The Northern Eurasia Earth Science Partnership: An Example of Science Applied to Societal Needs

Northern Eurasia, the largest landmass in the northern extratropics, accounts for ~20% of the global land area. However, little is known about how the biogeochemical cycles, energy and water cycles, and human activities specific to this carbon-rich, cold region interact with global climate. A major concern is that changes in the distribution of land-based life, as well as its interactions with the environment, may lead to a self-reinforcing cycle of accelerated regional and global warming. With this as its motivation, the Northern Eurasian Earth Science Partnership Initiative (NEESPI) was formed in 2004 to better understand and quantify feedbacks between northern Eurasian and global climates. The first group of NEESPI projects has mostly focused on assembling regional databases, organizing improved environmental monitoring of the region, and studying individual environmental processes. That was a starting point to addressing emerging challenges in the region related to rapidly and simultaneously changing climate, environmental, and societal systems. More recently, the NEESPI research focus has been moving toward integrative studies, including the development of modeling capabilities to project the future state of climate, environment, and societies in the NEESPI domain. This effort will require a high level of integration of observation programs, process studies, and modeling across disciplines

Clash of Titans: A MUSE dynamical study of the extreme cluster merger SPT-CL J0307-6225

We present MUSE spectroscopy, Megacam imaging, and Chandra X-ray emission for SPT-CL J0307-6225, a z = 0.58 major merging galaxy cluster with a large BCG-SZ centroid separation and a highly disturbed X-ray morphology. The galaxy density distribution shows two main overdensities with separations of 0.144 and 0.017 arcmin to their respective BCGs. We characterize the central regions of the two colliding structures, namely 0307-6225N and 0307-6225S, finding velocity derived masses of M200, N = 2.44 ± 1.41 × 1014M⊙ and M200, S = 3.16 ± 1.88 × 1014M⊙, with a line-of-sight velocity difference of |Δv| = 342 km s-1. The total dynamically derived mass is consistent with the SZ derived mass of 7.63 h70-1 ± 1.36 × 1014M⊙. We model the merger using the Monte Carlo Merger Analysis Code, estimating a merging angle of 36+14-12 ° with respect to the plane of the sky. Comparing with simulations of a merging system with a mass ratio of 1:3, we find that the best scenario is that of an ongoing merger that began 0.96+0.31-0.18 Gyr ago. We also characterize the galaxy population using Hδand [O ii] λ3727 Å lines. We find that most of the emission-line galaxies belong to 0307-6225S, close to the X-ray peak position with a third of them corresponding to red-cluster sequence galaxies, and the rest to blue galaxies with velocities consistent with recent periods of accretion. Moreover, we suggest that 0307-6225S suffered a previous merger, evidenced through the two equally bright BCGs at the centre with a velocity difference of ∼674 km s-1

Correlation of IDH1 Mutation with Clinicopathologic Factors and Prognosis in Primary Glioblastoma: A Report of 118 Patients from China

It has been reported that IDH1 (IDH1R132) mutation was a frequent genomic alteration in grade II and grade III glial tumors but rare in primary glioblastoma (pGBM). To elucidate the frequency of IDH1 mutation and its clinical significance in Chinese patients with pGBM, one hundred eighteen pGBMs were assessed by pyro-sequencing for IDH1 mutation status, and the results were correlated with clinical characteristics and molecular pathological factors. IDH1 mutations were detected in 19/118 pGBM cases (16.1%). Younger age, methylated MGMT promoter, high expression of mutant P53 protein, low expression of Ki-67 or EGFR protein were significantly correlated with IDH1 mutation status. Most notably, we identified pGBM cases with IDH1 mutation were mainly involved in the frontal lobe when compared with those with wild-type IDH1. In addition, Kaplan-Meier survival analysis revealed a highly significant association between IDH1 mutation and a better clinical outcome (p = 0.026 for progression-free survival; p = 0.029 for overall survival). However, in our further multivariable regression analysis, the independent prognostic effect of IDH1 mutation is limited when considering age, preoperative KPS score, extent of resection, TMZ chemotherapy, and Ki-67 protein expression levels, which might narrow its prognostic power in Chinese population in the future

