CO2 leakage can cause loss of benthic biodiversity in submarine sands

One of the options to mitigate atmospheric CO2 increase is CO2 Capture and Storage in sub-seabed geological formations. Since predicting long-term storage security is difficult, different CO2 leakage scenarios and impacts on marine ecosystems require evaluation. Submarine CO2 vents may serve as natural analogues and allow studying the effects of CO2 leakage in a holistic approach. At the study site east of Basiluzzo Islet off Panarea Island (Italy), gas emissions (90-99% CO2) occur at moderate flows (80-120 Lm(-2) h(-1)). We investigated the effects of acidified porewater conditions (pH(T) range: 5.5-7.7) on the diversity of benthic bacteria and invertebrates by sampling natural sediments in three subsequent years and by performing a transplantation experiment with a duration of one year, respectively. Both multiple years and one year of exposure to acidified porewater conditions reduced the number of benthic bacterial operational taxonomic units and invertebrate species diversity by 30-80%. Reduced biodiversity at the vent sites increased the temporal variability in bacterial and nematode community biomass, abundance and composition. While the release from CO2 exposure resulted in a full recovery of nematode species diversity within one year, bacterial diversity remained affected. Overall our findings showed that seawater acidification, induced by seafloor CO2 emissions, was responsible for loss of diversity across different size-classes of benthic organisms, which reduced community stability with potential relapses on ecosystem resilience

Nutritional importance of benthic bacteria for deep-sea nematodes from the Arctic ice margin: Results of an isotope tracer experiment

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Impact of shallow‐water hydrothermal seepage on benthic biogeochemical cycling, nutrient availability, and meiobenthic communities in a tropical coral reef

We investigated the influence of high-CO2 hydrothermal seepage on element cycling, early diagenetic processes, and meiobenthic communities in sediments of a coral reef in Papua New Guinea. Based on fluid flow velocities, determined from temperature gradients, and element concentrations, the solute fluxes from the seeps were estimated, showing that seepage through sediments can be a source of nutrients but also of potentially toxic elements to the reef ecosystem. The sediment pore waters consisted of up to 36% hydrothermal fluids, enriched in As, Si, Li, Mn, Fe, Rb, and Cs relative to ambient seawater. During their ascent to the seabed, the acidic fluids reacted with the sediments, leading to increases in total alkalinity, nutrients, and alkali elements in the fluids. Mixing of hydrothermal fluids with seawater within the sediments lead to precipitation of redox-reactive species, including Fe-oxides, but the sediment pore waters were still a source of trace metals to the water column. Presence of the low-pH fluids in the sediments resulted in dissolution of sedimentary carbonates and left behind finer-grained volcanoclastic sands containing As, Cr, and Ni in concentrations toxic to biota. These finer-grained sediments had a reduced permeability, reducing the rate of remineralization of organic matter. Benthic meiofauna and nematode abundance and functional diversity were relatively lower at sites with hydrothermal seepage through the sediment. As benthic and pelagic processes are tightly coupled, it is likely that the changes in benthic biogeochemical processes due to sediment acidification will also affect epibenthic and pelagic communities

Community structure of deep fjord and shelf benthic fauna receiving different detrital kelp inputs in northern Norway

Kelp forests produce large amounts of macroalgal detritus, ranging from whole plants to small particles (1 mm). The role of this kelp detritus in fueling deep-sea communities adjacent to healthy kelp forests was investigated in a region in the north of Norway by comparing the community structure and biodiversity of meio-, macro-, and megafauna in two deep (450 m) areas with different expected input of kelp detritus: a deep fjord basin surrounded by kelp forests and the adjacent continental shelf 15 km offshore from the kelp forests. The results showed that, although the fjord received a significantly higher amount of large kelp detritus (i.e. blades) than the shelf area, the amount of small kelp detritus available on the sediment was similar in both areas. There were significant differences in the multidimensional scaling analyses on the community structure for meio-, macro-, and megafauna between the fjord and the shelf. Significant differences were also found in biomass, abundance and biodiversity indices for some groups. However, no clear pattern emerged in the community structure and biodiversity between the fjord and the shelf, and the observed differences could not be linked directly to kelp detritus availability. The similar amounts of small particles of kelp detritus in the fjord and shelf area suggest that kelp detritus can provide organic matter to ecosystems further away than initially hypothesized, thus potentially shaping the structure and functioning of deep benthic communities distant from the kelp forests. Yet, the direct (trophic) links of kelp detritus and the studied benthic fauna need to be further analysed. The results are discussed in relation to current global changes in kelp forest, including regime shifts from healthy kelp reefs to turfs or barren areas, which reduce drastically the amount of macroalgal detritus produced and exported.publishedVersio

Responses of an abyssal meiobenthic community to short-term burial with crushed nodule particles in the south-east Pacific

