Self-organization, scaling and collapse in a coupled automaton model of foragers and vegetation resources with seed dispersal

We introduce a model of traveling agents ({\it e.g.} frugivorous animals) who feed on randomly located vegetation patches and disperse their seeds, thus modifying the spatial distribution of resources in the long term. It is assumed that the survival probability of a seed increases with the distance to the parent patch and decreases with the size of the colonized patch. In turn, the foraging agents use a deterministic strategy with memory, that makes them visit the largest possible patches accessible within minimal travelling distances. The combination of these interactions produce complex spatio-temporal patterns. If the patches have a small initial size, the vegetation total mass (biomass) increases with time and reaches a maximum corresponding to a self-organized critical state with power-law distributed patch sizes and L\'evy-like movement patterns for the foragers. However, this state collapses as the biomass sharply decreases to reach a noisy stationary regime characterized by corrections to scaling. In systems with low plant competition, the efficiency of the foraging rules leads to the formation of heterogeneous vegetation patterns with $1/f^{\alpha}$ frequency spectra, and contributes, rather counter-intuitively, to lower the biomass levels.Comment: 11 pages, 5 figure

Adaptation of flower and fruit colours to multiple, distinct 1 mutualists

Communication in plant–animal mutualisms frequently involves multiple perceivers. A fundamental uncertainty is whether and how species adapt to communicate with groups of mutualists having distinct sensory abilities. We quantified the colour conspicuousness of flowers and fruits originating from one European and two South American plant communities, using visual models of pollinators (bee and fly) and seed dispersers (bird, primate and marten). We show that flowers are more conspicuous than fruits to pollinators, and the reverse to seed dispersers. In addition, flowers are more conspicuous to pollinators than to seed dispersers and the reverse for fruits. Thus, despite marked differences in the visual systems of mutualists, flower and fruit colours have evolved to attract multiple, distinct mutualists but not unintended perceivers. We show that this adaptation is facilitated by a limited correlation between flower and fruit colours, and by the fact that colour signals as coded at the photoreceptor level are more similar within than between functional groups (pollinators and seed dispersers). Overall, these results provide the first quantitative demonstration that flower and fruit colours are adaptations allowing plants to communicate simultaneously with distinct groups of mutualists.Peer reviewe

Seed-specific transcription factor HSFA9 links late embryogenesis and early photomorphogenesis

HSFA9 is a seed-specific transcription factor that in sunflower (Helianthus annuus) is involved in desiccation tolerance and longevity. Here we show that the constitutive overexpression of HSFA9 in tobacco (Nicotiana tabacum) seedlings attenuated hypocotyl growth under darkness and accelerated the initial photosynthetic development. Plants overexpressing HSFA9 increased accumulation of carotenoids, chlorophyllide, and chlorophyll, and displayed earlier unfolding of the cotyledons. HSFA9 enhanced phytochrome-dependent light responses, as shown by an intensified hypocotyl length reduction after treatments with continuous far-red or red light. This observation indicated the involvement of at least two phytochromes: PHYA and PHYB. Reduced hypocotyl length under darkness did not depend on phytochrome photo-activation; this was inferred from the lack of effect observed using far-red light pulses applied before the dark treatment. HSFA9 increased the expression of genes that activate photomorphogenesis, including PHYA, PHYB, and HY5. HSFA9 might directly upregulate PHYA and indirectly affect PHYB transcription, as suggested by transient expression assays. Converse effects on gene expression, greening, and cotyledon unfolding were observed using a dominant-negative form of HSFA9, which was overexpressed under a seed-specific promoter. This work uncovers a novel transcriptional link, through HSFA9, between seed maturation and early photomorphogenesis. In all, our data suggest that HSFA9 enhances photomorphogenesis via early transcriptional effects that start in seeds under darkness

Seed-specific transcription factor HSFA9 links embryogenesis and photomorphogenesis

Poster presentado en la XIII Reunión de Biología Molecular de Plantas. Oviedo 22-24 de junio de 2016 Posler 14/ $IV P14HSFA9, a seed-specific factor, enhances the expression of light receptors and genes required for chlorophyll biosynthesis before germinating seeds are illuminated. HSFA9 subsequently augments phytochrome-mediated responses and stimulates seedling greening.This work has been funded by FEDER (European Regional Development Fund) and by “Secretaría de Estado de Investigación, Desarrollo e Innovación” (projects BIO2011-23440 and BIO2014-52303-R). Additional funds were obtained from “Junta de Andalucía” (Group BIO148).Peer reviewe

Frugivore species maintain their structural role in the trophic and spatial networks of seed dispersal interactions

