Génétique des populations de Beryx splendens de la zone économique de la Nouvelle-Calédonie : distribution des haplotypes du gène du cytochrome b de l'ADN mitochondrial et analyse phylogénétique de leurs séquences

La délimitation géographique des populations, établie sur les bases biologiques, est nécessaire à toute gestion rationnelle des pêcheries. Tel est le cas pour #Beryx splendens, ressource pour laquelle la mise en évidence de différentes populations dans la zone économique (ZE) de Nouvelle-Calédonie serait essentielle pour en éviter la surexploitation. L'ADN mitochondrial a été choisi comme marqueur génétique de la structure géographique de #B. splendens sur les monts sous-marins de la ZE de Nouvelle-Calédonie. (D'après résumé d'auteur

Reduced up-regulation of gene expression in response to elevated temperatures in the mid-Atlantic population of Calanus finmarchicus

Abstract Climate change is affecting numerous species worldwide, including dominant and important copepods of the genus Calanus. Despite the growing body of studies that examine effects of climate change stressors on Calanus species, comparative intraspecific studies are lacking. Importantly, acclimatization and genetic adaptation can modify the stress response, thus leading to a differential response of separated populations to the same stressor. The molecular and physiological responses of a C. finmarchicus population from the mid-Atlantic, with an in situ temperature of 8.5 °C, were investigated under experimental thermal conditions of 0 °C, 5 °C, 10 °C, 15 °C, and 20 °C for durations of 3 h and 6 days. This experimental set-up mirrored previously published experiments conducted on C. finmarchicus at the northern limit of its distribution allowing a comparison between two populations. The greatest physiological response, assessed as fecal pellet production, was seen after 3 h exposure at 10 °C and 15 °C, and after 6 days exposure at 5 °C, 10 °C and 15 °C. Molecular response was assessed by the change in expression of 5 selected genes: hsp70_2, dnaja1, nap 1l1, rps11, and gdh. Only two out of the five genes (gdh and nap1l1) showed significant up-regulation with increased temperature and duration of exposure. These findings differ from the results obtained in the northern population where all 5 genes were differently expressed. Overall, the results suggest population-specific response to temperature in C. finmarchicus, however determining the source of such variation (genetic adaptation or acclimatization) requires more detailed studies

An efficient implicit direct forcing immersed boundary method for incompressible flows

International audienceA novel efficient implicit direct forcing immersed boundary method for incompressible flows with complex boundaries is presented. In the previous work [1], the calculation is performed on the Cartesian grid regardless of the immersed object, with a fictitious force evaluated on the Lagrangian points to mimic the presence of the physical boundaries. However the explicit direct forcing method [1] fails to accurately impose the non-slip boundary condition on the immersed interface. In the present work, the calculation is based on the implicit treatment of the artificial force while in an effective way of system iteration. The accuracy is also improved by solving the Navier-Stokes equation with the rotational incremental pressure- correction projection method of Guermond and Shen [2]. Numerical simulations performed with the proposed method are in good agreement with those in the literature

Robust Adaptive Detection of Buried Pipes using GPR

International audienceDetection of buried objects such as pipes using a Ground Penetrating Radar (GPR) is intricate for three main reasons. First, noise is important in the resulting image because of the presence of several rocks and/or layers in the ground, highly influencing the Probability of False Alarm (PFA) level. Also, wave speed and object responses are unknown in the ground and depend on the relative permit-tivity, which is not directly measurable. Finally, the depth of the pipes leads to strong attenuation of the echoed signal, leading to poor SNR scenarios. In this paper, we propose a detection method: (1) enhancing the signal of interest while reducing the noise and layer contributions, and (2) giving a local estimate of the relative permittivity. We derive an adaptive detector where the signal of interest is parametrised by the wave speed in the ground. For this detector, noise is assumed to follow a Spherically Invariant Random Vector (SIRV) distribution in order to obtain a robust detection. We use robust maximum likelihood-type covariance matrix estimators called M-estimators. To handle the significant amount of data, we consider regularised versions of said estimators. Simulation will allow to estimate the relation PFA-Threshold. Comparison is performed with standard GPR processing methods, showing the aptitude of the method in detecting pipes having low response levels with a reasonable PFA

Improving transferability of introduced species' distribution models: new tools to forecast the spread of a highly invasive seaweed

