Neutrino, Neutron, and Cosmic Ray Production in the External Shock Model of Gamma Ray Bursts

The hypothesis that ultra-high energy (>~ 10^19 eV) cosmic rays (UHECRs) are accelerated by gamma-ray burst (GRB) blast waves is assumed to be correct. Implications of this assumption are then derived for the external shock model of gamma-ray bursts. The evolving synchrotron radiation spectrum in GRB blast waves provides target photons for the photomeson production of neutrinos and neutrons. Decay characteristics and radiative efficiencies of the neutral particles that escape from the blast wave are calculated. The diffuse high-energy GRB neutrino background and the distribution of high-energy GRB neutrino events are calculated for specific parameter sets, and a scaling relation for the photomeson production efficiency in surroundings with different densities is derived. GRBs provide an intense flux of high-energy neutrons, with neutron-production efficiencies exceeding ~ 1% of the total energy release. The radiative characteristics of the neutron beta-decay electrons from the GRB "neutron bomb" are solved in a special case. Galaxies with GRB activity should be surrounded by radiation halos of ~ 100 kpc extent from the outflowing neutrons, consisting of a nonthermal optical/X-ray synchrotron component and a high-energy gamma-ray component from Compton-scattered microwave background radiation. The luminosity of sources of GRBs and relativistic outflows in L* galaxies such as the Milky Way is at the level of ~10^40+-1 ergs/s. This is sufficient to account for UHECR generation by GRBs. We briefly speculate on the possibility that hadronic cosmic rays originate from the subset of supernovae that collapse to form relativistic outflows and GRBs. (abridged)Comment: 53 pages, 8 figures, ApJ, in press, 574, July 20, 2002. Substantial revision, previous Appendix expanded to ApJ, 556, 479; cosmic ray origin speculations to Heidelberg (astro-ph/001054) and Hamburg ICRC (astro-ph/0202254) proceeding

DNA Methylation Maintains Allele-specific KIR Gene Expression in Human Natural Killer Cells

Killer immunoglobulin-like receptors (KIR) bind self–major histocompatibility complex class I molecules, allowing natural killer (NK) cells to recognize aberrant cells that have down-regulated class I. NK cells express variable numbers and combinations of highly homologous clonally restricted KIR genes, but uniformly express KIR2DL4. We show that NK clones express both 2DL4 alleles and either one or both alleles of the clonally restricted KIR 3DL1 and 3DL2 genes. Despite allele-independent expression, 3DL1 alleles differed in the core promoter by only one or two nucleotides. Allele-specific 3DL1 gene expression correlated with promoter and 5′ gene DNA hypomethylation in NK cells in vitro and in vivo. The DNA methylase inhibitor, 5-aza-2′-deoxycytidine, induced KIR DNA hypomethylation and heterogeneous expression of multiple KIR genes. Thus, NK cells use DNA methylation to maintain clonally restricted expression of highly homologous KIR genes and alleles

N-band Imaging of Seyfert Nuclei and the MIR-X-ray correlation

We present new mid-infrared (N-band) images of a sample of eight nearby Seyfert galaxies. In all of our targets, we detect a central unresolved source, which in some cases has been identified for the first time. In particular, we have detected the mid-infrared emission from the active nucleus of NGC 4945, which previously remained undetected at any wavelength but hard X-rays. We also detect circumnuclear extended emission in the Circinus galaxy along its major axis, and find marginal evidence for extended circumnuclear emission in NGC 3281. The high spatial resolution (1.7") of our data allows us to separate the flux of the nuclear point sources from the extended circumnuclear starburst (if present). We complement our sample with literature data for a number of non-active starburst galaxies, and relate the nuclear N-band flux to published hard (2-10 kev) X-ray fluxes. We find tight and well-separated correlations between nuclear N-band flux and X-ray flux for both Seyfert and starburst nuclei which span over 3 orders of magnitude in luminosity. We demonstrate that these correlations can be used as a powerful classification tool for galactic nuclei. For example, we find strong evidence against NGC 1808 currently harbouring an active Seyfert nucleus based on its position in the mid-infrared-X-ray diagram. On the other hand, we confirm that NGC 4945 is in fact a Seyfert 2 galaxy.Comment: 31 pages, incl. 4 figures, uses AASTex. Replaced with accepted version after minor modifications. To appear in Ap

Estimating Historical Forest Density From Land‐Survey Data: A Response to Baker and Williams (2018)