1. Trophic relationships have inherent spatial dimensions associated with the sites where species interactions, or their delayed effects, occur. Trophic networks among interacting species may thus be coupled with spatial networks linking species and habitats whereby animals connect patches across the landscape thanks to their high mobility. This trophic and spatial duality is especially inherent in processes like seed dispersal by animals, where frugivores consume fruit species and deposit seeds across habitats. 2. We analysed the frugivore–plant interactions and seed deposition patterns of a diverse assemblage of frugivores in a heterogeneous landscape in order to determine whether the roles of frugivores in network topology are correlated across trophic and spatial networks of seed dispersal. 3. We recorded fruit consumption and seed deposition by birds and mammals during 2 years in the Cantabrian Range (N Spain). We then constructed two networks of trophic (i.e. frugivore–plant) and spatial (i.e. frugivore–seed deposition habitat) interactions and estimated the contributions of each frugivore species to the network structure in terms of nestedness, modularity and complementary specialization. We tested whether the structural role of frugivore species was correlated across the trophic and spatial networks, and evaluated the influence of each frugivore abundance and body mass in that relationship. 4. Both the trophic and the spatial networks were modular and specialized. Trophic modules matched medium-sized birds with fleshy-fruited trees, and small bird and mammals with small-fruit trees and shrubs. Spatial modules associated birds with woody canopies, and mammals with open habitats. Frugivore species maintained their structural role across the trophic and spatial networks of seed dispersal, even after accounting for frugivore abundance and body mass. 5. The modularity found in our system points to complementarity between birds and mammals in the seed dispersal process, a fact that may trigger landscape-scale secondary succession. Our results open up the possibility of predicting the consumption pattern of a diverse frugivore community, and its ecological consequences, from the uneven distribution of fleshy-fruit resources in the landscape

Demographic limitation processes

20 páginas, 2 figuras, 1 tabla, 3 cuadros.-- Editor: Valladares, F.[ES]: Procesos de limitación demográfica. Este capítulo ofrece una revisión de los factores que afectan a la regeneración natural de la vegetación, considerando la serie de etapas demográficas que determinan la dinámica demográfica de una pobla- ción. Son muy escasos los estudios disponibles que analizan toda la serie de eventos concatenados entre la producción de flores y frutos y el establecimiento exitoso de una planta adulta reproductiva. También son escasos los trabajos que permiten establecer los efectos aplazados que tienen las interacciones con animales a lo largo del ciclo de regeneración. La aproximación que proponemos cuantifica las pérdidas de propágulos en cada etapa demográfica e identifica “cuellos de botella” del reclutamiento que pue- den colapsar la regeneración natural de una especie. Revisamos una serie de casos de estudio que ilustran diversos procesos de limitación demográfica. El uso de técnicas explícitamente demográficas es fundamental para comprender la evolución de las especies forestales Mediterráneas y para diseñar actuaciones de preservación de sus poblaciones y de su extraordinaria diversidad.[EN]: We review the main factors influencing recruitment limitation in Mediterranean woody species by considering the sequential stages that determine the demographic cycle. Very few studies examine the whole set of demographic stages, from flower production to the successful establishment of adult reproductive plants, and their influence on recruitment. There are also few studies exploring the delayed effects of animal interactions throughout the regeneration cycle, but the information on stage-specific effects is more detailed. We propose an approach that quantifies the propagule losses at each sequential demographic stage and identifies demographic bottlenecks that might collapse population growth. We review a series of case studies illustrating different limitation processes. The use of explicit demographic techniques is central to understand the evolution of Mediterranean woody species and to design sound, ecologically-based, conservation plans to preserve their extraordinary diversity.Juan Arroyo agradece la financiación otorgada a los proyectos 4474-91 (National Geographic Society), PB 91-0894, PB95-0551, 1FD97-0743-CO3-03, PB98-1144, BOS200307924-CO2-01 (MECD, MCyT). Los trabajos de Pedro Jordano han sido financiados con proyectos MECD y MCyT (1FD97-0743-CO3-01, PB 96-0857, BOS2000-1366-C02-01 y REN2003-00273), así como la Junta de Andalucía (PAI). Juan Luis García-Castaño estuvo financiado durante su período pre-doctoral con una beca FPU, AP96-27318040. El trabajo de Fernando Pulido ha sido parcialmente financiado por una beca FPI de la Junta de Extremadura y los proyectos regional IPR-0A050 y estatal BOS2002- 12222-E del Ministerio de Ciencia y Tecnología. Los trabajos de Patricio García-Fayos han sido financiados con proyectos MCyT (1FD97-0551), de la Generalitat Valenciana (02-046) y de la Institució Alfons el Magnánim (02-046)Peer reviewe

Palm fruit colours are linked with the broad-scale distribution and diversification of primate colour vision systems

A long-standing hypothesis in ecology and evolution is that trichromatic colour vision (the ability to distinguish red from green) in frugivorous primates has evolved as an adaptation to detect conspicuous (reddish) fruits. This could provide a competitive advantage over dichromatic frugivores which cannot distinguish reddish colours from a background of green foliage. Using an unprecedented global data set, we test this hypothesis by combining colour vision, distribution and phylogenetic data for >400 primate species with fruit colour data for >1700 palm species, i.e. keystone fruit resources for tropical frugivores. Structural equation models reveal that species richness of trichromatic primates increases with the proportion of palm species that have conspicuous fruits, especially in subtropical African forests. In contrast, species richness of trichromats in Asia and the Americas is not positively associated with conspicuous palm fruit colours. Macroevolutionary analyses further indicate rapid and synchronous radiations of trichromats and conspicuous palms on the African mainland starting 10 million years ago. These results suggest that the distribution and diversification of African trichromatic primates is strongly linked to the relative availability of conspicuous (vs. cryptic) palm fruits, and that interactions between primates and palms are impacted by the co- evolutionary dynamics of primate colour vision systems and palm fruit colours

