Jasmonic acid contributes to rice resistance against Magnaporthe oryzae

Background The annual yield losses caused by the Rice Blast Fungus, Magnaporthe oryzae, range to the equivalent for feeding 60 million people. To ward off infection by this fungus, rice has evolved a generic basal immunity (so called compatible interaction), which acts in concert with strain-specific defence (so-called incompatible interaction). The plant-defence hormone jasmonic acid (JA) promotes the resistance to M. oryzae, but the underlying mechanisms remain elusive. To get more insight into this open question, we employ the JA-deficient mutants, cpm2 and hebiba, and dissect the JA-dependent defence signalling in rice for both, compatible and incompatible interactions. Results We observe that both JA-deficient mutants are more susceptible to M. oryzae as compared to their wild-type background, which holds true for both types of interactions as verified by cytological staining. Secondly, we observe that transcripts for JA biosynthesis (OsAOS2 and OsOPR7), JA signalling (OsJAZ8, OsJAZ9, OsJAZ11 and OsJAZ13), JA-dependent phytoalexin synthesis (OsNOMT), and JA-regulated defence-related genes, such as OsBBTI2 and OsPR1a, accumulate after fungal infection in a pattern that correlates with the amplitude of resistance. Thirdly, induction of defence transcripts is weaker during compatible interaction. Conclusion The study demonstrates the pivotal role of JA in basal immunity of rice in the resistance to M. oryzae in both, compatible and incompatible interactions

towards disruptions in earth observation new earth observation systems and markets evolution possible scenarios and impacts

Abstract This paper reviews the trends in Earth observation (EO) and the possible impacts on markets of the new initiatives, launched either by existing providers of EO data or by new players, privately funded. After a presentation of the existing models, the paper discusses the new approaches, addressing both commercial and institutional markets. New concepts for the very high resolution markets, in Europe and in the US, are the main focus of this analysis. Two complementary perspectives are summarised: on the one hand, the type of system and its operational performance and, on the other, the related business models, concepts of operation and ownership schemes. Until now, Earth observation systems for the most critical institutional needs are mainly dedicated assets owned and operated by governments or public organisations, often at national level. Even in the case of dual use missions, the governmental and commercial operations are in general fully segregated for the very high resolution satellites. Recent evolutions could affect this paradigm. Firstly, the increased performance of commercial satellites has a high degree of convergence with defence needs: 25–30 cm resolution is now the benchmark or at least a very short term target for commercial missions. The second evolution is the development of hybrid procurement schemes, combining proprietary missions and data buy framework contracts, partly triggered by the budgetary constraints of public customers, some failures in the execution of large spy satellites contracts and by the willingness to foster the competitiveness of industry on the export market. New space is another trend, which is more disruptive. This trend begun in the Silicon Valley and spread worldwide, arousing our expectations, sometimes excessively. This new model involves not only start-ups but also big web actors with substantial investment capacity. Both aim to transforming space into a commodity, taking benefit from the convergence between Information technology and EO. Beside the massive constellations for broadband Internet access, some initiatives have been launched for Earth observation markets, targeting high resolution and high revisit. Last but not least, more and more countries, the newcomers, invest in their own EO capacity, confirming the soft power dimension of space but also opening new opportunities for international or regional cooperation. As many unpredictable events may occur, even in a short time frame, the last part of the paper has a prospective dimension. Based on market trends and industrial stakes, it discusses the realism and likelihood of possible scenarios and identifies their impacts on the EO landscape and the main stakeholders involved, in particular in Europe: – The governmental and institutional actors, using Earth observation data for their operational missions, with an evolving balance between sovereign assets and external services. – The commercial operators of very high resolution satellites, with the new market opportunities and the possible emergence of worldwide champions. – The satellite manufacturers and their competitiveness. – The role of nations and space agencies, including the non-dependence or national sovereignty and international cooperation dimensions. Based on the comparison of three "radical" scenarios, the conclusion shows that there are opportunities for service providers and satellite manufacturers. Even without clear answer to the future industrial, technical and political structure of EO systems, relevant indicators to be monitored during the next three-five years are identified. The last section focuses on Europe and the role of institutions in order to support European champions and small and medium companies in the new worldwide competition

Oryza Tag Line, a phenotypic mutant database for the Génoplante rice insertion line library

