Metabolic rate and growth in the temperate bivalve Mercenaria mercenaria at a biogeographic limit, from the English Channel

Metabolism and growth rate of the hard clam, Mercenaria mercenaria, were investigated in a population invasive to Southampton Water, southern England. An individual metabolic model expressed as a function of soft tissue dry mass was fitted to data of 18 individuals (log (VO2) = −1.952 + 0.543 • log (DM); F1,16 = 201.18, P < 0.001, r2 = 0.926). A von Bertalanffy growth function was fitted to 227 size-at-age data pairs of 18 individuals (Ht = 80.13 • (1 − e−0.149 • (t−0.542)); r2 = 0.927). Individual age-specific somatic production was calculated, demonstrating increase with age to a maximum of 3.88 kJ y−1 at ten years old followed by decrease, and individual age-specific annual respiration was calculated, demonstrating asymptotic increase with age to 231.37 kJ y−1 at 30 years old. Results found here lie within the physiological tolerances reported across the biogeographical range, suggesting that the species' biogeographical limitation in the UK to Southampton Water results from ecological rather than physiological factors

Structure and Properties of Traces for Functional Programs

The tracer Hat records in a detailed trace the computation of a program written in the lazy functional language Haskell. The trace can then be viewed in various ways to support program comprehension and debugging. The trace was named the augmented redex trail. Its structure was inspired by standard graph rewriting implementations of functional languages. Here we describe a model of the trace that captures its essential properties and allows formal reasoning. The trace is a graph constructed by graph rewriting but goes beyond simple term graphs. Although the trace is a graph whose structure is independent of any rewriting strategy, we define the trace inductively, thus giving us a powerful method for proving its properties

Compositional Explanation of Types and Algorithmic Debugging of Type Errors

The type systems of most typed functional programming languages are based on the Hindley-Milner type system. A practical problem with these type systems is that it is often hard to understand why a program is not type correct or a function does not have the intended type. We suggest that at the core of this problem is the difficulty of explaining why a given expression has a certain type. The type system is not defined compositionally. We propose to explain types using a variant of the Hindley-Milner type system that defines a compositional type explanation graph of principal typings. We describe how the programmer understands types by interactive navigation through the explanation graph. Furthermore, the explanation graph can be the foundation for algorithmic debugging of type errors, that is, semi-automatic localisation of the source of a type error without even having to understand the type inference steps. We implemented a prototype of a tool to explore the usefulness of the proposed methods

Evaluation of a real-time simulation environment for helicopter air-to-air refuelling investigations

The ability to perform air-to-air refuelling (AAR) can dramatically extend the utility of helicopters, through effectively providing unlimited range. For helicopters, AAR is typically performed utilising the probe-and-drogue aerial refuelling method. This is a complex manoeuver, where normally both the helicopter and tanker aircraft are operating at the limits of their flight envelopes. In addition, the wake flow from the tanker aircraft can cause a significant disturbance on the refuelling helicopter. This paper presents the initial evaluation of an AAR scenario constructed within DLR’s flight simulator, the Air Vehicle Simulator (AVES), based on current procedures and pilot interviews. A mission task was defined to assess the scenario in AVES and results are subsequently discussed. For pilots unfamiliar to formation flight or HAAR, the results show the difficulty of the flying task itself at the given cueing. Measures for improvement in future investigations are suggested

Inverse Compton Emission of TeV Gamma Rays from PSR B1259-63

We derive light curves for the hard gamma-ray emission, at energies up to several TeV, expected from the unique pulsar/Be-star binary system PSR B1259-63. This is the only known system in our galaxy in which a radio pulsar is orbiting a main sequence star. We show that inverse Compton emission from the electrons and positrons in the shocked pulsar wind, scattering target photons from the Be star, produces a flux of hard gamma-rays that should be above the sensitivity threshold of present day atmospheric Cerenkov detectors. Furthermore, we predict that the flux of hard gamma-rays produced via this mechanism has a characteristic variation with orbital phase that should be observable, and which is not expected from any other mechanism.Comment: To be published in Astroparticle Physics. 24 pages, 8 figure

Report on Innovative Financial Instruments for the Implementation of the SET Plan, First-Of-A-Kind projects

This report responds to the request of Commissioner Oettinger and the Cabinet of Commissioner Geoghegan-Quinn end of 2012, for an expert assessment and recommendations regarding the financing of first-of-a-kind commercial demonstration projects as prioritised in the roadmaps of the Strategic Energy Technology (SET) Plan. The expert group comprised representatives of financial organisations, i.e. the European Investment Bank, the European Venture Capital Association, the European Insurance and Re-insurance federation, the World Bank, and the Climate Change Capital. Six hearings with key stakeholders representing the SET Plan European Industrial Initiatives (EIIs), as well as the Fuel Cells and Hydrogen Joint Undertaking were held. These hearings provided information regarding their main barriers for implementation and the gaps as regards access to finance. Existing EU financial were evaluated too. The report concludes that a new financial instrument at EU level is not needed since existing financial instruments already provide equity, loans, or guarantees. However, until now, those instruments have not provided the financing required. As a response to this problem a set of changes to existing financial instruments and their utilisation were recommended.JRC.F.6-Energy systems evaluatio

Dynamic clonal progression in xenografts of acute lymphoblastic leukemia with intrachromosomal amplification of chromosome 21