In the Western United States, historical forest conditions are used to inform land management and ecosystem restoration goals (North et al. 2009, Stephens et al. 2016). This interest is based on the premise that historical forests were resilient to ecological disturbances (Keane et al. 2018). Researchers throughout the United States have used the General Land Office (GLO) surveys of the late 19th and early 20th centuries to estimate historical forest conditions (Bourdo 1956, Schulte and Mladenoff 2001, Cogbill et al. 2002, Paciorek et al. 2016). These surveys were conducted throughout the United States and represent a systematic, historical sample of trees across a broad geographic area. A challenge of using GLO survey data is the accurate estimation of tree density from sparse witness tree data. Levine et al. (2017) tested the accuracy and precision of four plotless density estimators that can be applied to GLO survey sample data, including the Cottam (Cottam and Curtis 1956), Pollard (Pollard 1971), Morisita (Morisita 1957), and mean harmonic Voronoi density (MHVD; Williams and Baker 2011) estimators. The Cottam, Pollard, and Morisita are count‐based plotless density estimators (PDE) and have a history of being applied to GLO data (e.g., Kronenfeld and Wang 2007, Rhemtulla et al. 2009, Hanberry et al. 2012, Maxwell et al. 2014, Goring et al. 2016). The MHVD estimator is an area‐based PDE that has been applied by the study\u27s authors to sites in the western United States (Baker 2012, 2014), but had not been independently evaluated. Levine et al. (2017) found that the Morisita estimator was the least biased and most precise estimator for estimating density from GLO survey data, with a relative root mean square error ranging from 0.11 to 0.78 for the six study sites. Levine et al. (2017) also demonstrated the MHVD approach consistently overestimated density from 16% to 258% in all six study areas that were analyzed

Workgroup Report: Review of Fish Bioaccumulation Databases Used to Identify Persistent, Bioaccumulative, Toxic Substances

Chemical management programs strive to protect human health and the environment by accurately identifying persistent, bioaccumulative, toxic substances and restricting their use in commerce. The advance of these programs is challenged by the reality that few empirical data are available for the tens of thousands of commercial substances that require evaluation. Therefore, most preliminary assessments rely on model predictions and data extrapolation. In November 2005, a workshop was held for experts from governments, industry, and academia to examine the availability and quality of in vivo fish bioconcentration and bioaccumulation data, and to propose steps to improve its prediction. The workshop focused on fish data because regulatory assessments predominantly focus on the bioconcentration of substances from water into fish, as measured using in vivo tests or predicted using computer models. In this article we review of the quantity, features, and public availability of bioconcentration, bioaccumulation, and biota–sediment accumulation data. The workshop revealed that there is significant overlap in the data contained within the various fish bioaccumulation data sources reviewed, and further, that no database contained all of the available fish bioaccumulation data. We believe that a majority of the available bioaccumulation data have been used in the development and testing of quantitative structure–activity relationships and computer models currently in use. Workshop recommendations included the publication of guidance on bioconcentration study quality, the combination of data from various sources to permit better access for modelers and assessors, and the review of chemical domains of existing models to identify areas for expansion

Low and High Ionization Absorption Properties of Mg II Absorption-Selected Galaxies at Intermediate Redshifts. II. Taxonomy, Kinematics, and Galaxies

[Abridged] We examine a sample of 45 Mg II absorption-selected systems over the redshift range 0.4 to 1.4. Mg II and Fe II absorption profiles were observed at a resolution of ~6 km/s with HIRES/Keck. Lyman-alpha and C IV data were measured in archival FOS/HST spectra (~230 km/s). We perform a multivariate analysis of W(MgII), W(FeII), W(CIV) and W(Lya) (rest-frame) equivalent widths and the Mg II kinematic spread. We find five categories of Mg II absorbers: "Classic", "C IV-deficient", "Single/Weak", "Double", and "DLA/HI-Rich". There is a strong connection between low-ionization kinematics and the location of an absorber on the W(CIV)-W(MgII) plane. In most absorbers a significant fraction of the C IV arises in a phase separate from Mg II. Many of the C IV profiles are resolved in the FOS spectra due to velocity structure.. For 16 galaxies, we compare the available absorption-line properties (taken from Churchill et al. 2000, Paper I) to the galaxy properties but find no significant (greater than 3-sigma) correlations, although several suggestive trends are apparent. We compare the locations of our intermediate redshift absorbers on the W(CIV)-W(MgII) plane with those of lower and higher redshift data taken from the literature and find evidence for evolution that is connected with the Mg II kinematics. We discuss the potential of using the above categorizations of absorbers to understand the evolution in the underlying physical processes giving rise to the gas and governing its ionization phases and kinematics.Comment: Accepted: The Astrophysical Journal; Work based upon data presented in Paper I [astro-ph/0005585

