03754) from the Ministerio de Educación, Cultura y Deporte. J. A., J. M. M., P. G.-A., and F. J. B. thankfully acknowledge the computer resources at Magerit and the technical support provided by the Spanish Supercomputing Network (RES) (Project QCM-2018-2-0042)
Simulation of the carbon dioxide hydrate-water interfacial energy
Hypothesis: Carbon dioxide hydrates are ice-like nonstoichiometric inclusion solid compounds with
importance to global climate change, and gas transportation and storage. The thermodynamic and kinetic
mechanisms that control carbon dioxide nucleation critically depend on hydrate-water interfacial free
energy. Only two independent indirect experiments are available in the literature. Interfacial energies
show large uncertainties due to the conditions at which experiments are performed. Under these circumstances,
we hypothesize that accurate molecular models for water and carbon dioxide combined with
computer simulation tools can offer an alternative but complementary way to estimate interfacial energies
at coexistence conditions from a molecular perspective.
Calculations: We have evaluated the interfacial free energy of carbon dioxide hydrates at coexistence
conditions (three-phase equilibrium or dissociation line) implementing advanced computational
methodologies, including the novel Mold Integration methodology. Our calculations are based on the definition
of the interfacial free energy, standard statistical thermodynamic techniques, and the use of the
most reliable and used molecular models for water (TIP4P/Ice) and carbon dioxide (TraPPE) available
in the literature.
Findings: We find that simulations provide an interfacial energy value, at coexistence conditions, consistent
with the experiments from its thermodynamic definition. Our calculations are reliable since are based on the use of two molecular models that accurately predict: (1) The ice-water interfacial free
energy; and (2) the dissociation line of carbon dioxide hydrates. Computer simulation predictions provide
alternative but reliable estimates of the carbon dioxide interfacial energy. Our pioneering work demonstrates
that is possible to predict interfacial energies of hydrates from a truly computational molecular
perspective and opens a new door to the determination of free energies of hydrates.We thank Pedro J. Pérez for the critical reading of the manuscript.
We also acknowledge Centro de Supercomputación de Galicia
(CESGA, Santiago de Compostela, Spain) and MCIA (Mésocentre
de Calcul Intensif Aquitain) of the Universités de Bordeaux and Pau
et Pays de l’Adour (France) for providing access to computing facilities.
We thank financial support from the Ministerio de Economía,
Industria y Competitividad (FIS2017- 89361-C3-1-P), Junta de
Andalucía (P20-00363), and Universidad de Huelva (P.O. FEDER
UHU-1255522), all three cofinanced by EU FEDER funds. J.A.
acknowledges Contrato Predoctoral de Investigación from XIX Plan
Propio de Investigación de la Universidad de Huelva and a FPU
Grant (Ref. FPU15/03754) from Ministerio de Educación, Cultura
y Deporte. J. A., J. M. M., and F. J. B. thankfully acknowledge the
computer resources at Magerit and the technical support provided
by the Spanish Supercomputing Network (RES) (Project QCM-
2018–2- 0042). Funding for open access charge: Universidad de
Huelva / CBU
Treatment with tocilizumab or corticosteroids for COVID-19 patients with hyperinflammatory state: a multicentre cohort study (SAM-COVID-19)
Objectives: The objective of this study was to estimate the association between tocilizumab or corticosteroids and the risk of intubation or death in patients with coronavirus disease 19 (COVID-19) with a hyperinflammatory state according to clinical and laboratory parameters.
Methods: A cohort study was performed in 60 Spanish hospitals including 778 patients with COVID-19 and clinical and laboratory data indicative of a hyperinflammatory state. Treatment was mainly with tocilizumab, an intermediate-high dose of corticosteroids (IHDC), a pulse dose of corticosteroids (PDC), combination therapy, or no treatment. Primary outcome was intubation or death; follow-up was 21 days. Propensity score-adjusted estimations using Cox regression (logistic regression if needed) were calculated. Propensity scores were used as confounders, matching variables and for the inverse probability of treatment weights (IPTWs).
Results: In all, 88, 117, 78 and 151 patients treated with tocilizumab, IHDC, PDC, and combination therapy, respectively, were compared with 344 untreated patients. The primary endpoint occurred in 10 (11.4%), 27 (23.1%), 12 (15.4%), 40 (25.6%) and 69 (21.1%), respectively. The IPTW-based hazard ratios (odds ratio for combination therapy) for the primary endpoint were 0.32 (95%CI 0.22-0.47; p < 0.001) for tocilizumab, 0.82 (0.71-1.30; p 0.82) for IHDC, 0.61 (0.43-0.86; p 0.006) for PDC, and 1.17 (0.86-1.58; p 0.30) for combination therapy. Other applications of the propensity score provided similar results, but were not significant for PDC. Tocilizumab was also associated with lower hazard of death alone in IPTW analysis (0.07; 0.02-0.17; p < 0.001).
Conclusions: Tocilizumab might be useful in COVID-19 patients with a hyperinflammatory state and should be prioritized for randomized trials in this situatio