To organize data resulting from the phenotypic characterization of a library of 30 000 T-DNA enhancer trap (ET) insertion lines of rice (Oryza sativa L cv. Nipponbare), we developed the Oryza Tag Line (OTL) database (http://urgi.versailles.inra.fr/OryzaTagLine/). OTL structure facilitates forward genetic search for specific phenotypes, putatively resulting from gene disruption, and/or for GUSA or GFP reporter gene expression patterns, reflecting ET-mediated endogenous gene detection. In the latest version, OTL gathers the detailed morpho-physiological alterations observed during field evaluation and specific screens in a first set of 13 928 lines. Detection of GUS or GFP activity in specific organ/tissues in a subset of the library is also provided. Search in OTL can be achieved through trait ontology category, organ and/or developmental stage, keywords, expression of reporter gene in specific organ/tissue as well as line identification number. OTL now contains the description of 9721 mutant phenotypic traits observed in 2636 lines and 1234 GUS or GFP expression patterns. Each insertion line is documented through a generic passport data including production records, seed stocks and FST information. 8004 and 6101 of the 13 928 lines are characterized by at least one T-DNA and one Tos17 FST, respectively that OTL links to the rice genome browser OryGenesDB

EuReCa ONE—27 Nations, ONE Europe, ONE Registry A prospective one month analysis of out-of-hospital cardiac arrest outcomes in 27 countries in Europe

AbstractIntroductionThe aim of the EuReCa ONE study was to determine the incidence, process, and outcome for out of hospital cardiac arrest (OHCA) throughout Europe.MethodsThis was an international, prospective, multi-centre one-month study. Patients who suffered an OHCA during October 2014 who were attended and/or treated by an Emergency Medical Service (EMS) were eligible for inclusion in the study. Data were extracted from national, regional or local registries.ResultsData on 10,682 confirmed OHCAs from 248 regions in 27 countries, covering an estimated population of 174 million. In 7146 (66%) cases, CPR was started by a bystander or by the EMS. The incidence of CPR attempts ranged from 19.0 to 104.0 per 100,000 population per year. 1735 had ROSC on arrival at hospital (25.2%), Overall, 662/6414 (10.3%) in all cases with CPR attempted survived for at least 30 days or to hospital discharge.ConclusionThe results of EuReCa ONE highlight that OHCA is still a major public health problem accounting for a substantial number of deaths in Europe.EuReCa ONE very clearly demonstrates marked differences in the processes for data collection and reported outcomes following OHCA all over Europe. Using these data and analyses, different countries, regions, systems, and concepts can benchmark themselves and may learn from each other to further improve survival following one of our major health care events

Altimetry for the future: Building on 25 years of progress

In 2018 we celebrated 25 years of development of radar altimetry, and the progress achieved by this methodology in the fields of global and coastal oceanography, hydrology, geodesy and cryospheric sciences. Many symbolic major events have celebrated these developments, e.g., in Venice, Italy, the 15th (2006) and 20th (2012) years of progress and more recently, in 2018, in Ponta Delgada, Portugal, 25 Years of Progress in Radar Altimetry. On this latter occasion it was decided to collect contributions of scientists, engineers and managers involved in the worldwide altimetry community to depict the state of altimetry and propose recommendations for the altimetry of the future. This paper summarizes contributions and recommendations that were collected and provides guidance for future mission design, research activities, and sustainable operational radar altimetry data exploitation. Recommendations provided are fundamental for optimizing further scientific and operational advances of oceanographic observations by altimetry, including requirements for spatial and temporal resolution of altimetric measurements, their accuracy and continuity. There are also new challenges and new openings mentioned in the paper that are particularly crucial for observations at higher latitudes, for coastal oceanography, for cryospheric studies and for hydrology. The paper starts with a general introduction followed by a section on Earth System Science including Ocean Dynamics, Sea Level, the Coastal Ocean, Hydrology, the Cryosphere and Polar Oceans and the ‘‘Green” Ocean, extending the frontier from biogeochemistry to marine ecology. Applications are described in a subsequent section, which covers Operational Oceanography, Weather, Hurricane Wave and Wind Forecasting, Climate projection. Instruments’ development and satellite missions’ evolutions are described in a fourth section. A fifth section covers the key observations that altimeters provide and their potential complements, from other Earth observation measurements to in situ data. Section 6 identifies the data and methods and provides some accuracy and resolution requirements for the wet tropospheric correction, the orbit and other geodetic requirements, the Mean Sea Surface, Geoid and Mean Dynamic Topography, Calibration and Validation, data accuracy, data access and handling (including the DUACS system). Section 7 brings a transversal view on scales, integration, artificial intelligence, and capacity building (education and training). Section 8 reviews the programmatic issues followed by a conclusion

