Optimization of Drinking Water and Sewer Hydraulic Management: Coupling of a Genetic Algorithm and Two Network Hydraulic Tools

AbstractVeolia has developed an optimization platform for the operation of sewer networks (POSTEVENT) and drinking water networks (OPTIM’HYDRO). This platform couples a genetic algorithm NSGA-II with hydraulic network simulation tools (INFOWORKS CS and EPANET). The challenge is to optimize the design and operation of networks according to given objectives and constraints, by changing asset control parameters. This article deals with optimization challenges raised and developed off-line support tools. It ends with a case study on a French drinking water network consisting in upscale set points for pumping stations to optimize the procurement management of water and reduce the energy costs

KLAST: fast and sensitive software to compare large genomic databanks on cloud

International audienceAs the genomic data generated by high throughput sequencing machines continue to exponentially grow, the need for very efficient bioinformatics tools to extract relevant knowledge from this mass of data doesn't weaken. Comparing sequences is still a major task in this discovering process, but tends to be more and more time-consuming. KLAST is a sequence comparison software optimized to compare two nucleotides or proteins data sets, typically a set of query sequences and a reference bank. Performances of KLAST are obtained by a new indexing scheme, an optimized seed-extend methodology, and a multi-level parallelism implementation. To scale up to NGS data processing, a Hadoop version has been designed. Experiments demonstrate a good scalability and a large speed-up over BLAST, the reference software of the domain. In addition, computation can be optionally performed on compressed data without any loss in performances

Usability improvements of the Thermipig model for precision pig farming

Pig livestock farming systems encounter several economic and environmental challenges, connected with meat price decrease, sanitary norms, emissions etc. To deal with these issues, methods and models to assess the performance of a pig production system have been developed. For instance, Thermipig model represents the pig fattening room and simulates performances of pigs at the batch level, taking into account interactions between the individual variability of pigs, farmer's practices, room characteristics and outdoor climate conditions. The model requires some static basic inputs fulfilled in several spreadsheets (such as rooms, pigs, and dietary characteristics) but also data files for voluminous variable inputs (such as outdoor temperature or climate control box parameters) for further modelling and outcome producing. This leads to challenges in data providing by the farmers and have to be improved. This paper deals with the implementation of the separate modules of the developed data warehouse system for usability improvements of the Thermipig model. The idea is to substitute input from the data files with online data input and automated variable processing by the model using the python script for connection to the remote data warehouse. The data warehouse system is extended with ‘Property Sets’ section dealing with all the operations that can be performed to a set of input variables. This approach demonstrates the ability of the data warehouse to act as data supplier for the remote model. As well the outcome of the model is also transferable back to the data warehouse for evaluation. This work is done within the Era-Net SuSan PigSys project - Improving pig system performance through a whole system approach

Image resonance in the many-body density of states at a metal surface

The electronic properties of a semi-infinite metal surface without a bulk gap are studied by a formalism that is able to account for the continuous spectrum of the system. The density of states at the surface is calculated within the GW approximation of many-body perturbation theory. We demonstrate the presence of an unoccupied surface resonance peaked at the position of the first image state. The resonance encompasses the whole Rydberg series of image states and cannot be resolved into individual peaks. Its origin is the shift in spectral weight when many-body correlation effects are taken into account

A novel family of diversified immunoregulatory receptors in teleosts is homologous to both mammalian Fc receptors and molecules encoded within the leukocyte receptor complex

Three novel and closely related leukocyte immune-type receptors (IpLITR) have been identified in channel catfish (Ictalurus punctatus). These receptors belong to a large polymorphic and polygenic subset of the Ig superfamily with members located on at least three independently segregating loci. Like mammalian and avian innate immune regulatory receptors, IpLITRs have both putative inhibitory and stimulatory forms, with multiple types coexpressed in various lymphoid tissues and clonal leukocyte cell lines. IpLITRs have an unusual and novel relationship to mammalian and avian innate immune receptors: the membrane distal Ig domains of an individual IpLITR are related to fragment crystallizable receptors (FcRs) and FcR-like proteins, whereas the membrane proximal Ig domains are related to several leukocyte receptor complex encoded receptors. This unique composition of Ig domains within individual receptors supports the hypothesis that functionally and genomically distinct immune receptor families found in tetrapods may have evolved from such ancestral genes by duplication and recombination events. Furthermore, the discovery of a large heterogeneous family of immunoregulatory receptors in teleosts, reminiscent of amphibian, avian, and mammalian Ig-like receptors, suggests that complex innate immune receptor networks have been conserved during vertebrate evolution. ELECTRONIC SUPPLEMENTARY MATERIAL: Supplementary material is available for this article at http://dx.doi.org/10.1007/s00251-006-0134-1 and is accessible for authorized users