SS 433 : a phenomenon imitating a Wolf-Rayet star

We present mid-infrared (2-12 micron) spectra of the microquasar SS 433 obtained with the Infrared Space Observatory (spectroscopic mode of ISOPHOT and ISOCAM). We compare them to the spectra of four Wolf-Rayet stars: WR78, WR134, WR136, and WR147 in the same wavelength range. The mid-infrared spectrum of SS 433 mainly shows HI and HeI emission lines and is very similar to the spectrum of WR147, a WN8(h)+B0.5V binary. The 2-12 micron continuum emission of SS 433 corresponds to optically thin and partially optically thick free-free emission, from which we calculate a mass loss rate of 2-3 x 10^{-4} Msun/yr if the wind is homogeneous and a third of these values if it is clumped. This is consistent with a strong stellar wind from a WN star. However, following recent studies concluding that the mass donor star of SS 433 is not a Wolf-Rayet star, we propose that this strong wind out flows from a geometrically thick envelope of material that surrounds the compact object like a stellar atmosphere, imitating the Wolf-Rayet phenomenon. This wind could also wrap the mass donor star, and at larger distances (~ 40 AU), it might form a dust envelope from which the thermal emission, detected with ISOPHOT at 25 micron and 60 micron, would originate. This wind also probably feeds the material that is ejected in the orbital plane of the binary system and that forms the equatorial outflow detected in radio at distances > 100 AU.Comment: 12 pages, 6 figures (3 colour figures), accepted by A&A (in press

Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.

Tobacco and alcohol use are leading causes of mortality that influence risk for many complex diseases and disorders1. They are heritable2,3 and etiologically related4,5 behaviors that have been resistant to gene discovery efforts6-11. In sample sizes up to 1.2 million individuals, we discovered 566 genetic variants in 406 loci associated with multiple stages of tobacco use (initiation, cessation, and heaviness) as well as alcohol use, with 150 loci evidencing pleiotropic association. Smoking phenotypes were positively genetically correlated with many health conditions, whereas alcohol use was negatively correlated with these conditions, such that increased genetic risk for alcohol use is associated with lower disease risk. We report evidence for the involvement of many systems in tobacco and alcohol use, including genes involved in nicotinic, dopaminergic, and glutamatergic neurotransmission. The results provide a solid starting point to evaluate the effects of these loci in model organisms and more precise substance use measures

A Study of Time-Dependent CP-Violating Asymmetries and Flavor Oscillations in Neutral B Decays at the Upsilon(4S)

We present a measurement of time-dependent CP-violating asymmetries in neutral B meson decays collected with the BABAR detector at the PEP-II asymmetric-energy B Factory at the Stanford Linear Accelerator Center. The data sample consists of 29.7 ${\rm fb}^{-1}$ recorded at the $\Upsilon(4S)$ resonance and 3.9 ${\rm fb}^{-1}$ off-resonance. One of the neutral B mesons, which are produced in pairs at the $\Upsilon(4S)$, is fully reconstructed in the CP decay modes $J/\psi K^0_S$, $\psi(2S) K^0_S$, $\chi_{c1} K^0_S$, $J/\psi K^{*0}$ ($K^{*0}\to K^0_S\pi^0$) and $J/\psi K^0_L$, or in flavor-eigenstate modes involving $D^{(*)}\pi/\rho/a_1$ and $J/\psi K^{*0}$ ($K^{*0}\to K^+\pi^-$). The flavor of the other neutral B meson is tagged at the time of its decay, mainly with the charge of identified leptons and kaons. The proper time elapsed between the decays is determined by measuring the distance between the decay vertices. A maximum-likelihood fit to this flavor eigenstate sample finds $\Delta m_d = 0.516\pm 0.016 {\rm (stat)} \pm 0.010 {\rm (syst)} {\rm ps}^{-1}$. The value of the asymmetry amplitude $\sin2\beta$ is determined from a simultaneous maximum-likelihood fit to the time-difference distribution of the flavor-eigenstate sample and about 642 tagged $B^0$ decays in the CP-eigenstate modes. We find $\sin2\beta=0.59\pm 0.14 {\rm (stat)} \pm 0.05 {\rm (syst)}$, demonstrating that CP violation exists in the neutral B meson system. (abridged)Comment: 58 pages, 35 figures, submitted to Physical Review

Study of e+e- --> pi+ pi- pi0 process using initial state radiation with BABAR

The process e+e- --> pi+ pi- pi0 gamma has been studied at a center-of-mass energy near the Y(4S) resonance using a 89.3 fb-1 data sample collected with the BaBar detector at the PEP-II collider. From the measured 3pi mass spectrum we have obtained the products of branching fractions for the omega and phi mesons, B(omega --> e+e-)B(omega --> 3pi)=(6.70 +/- 0.06 +/- 0.27)10-5 and B(phi --> e+e-)B(phi --> 3pi)=(4.30 +/- 0.08 +/- 0.21)10-5, and evaluated the e+e- --> pi+ pi- pi0 cross section for the e+e- center-of-mass energy range 1.05 to 3.00 GeV. About 900 e+e- --> J/psi gamma --> pi+ pi- pi0 gamma events have been selected and the branching fraction B(J/psi --> pi+ pi- pi0)=(2.18 +/- 0.19)% has been measured.Comment: 21 pages, 37 postscript figues, submitted to Phys. Rev.