Sensitivity of South American tropical forests to an extreme climate anomaly

The tropical forest carbon sink is known to be drought sensitive, but it is unclear which forests are the most vulnerable to extreme events. Forests with hotter and drier baseline conditions may be protected by prior adaptation, or more vulnerable because they operate closer to physiological limits. Here we report that forests in drier South American climates experienced the greatest impacts of the 2015–2016 El Niño, indicating greater vulnerability to extreme temperatures and drought. The long-term, ground-measured tree-by-tree responses of 123 forest plots across tropical South America show that the biomass carbon sink ceased during the event with carbon balance becoming indistinguishable from zero (−0.02 ± 0.37 Mg C ha −1 per year). However, intact tropical South American forests overall were no more sensitive to the extreme 2015–2016 El Niño than to previous less intense events, remaining a key defence against climate change as long as they are protected

Traitement percutané par Ethilbloc de kystes osseux anévrysmaux (série de 25 cas)

LYON1-BU Santé (693882101) / SudocSudocFranceF

Analyse biologique, génétique et moléculaire de la résistance partielle du riz à Magnaporthe oryzae

La résistance partielle aux agents pathogènes représente une source importante pour l'amélioration des plantes. Cependant les mécanismes moléculaires sous-jacents à ce type de résistance sont encore mal connus. L'interaction entre le riz et le champignon Magnaporthe oryzae est un modèle de choix pour ce type d'analyse, de nombreuses ressources génétiques et outils d'analyse fonctionnelle étant disponibles. Chez le riz, hormis le gène Pi21 qui contrôle la résistance partielle, aucune information biologique et fonctionnelle ne permet d'expliquer cette forme de résistance. En amont de ce travail de thèse, le phénomène de défense préformée a récemment été identifié ; il est défini par la corrélation entre l'expression des gènes liés à la défense avant infection et la résistance partielle à M. oryzae. L'identification de régulateurs de la résistance partielle et des défenses préformées a été l'objectif de cette thèse. Deux stratégies ont été adoptées. Une étude du transcriptome visant à sélectionner et caractériser des gènes candidats sur la base de leur profil d'expression constitutive a été réalisée. Une méthode de sélection par guilt-by-association s'est avérée efficace pour identifier des gènes impliqués dans la résistance de la plante. Les gènes AGO18, Z-BED, HSF23 et CaMBP ont été identifiés comme des régulateurs positifs des défenses de la plante. Les gènes HSF23 et CaMBP contrôlent l'expression constitutive des gènes liés à la défense mais leur sur-expression modifie la croissance des plantes. La sur-expression des gènes Z-BED et AGO18 n'a entraîné aucune modification de la croissance de la plante mais une augmentation de la résistance à M. oryzae, sans modification apparente de l'expression des gènes de défense testés. Le gène Z-BED code pour un facteur de transcription putatif dont on peut faire l'hypothèse qu'il contrôle un ensemble encore inconnu de l'arsenal de défense. Le gène AGO18 code pour une protéine argonaute potentiellement impliquée dans l'extinction de gène via la méthylation de la chromatine. Enfin le gène OB-fold est un régulateur négatif des défenses de la plante dont les cibles, potentiellement des ARN, restent à identifier.La deuxième approche a consisté en une détection de loci contrôlant la densité de lésions causées par M. oryzae. Une zone du génome, PRM1, contrôle ce phénotype, confère une résistance à un spectre de souches relativement large, semble contrôler l'expression de gènes de défense avant et au cours de l'infection, et enfin semble ralentir la croissance du champignon avant pénétration. Cette approche sans a priori renforce l'hypothèse que l'expression des gènes de défense avant infection est associée à la résistance partielle du riz à M. oryzae.De plus amples investigations seront nécessaires pour relier les phénotypes de résistance partielle tels que l'inhibition de la croissance pré-pénétration et la densité de lésions entre eux d'une part et d'autre part à l'expression des gènes de défenses avant infectionPartial resistance to pathogens is a major source for plant breeding. However, the molecular mechanisms underlying this type of resistance are still poorly understood. The interaction between rice and the fungus Magnaporthe oryzae is a model of choice for this type of analysis, many genetic and functional analysis tools being available. In rice, except for the Pi21 gene that controls partial resistance, no biological and functional information can explain this form of resistance. Prior to this thesis, the phenomenon of preformed defense has recently been identified; it is defined by the correlation between the expression of genes related to defense before infection and partial resistance to M. oryzae. Identification of partial resistance and preformed defense regulators has been the objective of this thesis. Two strategies were adopted.A transcriptome analysis to select and characterize candidate genes based on their constitutive expression pattern was performed. A method of selection by "guilt-by-association" has been effective in identifying genes involved in plant resistance. The genes AGO18, Z-BED, HSF23 and CaMBP were identified as positive regulators of plant defenses. The genes HSF23 and CaMBP control the constitutive expression of defense related genes, but their over-expression modifies plant growth. Over-expression of Z-BED and AGO18 genes does not affect plant growth but increases the resistance to M. oryzae, without apparent change in the expression of the defense genes tested. The Z-BED gene encodes for a putative transcription factor that likely controls an unknown set of the defense arsenal. The AGO18 gene encodes an Argonaute protein potentially involved in gene silencing via chromatin methylation. Finally the OB-fold gene is a negative plant defense regulator, and its hypothetical RNA targets remain to be identified.The second approach consisted of detection of loci controlling the lesions density caused by M. oryzae. A region of the genome, PRM1, controls this phenotype, confers resistance to a relatively wide range of isolates, appears to control the expression of defense genes before and during the infection, and finally seems to inhibit the growth of the fungus before penetration. This approach without a priori supports the hypothesis that the expression of defense genes before infection is associated with partial resistance of rice to M. oryzae.Further investigations are needed to link the resistance phenotypes such as partial inhibition of fungal growth pre-penetration and density of these lesions on the one hand, and the defense gene expression before infection on the other hand.MONTPELLIER-SupAgro La Gaillarde (341722306) / SudocSudocFranceF