A cytomorphological and immunohistochemical profile of aggressive B-cell lymphoma: high clinical impact of a cumulative immunohistochemical outcome predictor score

We analyzed morphological and immunohistochemical features in 174 aggressive B-cell lymphomas of nodal and extranodal origin. Morphological features included presence or absence of a follicular component and cytologic criteria according to the Kiel classification, whereas immunohistochemical studies included expression of CD10, BCL-2, BCL-6, IRF4/MUM1, HLA-DR, p53, Ki-67 and the assessment of plasmacytoid differentiation. Patients were treated with a CHOP-like regimen. While the presence or absence of either CD10, BCL-6 and IRF4/MUM1 reactivity or plasmacytoid differentiation did not identify particular cytomorphologic or site-specific subtypes, we found that expression of CD10 and BCL-6, and a low reactivity for IRF4/MUM1 were favourable prognostic indicators. In contrast, BCL-2 expression and presence of a monotypic cytoplasmic immunoglobulin expression was associated with an unfavourable prognosis in univariate analyses. Meta-analysis of these data resulted in the development of a cumulative immunohistochemical outcome predictor score (CIOPS) enabling the recognition of four distinct prognostic groups. Multivariate analysis proved this score to be independent of the international prognostic index. Such a cumulative immunohistochemical scoring approach might provide a valuable alternative in the recognition of defined risk types of aggressive B-cell lymphomas

Genomic deletion and promoter methylation status of Hypermethylated in Cancer 1 (HIC1) in mantle cell lymphoma

Mantle cell lymphomas (MCL), characterized by the t(11;14)(q13;q32), frequently carry secondary genetic alterations such as deletions in chromosome 17p involving the TP53 locus. Given that the association between TP53-deletions and concurrent mutations of the remaining allele is weak and based on our recent report that the Hypermethylated in Cancer 1 (HIC1) gene, that is located telomeric to the TP53 gene, may be targeted by deletions in 17p in diffuse large B-cell lymphoma (DLBCL), we investigated whether HIC1 inactivations might also occur in MCL. Monoallelic deletions of the TP53 locus were detected in 18 out of 59 MCL (31%), while overexpression of p53 protein occurred in only 8 out of 18 of these MCL (44%). In TP53-deleted MCL, the HIC1 gene locus was co-deleted in 11 out of 18 cases (61%). However, neither TP53 nor HIC1 deletions did affect survival of MCL patients. In most analyzed cases, no hypermethylation of the HIC1 exon 1A promoter was observed (17 out of 20, 85%). However, in MCL cell lines without HIC1-hypermethylation, the mRNA expression levels of HIC1 were nevertheless significantly reduced, when compared to reactive lymph node specimens, pointing to the occurrence of mechanisms other than epigenetic or genetic events for the inactivation of HIC1 in this entity

El estudio de las tolerancias térmicas para el examen de hipótesis biogeográficas y de la vulnerabilidad de los organismos ante el calentamiento global: ejemplos en anfíbios

