Contact forces distribution for a granular material from a Monte Carlo study on a single grain

The force network ensemble is one of the most promising statistical descriptions of granular media, with an entropy accounting for all force configurations at mechanical equilibrium consistent with some external stress. It is possible to define a temperature-like parameter, the angoricity {\alpha}^{-1}, which under isotropic compression is a scalar variable. This ensemble is frequently studied on whole packings of grains; however, previous works have shown that spatial correlations can be neglected in many cases, opening the door to studies on a single grain. Our work develops a Monte Carlo method to sample the force ensemble on a single grain at constant angoricity on two and three-dimensional mono-disperse granular systems, both with or without static friction. The results show that, despite the steric exclusions and the constrictions of Coulomb's limit and repulsive normal forces, the pressure per grain always show a gamma distribution with scale parameter {\nu} = {\alpha}^{-1} and shape parameter k close to k', the number of degrees of freedom in the system. Moreover, the average pressure per grain fulfills an equipartition theorem =k'{\alpha}^{-1} in all cases (in close parallelism with the one for an ideal gas). These results suggest the existence of k' independent random variables (i.e. elementary forces) with identical exponential distributions as the basic elements for describing the force network ensemble at low angoricities under isotropic compression, in analogy with the volume ensemble of granular materials

Future Scenarios And Trends Of Energy Demand In Colombia Using Long-Range Energy Alternative Planning

The prospective of Colombia’s energy demand will be defined by economic, social, cultural and political phenomena. Modeling the factors that determine demand can be broadly divided into quantitative and qualitative. The quantitative phenomena, demography, energy efficiency and the direct consumption of fuels; qualitative effects are specific conditions, which are defined within each scenario as variables that will have effects on quantitative phenomena. In the baseline scenario, the transportation sector is expected to remain as the largest representative of Colombia’s energy demand, although its participation in the year 2050 will be reduced by approximately 7%. The residential sector will have a reduced growth supported by the law 1715 that will increase distributed generation and implement more efficient lighting systems. A scenario focused on energy diversification shows a reduction in demand since the short term. Transport sector is maintained with similar behaviors in all scenarios as the goods transport networks keep the same

A genomic approach highlights common and diverse effects and determinants of susceptibility on the yeast Saccharomyces cerevisiae exposed to distinct antimicrobial peptides

<p>Abstract</p> <p>Background</p> <p>The mechanism of action of antimicrobial peptides (AMP) was initially correlated with peptide membrane permeation properties. However, recent evidences indicate that action of a number of AMP is more complex and involves specific interactions at cell envelopes or with intracellular targets. In this study, a genomic approach was undertaken on the model yeast <it>Saccharomyces cerevisiae </it>to characterize the antifungal effect of two unrelated AMP.</p> <p>Results</p> <p>Two differentiated peptides were used: the synthetic cell-penetrating PAF26 and the natural cytolytic melittin. Transcriptomic analyses demonstrated distinctive gene expression changes for each peptide. Quantitative RT-PCR confirmed differential expression of selected genes. Gene Ontology (GO) annotation of differential gene lists showed that the unique significant terms shared by treatment with both peptides were related to the cell wall (CW). Assays with mutants lacking CW-related genes including those of MAPK signaling pathways revealed genes having influence on sensitivity to peptides. Fluorescence microscopy and flow cytometry demonstrated PAF26 interaction with cells and internalization that correlated with cell killing in sensitive CW-defective mutants such as Δ<it>ecm33 </it>or Δ<it>ssd1</it>. GO annotation also showed differential responses between peptides, which included ribosomal biogenesis, <it>ARG </it>genes from the metabolism of amino groups (specifically induced by PAF26), or the reaction to unfolded protein stress. Susceptibility of deletion mutants confirmed the involvement of these processes. Specifically, mutants lacking <it>ARG </it>genes from the metabolism of arginine pathway were markedly more resistant to PAF26 and had a functional CW. In the deletant in the arginosuccinate synthetase (<it>ARG1</it>) gene, PAF26 interaction occurred normally, thus uncoupling peptide interaction from cell killing. The previously described involvement of the glycosphingolipid gene <it>IPT1 </it>was extended to the peptides studied here.</p> <p>Conclusions</p> <p>Reinforcement of CW is a general response common after exposure to distinct AMP, and likely contributes to shield cells from peptide interaction. However, a weakened CW is not necessarily indicative of a higher sensitivity to AMP. Additional processes modulate susceptibility to specific peptides, exemplified in the involvement of the metabolism of amino groups in the case of PAF26. The relevance of the response to unfolded protein stress or the sphingolipid biosynthesis, previously reported for other unrelated AMP, was also independently confirmed.</p