Evaluation d'un automate multiparamètrique (l'UniCel DxI 800®)

Dans le cadre de l évaluation d un automate, l UniCel DxI 800®, nous avons étudié l autoimmunité gastrique, par le dosage des anticorps anti-facteur intrinsèque, chez des patients présentant des dysthyroïdies autoimmunes. Au plan analytique, les résultats du bilan thyroïdien ont été comparés à ceux obtenus avec les techniques radioimmunologiques du laboratoire et les résultats du dosage des anticorps anti-facteur intrinsèque à ceux obtenus avec trois techniques ELISA. Pour l ensemble du bilan thyroïdien, des discordances ont été observées entre les techniques pouvant affecter le diagnostic et le suivi thérapeutique des thyréopathies autoimmunes. Les discordances sont de 4,6% pour la TSH, 78% pour la T4l, 44% pour la T3l, 4% pour les anticorps anti-thyropéroxydase et 11% pour les anticorps anti-thyroglobuline, elles ne semblent pas liées à un problème analytique mais à des normes inadaptées pour le DxI®. L interprétation du dosage des anticorps anti-facteur intrinsèque diffère chez un tiers des patients suivant la technique de dosage, remettant en cause la place privilégiée, depuis la disparition du test de Schilling, de cet examen dans le diagnostic de la maladie de Biermer. Le type d anticorps détecté ainsi que la différence de sensibilité entre les techniques pouvant expliquer ces résultats. Au plan épidémiologique, la prévalence des anticorps anti-facteur intrinsèque déterminée sur le DxI® est statistiquement plus importante chez les patients dysthyroïdiens autoimmuns (3,5%) que chez les patients dysthyroïdiens non autoimmuns justifiant chez ces derniers le dépistage de la maladie de Biermer à condition de définir au préalable une démarche diagnostique consensuelle jusqu à présent absente.LIMOGES-BU Médecine pharmacie (870852108) / SudocLYON1-BU Santé (693882101) / SudocSudocFranceF