La temperatura afecta de manera decisiva a las reacciones químicas que condicionan todos los procesos fisiológicos (Hochachka & Somero, 2002), determinando los patrones de distribución y abundancia de los organismos, así como numerosas interacciones ecológicas (Andrewartha & Birch, 1954; Dunson & Travis, 1991). Podemos, por tanto, afirmar que la temperatura, como componente abiótico fundamental, representa un factor selectivo de primer orden al influir en la supervivencia, crecimiento y dispersión de los organismos (Angiletta, 2009). El estudio de los rangos de tolerancia fisiológicos, especialmente los rangos térmicos, resulta imprescindible para comprender numerosos aspectos de la biología de los organismos, ya que representan las condiciones que limitan su nicho fundamental y, por tanto, su presencia y evolución en un determinado hábitat y área geográfica (Hutchinson, 1981; Kearney & Porter, 2009; Soberón & Nakamura, 2009; Townsend et al., 2011; Seebacher & Franklin, 2012). Se espera que las condiciones térmicas locales dirijan la evolución de los límites de tolerancia térmica, de su potencial plástico de aclimatación y en definitiva deriven en adaptaciones térmicas (Angiletta, 2009; Bozinovic et al., 2011). El interés por el estudio de la evolución y funcionalidad de estos límites térmicos es fuente de numerosas hipótesis biogeográficas y representa un elemento crucial en la determinación de la vulnerabilidad de las especies a los impactos del cambio climático.Fil: Tejedo, Miguel. Consejo Superior de Investigaciones Científicas; EspañaFil: Duarte, Helder. Consejo Superior de Investigaciones Científicas; EspañaFil: Guiérrez Pesquera, Luis M.. Consejo Superior de Investigaciones Científicas; EspañaFil: Beltran, Juan Francisco. Universidad de Sevilla; EspañaFil: Katzenberger, Marcos. Consejo Superior de Investigaciones Científicas; EspañaFil: Marangoni, Federico. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Universidad Nacional de Misiones; ArgentinaFil: Navas, Carlos Arturo. Universidade de Sao Paulo; BrasilFil: Nicieza, Alfredo G.. Universidad de Oviedo; EspañaFil: Relyea, Rick A.. University of Pittsburgh; Estados UnidosFil: Rezende, Enrico L.. Universitat Autònoma de Barcelona; EspañaFil: Richter Boix, Alex. University Uppsala; SueciaFil: Santos, Mauro. Universitat Autònoma de Barcelona; EspañaFil: Simon, Monique. Universidade de Sao Paulo; BrasilFil: Solé, Mirco. Universidade Estadual de Santa Cruz; Brasi

Ki-67 as a prognostic marker in mantle cell lymphoma—consensus guidelines of the pathology panel of the European MCL Network

Mantle cell lymphoma (MCL) has a heterogeneous clinical course and is mainly an aggressive B cell non-Hodgkin lymphoma; however, there are some indolent cases The Ki-67 index, defined by the percentage of Ki-67-positive lymphoma cells on histopathological slides, has been shown to be a very powerful prognostic biomarker. The pathology panel of the European MCL Network evaluated methods to assess the Ki-67 index including stringent counting, digital image analysis, and estimation by eyeballing. Counting of 2 × 500 lymphoma cells is the gold standard to assess the Ki-67 index since this value has been shown to predict survival in prospective randomized trials of the European MCL Network. Estimation by eyeballing and digital image analysis showed a poor concordance with the gold standard (concordance correlation coefficients [CCC] between 0.29 and 0.61 for eyeballing and CCC of 0.24 and 0.37 for two methods of digital image analysis, respectively). Counting a reduced number of lymphoma cells (2 × 100 cells) showed high interobserver agreement (CCC = 0.74). Pitfalls of the Ki-67 index are discussed and guidelines and recommendations for assessing the Ki-67 index in MCL are given

A joint SZ-X-ray-optical analysis of the dynamical state of 288 massive galaxy clusters

We use imaging from the first three years of the Dark Energy Survey to characterize the dynamical state of 288 galaxy clusters at $0.1 \lesssim z \lesssim 0.9$ detected in the South Pole Telescope (SPT) Sunyaev-Zeldovich (SZ) effect survey (SPT-SZ). We examine spatial offsets between the position of the brightest cluster galaxy (BCG) and the center of the gas distribution as traced by the SPT-SZ centroid and by the X-ray centroid/peak position from Chandra and XMM data. We show that the radial distribution of offsets provides no evidence that SPT SZ-selected cluster samples include a higher fraction of mergers than X-ray-selected cluster samples. We use the offsets to classify the dynamical state of the clusters, selecting the 43 most disturbed clusters, with half of those at $z \gtrsim 0.5$, a region seldom explored previously. We find that Schechter function fits to the galaxy population in disturbed clusters and relaxed clusters differ at $z>0.55$ but not at lower redshifts. Disturbed clusters at $z>0.55$ have steeper faint-end slopes and brighter characteristic magnitudes. Within the same redshift range, we find that the BCGs in relaxed clusters tend to be brighter than the BCGs in disturbed samples, while in agreement in the lower redshift bin. Possible explanations includes a higher merger rate, and a more efficient dynamical friction at high redshift. The red-sequence population is less affected by the cluster dynamical state than the general galaxy population.Comment: 21 pages, 12 Figures, 4 Tables. Accepted for publication in MNRA