The relBE2Spn Toxin-Antitoxin System of Streptococcus pneumoniae: Role in Antibiotic Tolerance and Functional Conservation in Clinical Isolates

Type II (proteic) chromosomal toxin-antitoxin systems (TAS) are widespread in Bacteria and Archaea but their precise function is known only for a limited number of them. Out of the many TAS described, the relBE family is one of the most abundant, being present in the three first sequenced strains of Streptococcus pneumoniae (D39, TIGR4 and R6). To address the function of the pneumococcal relBE2Spn TAS in the bacterial physiology, we have compared the response of the R6-relBE2Spn wild type strain with that of an isogenic derivative, ΔrelB2Spn under different stress conditions such as carbon and amino acid starvation and antibiotic exposure. Differences on viability between the wild type and mutant strains were found only when treatment directly impaired protein synthesis. As a criterion for the permanence of this locus in a variety of clinical strains, we checked whether the relBE2Spn locus was conserved in around 100 pneumococcal strains, including clinical isolates and strains with known genomes. All strains, although having various types of polymorphisms at the vicinity of the TA region, contained a functional relBE2Spn locus and the type of its structure correlated with the multilocus sequence type. Functionality of this TAS was maintained even in cases where severe rearrangements around the relBE2Spn region were found. We conclude that even though the relBE2Spn TAS is not essential for pneumococcus, it may provide additional advantages to the bacteria for colonization and/or infection

A generalized Watterson estimator for next-generation sequencing: From trios to autopolyploids

International audienceSeveral variations of the Watterson estimator of variability for Next Generation Sequencing (NGS) data have been proposed in the literature. We present a unified framework for generalized Watterson estimators based on Maximum Composite Likelihood, which encompasses most of the existing estimators. We propose this class of unbiased estimators as generalized Watterson estimators for a large class of NGS data, including pools and trios. We also discuss the relation with the estimators that have been proposed in the literature and show that they admit two equivalent but seemingly different forms, deriving a set of combinatorial identities as a byproduct. Finally, we give a detailed treatment of Watterson estimators for single or multiple autopolyploid individuals

Terminological Approaches in the European Context

This volume provides a picture of state-of-the-art studies on terminology at the European level. Addressing a range of linguistic and cultural topics, it illustrates the diversity of terminological approaches, uses and solutions. A variety of national contexts and areas, from economics and law through to gender, environment and education, is explored to illustrate emerging national issues and practices in view of measuring and assessing them against European standards. The book discusses the selection of languages and cultural attitudes that characterize European Union countries, challenging and productive as they can be. It highlights the need to acknowledge differences in specific domains and the necessity to evaluate national policies (or indeed lack of policies) regarding terminological issues, and facilitate communication and dissemination of knowledge

Demography and population parameters of two species of eristaline flower flies (Diptera, Syrphidae, Eristalini)

The importance of eristaline flies (Diptera, Syrphidae, Eristalini) as pollinators in natural ecosystems and for agricultural crops is well known. However, in‐depth studies on the life cycle of most of these species have yet to be carried out. The aim of this research was to study the life cycle of Eristalis tenax (Linnaeus, 1758) and Eristalinus aeneus (Scopoli, 1763) in order to improve the current rearing system employed at the University of Alicante. The results were analysed using the age‐stage, two‐sex life table method. As one of the main results, the mean duration of the life history of E. tenax and E. aeneus was 46.06 and 65.12 days (d), respectively. The most critical step for both species was found at the beginning of the larval stage (first instar), when the highest mortality was recorded. Population parameters were also analysed and compared. The intrinsic rate of increase (r), the finite rate of increase (λ), the net reproductive rate (R0) and the mean generation time (T) were 0.09 (d−1), 1.09 (d−1), 42.11 offspring and 40.97 d, in the case of E. aeneus and 0.05 (d−1), 1.05 (d−1), 23.13 offspring and 59.23 d, in the case of E. tenax. These results indicate that the current rearing system is more efficient for E. aeneus, which displays a faster population growth. However, some modifications need to be implemented to improve the production of E. tenax.This manuscript was written as part of a PhD project, conducted by Andrés Campoy Pomares at the University of Alicante (Spain). The funds were provided by the Spanish Ministry of Education and Vocational Training (MEFP) as part of the FPU grant (FPU16-01985)

Hoverfly locomotor activity is resilient to external influence and intrinsic factors

Hoverflies are found across the globe, with approximately 6000 species described worldwide. Many hoverflies are being used in agriculture and some are emerging as model species for laboratory experiments. As such it is valuable to know more about their activity. Like many other dipteran flies, Eristalis hoverflies have been suggested to be strongly diurnal, but this is based on qualitative visualization by human observers. To quantify how hoverfly activity depends on internal and external factors, we here utilize a locomotor activity monitoring system. We show that Eristalis hoverflies are active during the entire light period when exposed to a 12 h light:12 h dark cycle, with a lower activity if exposed to light during the night. We show that the hoverflies' locomotor activity is stable over their lifetime and that it does not depend on the diet provided. Surprisingly, we find no difference in activity between males and females, but the activity is significantly affected by the sex of an accompanying conspecific. Finally, we show that female hoverflies are more resilient to starvation than males. In summary, Eristalis hoverflies are resilient to a range of internal and external factors, supporting their use in long-term laboratory experiments