Modelling bark beetle disturbances in a large scale forest scenario model to assess climate change impacts and evaluate adaptive management strategies

To study potential consequences of climate-induced changes in the biotic disturbance regime at regional to national scale we integrated a model of Ips typographus (L. Scol. Col.) damages into the large-scale forest scenario model EFISCEN. A two-stage multivariate statistical meta-model was used to upscale stand level damages by bark beetles as simulated in the hybrid forest patch model PICUS v1.41. Comparing EFISCEN simulations including the new bark beetle disturbance module against a 15-year damage time series for Austria showed good agreement at province level (R² between 0.496 and 0.802). A scenario analysis of climate change impacts on bark beetle-induced damages in Austria¿s Norway spruce [Picea abies (L.) Karst.] forests resulted in a strong increase in damages (from 1.33 Mm³ a¿1, period 1990¿2004, to 4.46 Mm³ a¿1, period 2095¿2099). Studying two adaptive management strategies (species change) revealed a considerable time-lag between the start of adaptation measures and a decrease in simulated damages by bark beetle

Evaluation of a 3-D rockfall module within a forest patch model

Many slopes in the Alps are prone to rockfall and forests play a vital role in protecting objects such as (rail) roads and infrastructure against rockfall. Decision support tools are required to assess rockfall processes and to quantify the rockfall protection effect of forest stands. This paper presents results of an iterative sequence of tests and improvements of a coupled rockfall and forest dynamics model with focus on the rockfall module. As evaluation data a real-size rockfall experiment in the French Alps and two 2-D rockfall trajectories from Austria and Switzerland were used. Modification of the rebound algorithm and the inclusion of an algorithm accounting for the sudden halt of falling rocks due to surface roughness greatly improved the correspondence between simulated and observed key rockfall variables like run-out distances, rebound heights and jump lengths for the real-size rockfall experiment. Moreover, the observed jump lengths and run-out distances of the 2-D trajectories were well within the stochastic range of variation yielded by the simulations. Based on evaluation results it is concluded that the rockfall model can be employed to assess the protective effect of forest vegetation

Pollen-pistil interactions and self-incompatibility in the Asteraceae: new insights from studies of Senecio squalidus (Oxford ragwort)

Background Pollen-pistil interactions are an essential prelude to fertilization in angiosperms and determine compatibility/incompatibility. Pollen-pistil interactions have been studied at a molecular and cellular level in relatively few families. Self-incompatibility (SI) is the best understood pollen-pistil interaction at a molecular level where three different molecular mechanisms have been identified in just five families. Here we review studies of pollen-pistil interactions and SI in the Asteraceae, an important family that has been relatively understudied in these areas of reproductive biology. Scope We begin by describing the historical literature which first identified sporophytic SI (SSI) in species of Asteraceae, the SI system later identified and characterized at a molecular level in the Brassicaceae. Early structural and cytological studies in these two families suggested that pollen-pistil interactions and SSI were similar, if not the same. Recent cellular and molecular studies in Senecio squalidus (Oxford ragwort) have challenged this belief by revealing that despite sharing the same genetic system of SSI, the Brassicaceae and Asteraceae molecular mechanisms are different. Key cellular differences have also been highlighted in pollen-stigma interactions, which may arise as a consequence of the Asteraceae possessing a ‘semi-dry' stigma, rather than the ‘dry' stigma typical of the Brassicaceae. The review concludes with a summary of recent transcriptomic analyses aimed at identifying proteins regulating pollen-pistil interactions and SI in S. squalidus, and by implication the Asteraceae. The Senecio pistil transcriptome contains many novel pistil-specific genes, but also pistil-specific genes previously shown to play a role in pollen-pistil interactions in other species. Conclusions Studies in S. squalidus have shown that stigma structure and the molecular mechanism of SSI in the Asteraceae and Brassicaceae are different. The availability of a pool of pistil-specific genes for S. squalidus offers an opportunity to elucidate the molecular mechanisms of pollen-pistil interactions and SI in the Asteracea

Causes and consequences of large clonal assemblies in a poplar hybrid zone.