Four-Legs D-STATCOM for Current Balancing in Low-Voltage Distribution Grids

The fast deployment of distributed energy resources (DERs) is creating a series of challenges that should be addressed in the coming years. In particular, distribution grids are playing an increasingly important role in the electricity system. Moreover, the three-phase four-wire structure of this network contribute to the appearance of imbalances and a series of problems derived from them. In this context, distribution system operators (DSOs), as the main responsible for the distribution grid, must ensure the quality of supply to consumers. This paper takes advantage of a four-legs D-STATCOM to remove current imbalances in low-voltage power lines. A 35-kVA prototype has been developed and installed in an urban distribution grid. The effect of the D-STATCOM has been analyzed during its first month of operation, studying and measuring the advantages of providing DERs the ability to perform active balancing to the utility grid. The results show a reduction in current imbalances from 21 % to 0 % and neutral current from 10.3 A to 0.4 A. In addition, a 13 % decrease in cable losses has been estimated and a slight improvement in voltage unbalance factor can be noted

Combinatorial gene therapy renders increased survival in cirrhotic rats

<p>Abstract</p> <p>Background</p> <p>Liver fibrosis ranks as the second cause of death in México's productive-age population. This pathology is characterized by acummulation of fibrillar proteins in hepatic parenchyma causing synthetic and metabolic disfunction. Remotion of excessive fibrous proteins might result in benefit for subjects increasing survival index. The goal of this work was to find whether the already known therapeutical effect of human urokinase Plasminogen Activator and human Matrix Metalloprotease 8 extends survival index in cirrhotic animals.</p> <p>Methods</p> <p>Wistar rats (80 g) underwent chronic intoxication with CCl₄: mineral oil for 8 weeks. Cirrhotic animals were injected with a combined dose of Ad-delta-huPA plus Ad-MMP8 (3 × 10¹¹and 1.5 × 10¹¹vp/Kg, respectively) or with Ad-beta-Gal (4.5 × 10¹¹) and were killed after 2, 4, 6, 8 and 10 days. Then, liver and serum were collected. An additional set of cirrhotic animals injected with combined gene therapy was also monitored for their probability of survival.</p> <p>Results</p> <p>Only the cirrhotic animals treated with therapeutical genes (Ad-delta-huPA+Ad-MMP-8) showed improvement in liver fibrosis. These results correlated with hydroxyproline determinations. A significant decrement in alpha-SMA and TGF-beta1 gene expression was also observed. Cirrhotic rats treated with Ad-delta-huPA plus Ad-MMP8 had a higher probability of survival at 60 days with respect to Ad-beta-Gal-injected animals.</p> <p>Conclusion</p> <p>A single administration of Ad-delta-huPA plus Ad-MMP-8 is efficient to induce fibrosis regression and increase survival in experimental liver fibrosis.</p

Calcium homeostasis plays important roles in the internalisation and activities of the small synthetic antifungal peptide PAF26

Fungal diseases are responsible for the deaths of over 1.5 million people worldwide annually. Antifungal peptides represent a useful source of antifungals with novel mechanisms-of-action, and potentially provide new methods of overcoming resistance. Here we investigate the mode-of-action of the small, rationally designed synthetic antifungal peptide PAF26 using the model fungus Neurospora crassa. Here we show that the cell killing activity of PAF26 is dependent on extracellular Ca2+ and the presence of fully functioning fungal Ca2+ homeostatic/signalling machinery. In a screen of mutants with deletions in Ca2+-signalling machinery, we identified three mutants more tolerant to PAF26. The Ca2+ ATPase NCA-2 was found to be involved in the initial interaction of PAF26 with the cell envelope. The vacuolar Ca2+ channel YVC-1 was shown to be essential for its accumulation and concentration within the vacuolar system. The Ca2+ channel CCH-1 was found to be required to prevent the translocation of PAF26 across the plasma membrane. In the wild type, Ca2+ removal from the medium resulted in the peptide remaining trapped in small vesicles as in the Δyvc-1 mutant. It is therefore apparent that cell killing by PAF26 is complex and unusually dependent on extracellular Ca2+ and components of the Ca2+-regulatory machinery