Increasing industrial metal demands due to rapid technological developments may drive the prospection and exploitation of deep-sea mineral resources such as polymetallic nodules. To date, the potential environmental consequences of mining operations in the remote deep sea are poorly known. Experimental studies are scarce, especially with regard to the effect of sediment and nodule debris depositions as a consequence of seabed mining. To elucidate the potential effects of the deposition of crushed polymetallic nodule particles on abyssal meiobenthos communities, a short (11 d) in situ experiment at the seafloor of the Peru Basin in the south-east Pacific Ocean was conducted in 2015. We covered abyssal, soft sediment with approx. 2 cm of crushed nodule particles and sampled the sediment after 11 d of incubation at 4200 m water depth. Short-term ecological effects on the meiobenthos community were studied including changes in their composition and vertical distribution in the sediment as well as nematode genus composition. Additionally, copper burden in a few similar-sized but randomly selected nematodes was measured by means of micro X-ray fluorescence (µXRF). At the end of the experiment, 46±1 % of the total meiobenthos occurred in the added crushed nodule layer, while abundances decreased in the underlying 2 cm compared to the same depth interval in undisturbed sediments. Densities and community composition in the deeper 2–5 cm layers remained similar in covered and uncovered sediments. The migratory response into the added nodule material was particularly seen in polychaetes (73±14 %, relative abundance across all depth layers) copepods (71±6 %), nauplii (61±9 %) and nematodes (43±1 %). While the dominant nematode genera in the added nodule material did not differ from those in underlying layers or the undisturbed sediments, feeding type proportions in this layer were altered, with a 9 % decrease of non-selective deposit feeders and an 8 % increase in epistrate feeders. Nematode tissue copper burden did not show elevated copper toxicity resulting from burial with crushed nodule particles. Our results indicate that burial with a 2 cm layer of crushed nodule particles induces changes in the vertical structure of meiobenthos inside the sediment and an alteration of nematode feeding type proportions within a short time frame of 11 d, while nematode tissue copper burden remains unchanged. These findings considerably contribute to the understanding of the short-term responses of meiobenthos to physical disturbances in the deep sea

Metabarcoding free-living marine nematodes using curated 18S and CO1 reference sequence databases for species-level taxonomic assignments

High‐throughput sequencing has the potential to describe biological communities with high efficiency yet comprehensive assessment of diversity with species‐level resolution remains one of the most challenging aspects of metabarcoding studies. We investigated the utility of curated ribosomal and mitochondrial nematode reference sequence databases for determining phylum‐specific species‐level clustering thresholds. We compiled 438 ribosomal and 290 mitochondrial sequences which identified 99% and 94% as the species delineation clustering threshold, respectively. These thresholds were evaluated in HTS data from mock communities containing 39 nematode species as well as environmental samples from Vietnam. We compared the taxonomic description of the mocks generated by two read‐merging and two clustering algorithms and the cluster‐free Dada2 pipeline. Taxonomic assignment with the RDP classifier was assessed under different training sets. Our results showed that 36/39 mock nematode species were identified across the molecular markers (18S: 32, JB2: 19, JB3: 21) in UClust_ref OTUs at their respective clustering thresholds, outperforming UParse_denovo and the commonly used 97% similarity. Dada2 generated the most realistic number of ASVs (18S: 83, JB2: 75, JB3: 82), collectively identifying 30/39 mock species. The ribosomal marker outperformed the mitochondrial markers in terms of species and genus‐level detections for both OTUs and ASVs. The number of taxonomic assignments of OTUs/ASVs was highest when the smallest reference database containing only nematode sequences was used and when sequences were truncated to the respective amplicon length. Overall, OTUs generated more species‐level detections, which were, however, associated with higher error rates compared to ASVs. Genus‐level assignments using ASVs exhibited higher accuracy and lower error rates compared to species‐level assignments, suggesting that this is the most reliable pipeline for rapid assessment of alpha diversity from environmental samples

Simulated leakage of high pCO2 water negatively impacts bivalve dominated infaunal communities from the Western Baltic Sea

Carbon capture and storage is promoted as a mitigation method counteracting the increase of atmospheric CO2 levels. However, at this stage, environmental consequences of potential CO2 leakage from sub-seabed storage sites are still largely unknown. In a 3-month-long mesocosm experiment, this study assessed the impact of elevated pCO2 levels (1,500 to 24,400 μatm) on Cerastoderma edule dominated benthic communities from the Baltic Sea. Mortality of C. edule was significantly increased in the highest treatment (24,400 μatm) and exceeded 50%. Furthermore, mortality of small size classes (0–1 cm) was significantly increased in treatment levels ≥6,600 μatm. First signs of external shell dissolution became visible at ≥1,500 μatm, holes were observed at >6,600 μatm. C. edule body condition decreased significantly at all treatment levels (1,500–24,400 μatm). Dominant meiofauna taxa remained unaffected in abundance. Densities of calcifying meiofauna taxa (i.e. Gastropoda and Ostracoda) decreased in high CO2 treatments (>6,600 μatm), while the non - calcifying Gastrotricha significantly increased in abundance at 24,400 μatm. In addition, microbial community composition was altered at the highest pCO2 level. We conclude that strong CO2 leakage can alter benthic infauna community composition at multiple trophic levels, likely due to high mortality of the dominant macrofauna species C. edule