Asexual reproduction is a common and fundamental mode of reproduction in plants. Although persistence in adverse conditions underlies most known cases of clonal dominance, proximal genetic drivers remain unclear, in particular for populations dominated by a few large clones. In this paper, we studied a clonal population of the riparian tree Populus alba in the Douro river basin (northwestern Iberian Peninsula) where it hybridizes with P. tremula, a species that grows in highly contrasted ecological conditions. We used 73 nuclear microsatellites to test whether genomic background (species ancestry) is a relevant cause of clonal success, and to assess the evolutionary consequences of clonal dominance by a few genets. Additional Genotyping-by-Sequencing (GBS) data were produced to estimate the age of the largest clones. We found that a few ancient (over a few thousand years old) and widespread genets dominate the population, both in terms of clone size and number of sexual offspring produced. Interestingly, large clones possessed two genomic regions introgressed from P. tremula, which may have favored their spread under stressful environmental conditions. At the population level, the spread of large genets was accompanied by an overall ancient (>0.1 Myr) but soft decline of effective population size. Despite this decrease, and the high clonality and dominance of sexual reproduction by large clones, the Douro hybrid zone still displays considerable genetic diversity and low inbreeding. This suggests that, even in extreme cases as in the Douro, asexual and sexual dominance of a few large, geographically-extended individuals does not threaten population survival. This article is protected by copyright. All rights reserved

Genetic analysis of grape berries and raisins using microsatellite markers

Microsatellite markers have been used recently for the identification and pedigree analysis of grapevines with leaves and wood as sources of vine DNA. To identify grapes after harvest and their products, we applied DNA extraction protocols to grape berries and raisins. DNA was obtained from both sources, but that of raisins was highly degraded. The suitability of DNA for PCR amplification of single genetic loci was shown by amplification of 11 microsatellite markers. 18 commercially available table grape samples were genotyped, and 11 (61 %) matched the corresponding genetic profile in our reference database. Four samples were shown to be defined incorrectly and 4 samples did not match any of the generic profiles present in the database. The investigated raisins were found to be cv. Sultanina. The results demonstrate that DNA-based cultivar identification methods can be applied to harvested grapes and raisins

Genetic structure and introgression in riparian populations of Populus alba L.

White poplar (Populus alba) is a widespread species of the northern hemisphere. Introgressed populations or hybrid zones with the related species of the European aspen (Populus tremula) have been suggested as potential venues for the identification of functionally important variation for germplasm conservation, restoration efforts and tree breeding. Data on the genetic diversity and structure of introgressed P. alba are available only for sympatric populations from central Europe. Here, clonality, introgression and spatial genetic patterns were evaluated in three riparian populations of P. alba along the Ticino, Paglia-Tevere and Cesano river drainages in Italy. Samples of all three populations were typed for five nuclear microsatellite markers and 137 polymorphic amplified fragment length polymorphisms. Microsatellite-based inbreeding co-efficients (FIS) were significantly positive in all three populations. Genetic diversity was consistently highest in Ticino, the population with the highest level of introgression from P. tremula. Population differentiation (FST) was low between the Ticino valley in northern Italy and the Cesano valley in central Italy and between the central Italian populations of Cesano and Paglia-Tevere, consistent with a role of the Appenine mountain range as a barrier to gene flow between adjacent drainage areas. Introgression was not the primary determinant of within-population spatial genetic structure (SGS) in the studied populations

Adaptive introgression facilitate adaptation to high latitudes in European aspen (Populus tremula L.)

Understanding local adaptation has become a key research area given the ongoing climate challenge and the concomitant requirement to conserve genetic resources. Perennial plants, such as forest trees, are good models to study local adaptation given their wide geographic distribution, largely outcrossing mating systems and demographic histories. We evaluated signatures of local adaptation in European aspen (Populus tremula) across Europe by means of whole genome re-sequencing of a collection of 411 individual trees. We dissected admixture patterns between aspen lineages and observed a strong genomic mosaicism in Scandinavian trees, evidencing different colonization trajectories into the peninsula from Russia, Central and Western Europe. As a consequence of the secondary contacts between populations after the last glacial maximum (LGM), we detected an adaptive introgression event in a genome region of ∼500kb in chromosome 10, harboring a large-effect locus that has previously been shown to contribute to adaptation to the short growing seasons characteristic of northern Scandinavia. Demographic simulations and ancestry inference suggest an Eastern origin - probably Russian - of the adaptive Nordic allele which nowadays is present in a homozygous state at the north of Scandinavia. The strength of introgression and positive selection signatures in this region is a unique feature in the genome. Furthermore, we detected signals of balancing selection, shared across regional populations, that highlight the importance of standing variation as a primary source of alleles that facilitate local adaptation. Our results therefore emphasize the importance of migration-selection balance underlying the genetic architecture of key adaptive quantitative traits

Getting shot of elves: healing, witchcraft and fairies in the Scottish witchcraft trials

This paper re-examines the evidence of the Scottish witchcraft trials for beliefs associated by scholars with "elf-shot." Some supposed evidence for elf-shot is dismissed, but other material illuminates the interplay between illness, healing and fairy-lore in early modern Scotland, and the relationship of these beliefs to witchcraft itself