Intrachromosomal amplification of chromosome 21 is a heterogeneous chromosomal rearrangement occurring in 2% of childhood precursor B-cell acute lymphoblastic leukemia. There are no cell lines with iAMP21 and these abnormalities are too complex to faithfully engineer in animal models. As a resource for future functional and pre-clinical studies, we have created xenografts from intrachromosomal amplification of chromosome 21 leukemia patient blasts and characterised them by in-vivo and ex-vivo luminescent imaging, FLOW immunophenotyping, and histological and ultrastructural analysis of bone marrow and the central nervous system. Investigation of up to three generations of xenografts revealed phenotypic evolution, branching genomic architecture and, compared with other B-cell acute lymphoblastic leukemia genetic subtypes, greater clonal diversity of leukemia initiating cells. In support of intrachromosomal amplification of chromosome 21 as a primary genetic abnormality, it was always retained through generations of xenografts, although we also observed the first example of structural evolution of this rearrangement. Clonal segregation in xenografts revealed convergent evolution of different secondary genomic abnormalities implicating several known tumour suppressor genes and a region, containing the B-cell adaptor, PIK3AP1, and nuclear receptor co-repressor, LCOR, in the progression of B-ALL. Tracking of mutations in patients and derived xenografts provided evidence for co-operation between abnormalities activating the RAS pathway in B-ALL and for their aggressive clonal expansion in the xeno-environment. Bi-allelic loss of the CDKN2A/B locus was recurrently maintained or emergent in xenografts and also strongly selected as RNA sequencing demonstrated a complete absence of reads for genes associated with the deletions

Acylpeptide hydrolase: inhibitors and some active site residues of the human enzyme.

Acylpeptide hydrolase may be involved in N-terminal deacetylation of nascent polypeptide chains and of bioactive peptides. The activity of this enzyme from human erythrocytes is sensitive to anions such as chloride, nitrate, and fluoride. Furthermore, blocked amino acids act as competitive inhibitors of the enzyme. Acetyl leucine chloromethyl ketone has been employed to identify one active site residue as His-707. Diisopropylfluorophosphate has been used to identify a second active site residue as Ser-587. Chemical modification studies with a water-soluble carbodiimide implicate a carboxyl group in catalytic activity. These results and the sequence around these active site residues, especially near Ser-587, suggest that acylpeptide hydrolase contains a catalytic triad. The presence of a cysteine residue in the vicinity of the active site is suggested by the inactivation of the enzyme by sulfhydryl-modifying agents and also by a low amount of modification by the peptide chloromethyl ketone inhibitor. Ebelactone A, an inhibitor of the formyl aminopeptidase, the bacterial counterpart of eukaryotic acylpeptide hydrolase, was found to be an effective inhibitor of this enzyme. These findings suggest that acylpeptidase hydrolase is a member of a family of enzymes with extremely diverse functions

Identifying factors associated with sedentary time after stroke. Secondary analysis of pooled data from nine primary studies.

<p><b>Background</b>: High levels of sedentary time increases the risk of cardiovascular disease, including recurrent stroke.</p> <p><b>Objective</b>: This study aimed to identify factors associated with high sedentary time in community-dwelling people with stroke.</p> <p><b>Methods</b>: For this data pooling study, authors of published and ongoing trials that collected sedentary time data, using the activPAL monitor, in community-dwelling people with stroke were invited to contribute their raw data. The data was reprocessed, algorithms were created to identify sleep-wake time and determine the percentage of waking hours spent sedentary. We explored demographic and stroke-related factors associated with total sedentary time and time in uninterrupted sedentary bouts using unique, both univariable and multivariable, regression analyses.</p> <p><b>Results</b>: The 274 included participants were from Australia, Canada, and the United Kingdom, and spent, on average, 69% (SD 12.4) of their waking hours sedentary. Of the demographic and stroke-related factors, slower walking speeds were significantly and independently associated with a higher percentage of waking hours spent sedentary (p = 0.001) and uninterrupted sedentary bouts of <i>>30</i> and <i>>60 min</i> (p = 0.001 and p = 0.004, respectively). Regression models explained 11–19% of the variance in total sedentary time and time in prolonged sedentary bouts.</p> <p><b>Conclusion</b>: We found that variability in sedentary time of people with stroke was largely unaccounted for by demographic and stroke-related variables. Behavioral and environmental factors are likely to play an important role in sedentary behavior after stroke. Further work is required to develop and test effective interventions to address sedentary behavior after stroke.</p

Implementation of U.K. Earth system models for CMIP6

We describe the scientific and technical implementation of two models for a core set of experiments contributing to the sixth phase of the Coupled Model Intercomparison Project (CMIP6). The models used are the physical atmosphere-land-ocean-sea ice model HadGEM3-GC3.1 and the Earth system model UKESM1 which adds a carbon-nitrogen cycle and atmospheric chemistry to HadGEM3-GC3.1. The model results are constrained by the external boundary conditions (forcing data) and initial conditions.We outline the scientific rationale and assumptions made in specifying these. Notable details of the implementation include an ozone redistribution scheme for prescribed ozone simulations (HadGEM3-GC3.1) to avoid inconsistencies with the model's thermal tropopause, and land use change in dynamic vegetation simulations (UKESM1) whose influence will be subject to potential biases in the simulation of background natural vegetation.We discuss the implications of these decisions for interpretation of the simulation results. These simulations are expensive in terms of human and CPU resources and will underpin many further experiments; we describe some of the technical steps taken to ensure their scientific robustness and reproducibility