Moving from frugivory to seed dispersal: incorporating the functional outcomes of interactions in plant-frugivore networks

1. There is growing interest in understanding the functional outcomes of species interactions in ecological networks. For many mutualistic networks, including pollination and seed dispersal networks, interactions are generally sampled by recording animal foraging visits to plants. However, these visits may not reflect actual pollination or seed dispersal events, despite these typically being the ecological processes of interest. 2. Frugivorous animals can act as seed dispersers, by swallowing entire fruits and dispersing their seeds, or as pulp peckers or seed predators, by pecking fruits to consume pieces of pulp or seeds. These processes have opposing consequences for plant reproductive success. Therefore, equating visitation with seed dispersal could lead to biased inferences about the ecology, evolution and conservation of seed dispersal mutualisms. 3. Here we use natural history information on the functional outcomes of pairwise bird-plant interactions to examine changes in the structure of seven European plant-frugivore visitation networks after non-mutualistic interactions (pulp-pecking and seed predation) have been removed. Following existing knowledge of the contrasting structures of mutualistic and antagonistic networks, we hypothesised a number of changes following interaction removal, such as increased nestedness and lower specialisation. 4. Non-mutualistic interactions with pulp peckers and seed predators occurred in all seven networks, accounting for 21–48% of all interactions and 6–24% of total interaction frequency. When non-mutualistic interactions were removed, there were significant increases in network-level metrics such as connectance and nestedness, while robustness decreased. These changes were generally small, homogenous and driven by decreases in network size. Conversely, changes in species-level metrics were more variable and sometimes large, with significant decreases in plant degree, interaction frequency, specialisation and resilience to animal extinctions, and significant increases in frugivore species strength. 5. Visitation data can overestimate the actual frequency of seed dispersal services in plant-frugivore networks. We show here that incorporating natural history information on the functions of species interactions can bring us closer to understanding the processes and functions operating in ecological communities. Our categorical approach lays the foundation for future work quantifying functional interaction outcomes along a mutualism–antagonism continuum, as documented in other frugivore faunas.B.I.S. was supported by the Natural Environment Research Council as part of the Cambridge Earth System Science NERC DTP (NE/L002507/1). J.P.G.‐V. was funded by an Individual Fellowship from the Marie Sklodowska‐Curie Actions (H2020‐MSCA‐IF‐2014‐656572: MobileLinks). D.G. was funded by a grant from the Spanish MinECo (CGL2017‐82847‐P). W.J.S. is funded by Arcadia. N.F. thanks the administration of the Białowieża National Park, the forestry administrations of Białowieża, Hajnówka and Browsk and Polish authorities (Ministry of Environment, GDOS and RDOS) for the permissions to work in Białowieża Forest. J.A. was supported by the German Federal Foundation for Environment (DBU) and by the German Academic Exchange Service in the framework of a post‐doctorate fellowship grant (DAAD, No 91568794). L.V.D. was supported by the Natural Environment Research Council (grants NE/K015419/1 and NE/N014472/1)

Cascading Dynamics in Modular Networks

In this paper we study a simple cascading process in a structured heterogeneous population, namely, a network composed of two loosely coupled communities. We demonstrate that under certain conditions the cascading dynamics in such a network has a two--tiered structure that characterizes activity spreading at different rates in the communities. We study the dynamics of the model using both simulations and an analytical approach based on annealed approximation, and obtain good agreement between the two. Our results suggest that network modularity might have implications in various applications, such as epidemiology and viral marketing.Comment: 5 pages, 4 figure

The Dynamics of Nestedness Predicts the Evolution of Industrial Ecosystems

In economic systems, the mix of products that countries make or export has been shown to be a strong leading indicator of economic growth. Hence, methods to characterize and predict the structure of the network connecting countries to the products that they export are relevant for understanding the dynamics of economic development. Here we study the presence and absence of industries at the global and national levels and show that these networks are significantly nested. This means that the less filled rows and columns of these networks' adjacency matrices tend to be subsets of the fuller rows and columns. Moreover, we show that nestedness remains relatively stable as the matrices become more filled over time and that this occurs because of a bias for industries that deviate from the networks' nestedness to disappear, and a bias for the missing industries that reduce nestedness to appear. This makes the appearance and disappearance of individual industries in each location predictable. We interpret the high level of nestedness observed in these networks in the context of the neutral model of development introduced by Hidalgo and Hausmann (2009). We show that, for the observed fills, the model can reproduce the high level of nestedness observed in these networks only when we assume a high level of heterogeneity in the distribution of capabilities available in countries and required by products. In the context of the neutral model, this implies that the high level of nestedness observed in these economic networks emerges as a combination of both, the complementarity of inputs and heterogeneity in the number of capabilities available in countries and required by products. The stability of nestedness in industrial ecosystems, and the predictability implied by it, demonstrates the importance of the study of network properties in the evolution of economic networks.Comment: 26 page