Transcriptomic identification of miR-205 target genes potentially involved in metastasis and survival of cutaneous malignant melanoma

Cutaneous melanoma is an aggressive neoplasm and is responsible for the majority of skin cancer deaths. Several miRNAs are involved in melanoma tumor progression. One of them is miR-205, the loss of which contributes to the development of melanoma metastasis. We evaluated whole-genome mRNA expression profiling associated with different miR-205 expression levels in melanoma cells. Differential expression analysis identified 243 differentially expressed transcripts including inositol polyphosphate 5'-phosphatase-like protein-1 (INPPL1) and BTB/POZ Domain-Containing Protein 3 (BTBD3). INPPL1 and BTBD3 were downregulated when melanoma cells expressed miR-205, indicating that these genes are potential miR-205 targets. Additionally, the target prediction algorithm TargetScan revealed that INPPL1 and BTBD3 genes had predicted target sites of miR-205 in their 3'UTRs and functional analysis demonstrated that these genes were directly linked to miR-205. Interestingly, our clinical data showed that INPPL1 was significantly associated with lymph node metastasis-free survival (LNMFS), distant metastasis-free survival (DMFS) and melanoma specific survival (MSS). This study supports INPPL1 as a miR-205 target gene and, therefore, that the involvement of miR-205 in the metastatic dissemination of malignant melanoma is, at least in part, via INPPL1

Fine-Tuning Tomato Agronomic Properties by Computational Genome Redesign

Considering cells as biofactories, we aimed to optimize its internal processes by using the same engineering principles that large industries are implementing nowadays: lean manufacturing. We have applied reverse engineering computational methods to transcriptomic, metabolomic and phenomic data obtained from a collection of tomato recombinant inbreed lines to formulate a kinetic and constraint-based model that efficiently describes the cellular metabolism from expression of a minimal core of genes. Based on predicted metabolic profiles, a close association with agronomic and organoleptic properties of the ripe fruit was revealed with high statistical confidence. Inspired in a synthetic biology approach, the model was used for exploring the landscape of all possible local transcriptional changes with the aim of engineering tomato fruits with fine-tuned biotechnological properties. The method was validated by the ability of the proposed genomes, engineered for modified desired agronomic traits, to recapitulate experimental correlations between associated metabolites

Comparative analysis of the sensitivity to distinct antimicrobials among Penicillium spp. causing fruit postharvest decay

The postharvest fungal pathogens Penicillium digitatum, P. italicum and P. expansum are an increasing problem for the Mediterranean orchards and fruit industry. This study was designed to gain knowledge on factors affecting susceptibility of Penicillium spp. to antimicrobial peptides (AMPs) as new antifungal compounds for plant protection. The previously characterized PAF26 is a novel penetratin-type AMP with activity against phytopathogenic fungi. Comparative analyses were conducted on the sensitivity of Penicillium spp. to PAF26, to the cytolytic peptide melittin and to other antimicrobials. The research included microscopic observations, chitin quantification, virulence assays on citrus and apple fruits, and molecular phylogenetic relationships within Penicillium isolates from citrus fruit. Virulence analysis and phylogenetic reconstruction confirmed the host specificity and monophyletic origin for P. digitatum, contrary to the closely-related species P. expansum and P. italicum. A parallelism was found between sensitivity to PAF26 of Penicillium isolates and to the chitin dye calcofluor white (CFW). No such correlation was found between sensitivity to PAF26 and to the membrane perturbing compound SDS or the oxidizing agent H2O2. Microscopy studies showed that mycelium and conidia from the PAF26-sensitive fungi were also prone to CFW staining, but no direct correlation with the mycelial chitin content was found. The data are consistent with the fact that fungal cell walls influence the outcome of the interaction of AMPs with fungi, and that PAF26 is more active towards Penicillium citrus fruit pathogens. In this context, CFW could help both to elucidate AMPs mode of action and in studies of the mechanisms of virulence and host specificity within Penicillium spp