Different resource allocation strategies result from selection for litter size at weaning in rabbit does

This study examined the effect of long-term selection of a maternal rabbit line, solely for a reproductive criterion, on the ability of female rabbits to deal with constrained environmental conditions. Female rabbits from generations 16 and 36 (n = 72 and 79, respectively) of a line founded and selected to increase litter size at weaning were compared simultaneously. Female rabbits were subjected to normal (NC), nutritional (NF) or heat (HC) challenging conditions from 1st to 3rd parturition. Animals in NC and NF were housed at normal room temperatures (18°C to 25°C) and respectively fed with control (11.6 MJ digestible energy (DE)/kg dry matter (DM), 126 g digestible protein (DP)/kg DM, and 168 g of ADF/kg DM) or low-energy fibrous diets (9.1 MJ DE/kg DM, 104 g DP/kg DM and 266 g ADF/kg DM), whereas those housed in HC were subjected to high room temperatures (25°C to 35°C) and the control diet. The litter size was lower for female rabbits housed in both NF and HC environments, but the extent and timing where this reduction took place differed between generations. In challenging conditions (NF and HC), the average reduction in the reproductive performance of female rabbits from generation 16, compared with NC, was &#8722;2.26 (P<0.05) and &#8722;0.51 kits born alive at 2nd and 3rd parturition, respectively. However, under these challenging conditions, the reproductive performance of female rabbits from generation 36 was less affected at 2nd parturition (&#8722;1.25 kits born alive), but showed a greater reduction at the 3rd parturition (&#8722;3.53 kits born alive; P<0.05) compared with NC. The results also showed differences between generations in digestible energy intake, milk yield and accretion, and use of body reserves throughout lactation in NC, HC and NF, which together indicate that there were different resource allocation strategies in the animals from the different generations. Selection to increase litter size at weaning led to increased reproductive robustness at the onset of an environmental constraint, but failure to sustain the reproductive liability when the challenge was maintained in the long term. This response could be directly related to the shortterm environmental fluctuations (less severe) that frequently occur in the environment where this line has been selected.The authors thank Professor Enrique Blas Ferrer for his valuable comments on the initial version of this document, Juan Carlos Moreno for his help in conducting the trial at the experimental farm, and the Ministry of Economy and Competitiveness (Project: AGL2011-30170-C02-01) for economic support.Savietto, D.; Cervera Fras, MC.; Ródenas Martínez, L.; Martínez Paredes, EM.; Baselga Izquierdo, M.; García Diego, FJ.; Larsen, T.... (2014). Different resource allocation strategies result from selection for litter size at weaning in rabbit does. Animal. 8(4):618-628. https://doi.org/10.1017/S1751731113002437S61862884García-Diego, F.-J., Pascual, J. J., & Marco, F. (2011). Technical Note: Design of a large variable temperature chamber for heat stress studies in rabbits. 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Livestock Science, 103(1-2), 65-73. doi:10.1016/j.livsci.2006.01.007Brecchia, G., Bonanno, A., Galeati, G., Federici, C., Maranesi, M., Gobbetti, A., … Boiti, C. (2006). Hormonal and metabolic adaptation to fasting: Effects on the hypothalamic–pituitary–ovarian axis and reproductive performance of rabbit does. Domestic Animal Endocrinology, 31(2), 105-122. doi:10.1016/j.domaniend.2005.09.006Piles, M., Garreau, H., Rafel, O., Larzul, C., Ramon, J., & Ducrocq, V. (2006). Survival analysis in two lines of rabbits selected for reproductive traits1. Journal of Animal Science, 84(7), 1658-1665. doi:10.2527/jas.2005-678Sanchez, J. P., Baselga, M., & Ducrocq, V. (2006). Genetic and environmental correlations between longevity and litter size in rabbits. Journal of Animal Breeding and Genetics, 123(3), 180-185. doi:10.1111/j.1439-0388.2006.00590.xQuevedo, F., Cervera, C., Blas, E., Baselga, M., & Pascual, J. J. (2006). 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