Extent: 13 p.The utility of species distribution models for applications in invasion and global change biology is critically dependent on their transferability between regions or points in time, respectively. We introduce two methods that aim to improve the transferability of presence-only models: density-based occurrence thinning and performance-based predictor selection. We evaluate the effect of these methods along with the impact of the choice of model complexity and geographic background on the transferability of a species distribution model between geographic regions. Our multifactorial experiment focuses on the notorious invasive seaweed Caulerpa cylindracea (previously Caulerpa racemosa var. cylindracea) and uses Maxent, a commonly used presence-only modeling technique. We show that model transferability is markedly improved by appropriate predictor selection, with occurrence thinning, model complexity and background choice having relatively minor effects. The data shows that, if available, occurrence records from the native and invaded regions should be combined as this leads to models with high predictive power while reducing the sensitivity to choices made in the modeling process. The inferred distribution model of Caulerpa cylindracea shows the potential for this species to further spread along the coasts of Western Europe, western Africa and the south coast of Australia.Heroen Verbruggen, Lennert Tyberghein, Gareth S. Belton, Frederic Mineur, Alexander Jueterbock, Galice Hoarau, C. Frederico D. Gurgel, Olivier De Clerc

Evolution and diversification within the intertidal brown macroalgae Fucus spiralis/F. vesiculosus species complex in the North Atlantic

We examined 733 individuals of Fucusspiralis from 21 locations and 1093 Fucusvesiculosus individuals from 37 locations throughout their northern hemisphere ranges using nuclear and mitochondrial markers. Three genetic entities of F. spiralis were recovered. In northern and sympatric populations, the presence of "F. spiralis Low" in the mid-intertidal and "F. spiralis High" in the high-intertidal was confirmed and both co-occurred with the sister species F. vesiculosus. The third and newly-discovered entity, "F. spiralis South", was present mainly in the southern range, where it did not co-occur with F. vesiculosus. The South entity diverged early in allopatry, then hybridized with F. vesiculosus in sympatry to produce F. spiralis Low. Ongoing parallel evolution of F. spiralis Low and F. spiralis High is most likely due to habitat preference/local selection and maintained by preferentially selfing reproductive strategies. Contemporary populations of F. spiralis throughout the North Atlantic stem from a glacial refugium around Brittany involving F. spiralis High; F. spiralis South was probably unaffected by glacial episodes. Exponential population expansion for F. vesiculosus began during the Cromer and/Holstein interglacial period (300,000-200,000 yrs BP). Following the last glacial maximum (30,000-22,000 yrs BP), a single mtDNA haplotype from a glacial refugium in SW Ireland colonized Scandinavia, the Central Atlantic islands, and the W Atlantic

Genome-wide phylogeography reveals cryptic speciation in the circumglobal planktonic calcifier Limacina bulimoides

Little is known about when and how planktonic species arise and persist in the open ocean without apparent dispersal barriers. Pteropods are planktonic snails with thin shells susceptible to dissolution that are used as bio-indicators of ocean acidification. However, distinct evolutionary units respond to acidification differently, and defining species boundaries is therefore crucial for predicting the impact of changing ocean conditions. In this global population genomic study of the shelled pteropod Limacina bulimoides, we combined genetic (759,000 single nucleotide polymorphisms) and morphometric data from 161 individuals, revealing three major genetic lineages (FST = 0.29–0.41): an “Atlantic lineage” sampled across the Atlantic, an “Indo-Pacific lineage” sampled in the North Pacific and Indian Ocean, and a “Pacific lineage” sampled in the North and South Pacific. A time-calibrated phylogeny suggests that the lineages diverged about 1 million years ago, with estimated effective population size remaining high (~10 million) throughout Pleistocene glacial cycles. We do not observe any signatures of recent hybridization, even in areas of sympatry in the North Pacific. While the lineages are reproductively isolated, they are morphologically cryptic, with overlapping shell shape and shell colour distributions. Despite showing that the circumglobal L. bulimoides consists of multiple species with smaller ranges than initially thought, we found that these pteropods still possess high levels of genetic variability. Our study adds to the growing evidence that speciation is often overlooked in the open ocean, and suggests the presence of distinct biological species within many other currently defined circumglobal planktonic species

Microfabrication technology for large LEKID arrays : from NIKA2 to future applications

The Lumped Element Kinetic Inductance Detectors (LEKID)demonstrated full maturity in the NIKA (New IRAM KID Arrays)instrument. These results allow directly comparing LEKID performance with other competing technologies (TES, doped silicon) in the mm and sub-mm range. A continuing effort is ongoing to improve the microfabrication technologies and concepts in order to satisfy the requirements of new instruments. More precisely, future satellites dedicated to CMB (Cosmic Microwave Background) studies will require the same focal plane technology to cover, at least, the frequency range of 60 to 600 GHz. Aluminium LEKID developed for NIKA have so far demonstrated, under real telescope conditions, performance approaching photon-noise limitation in the band 120-300 GHz. By implementing superconducting bi-layers we recently demonstrated LEKID arrays working in the range 80-120 GHz and with sensitivities approaching the goals for CMB missions. NIKA itself (350 pixels) is followed by a more ambitious project requiring several thousands (3000-5000) pixels. NIKA2 has been installed in October 2015 at the IRAM 30-m telescope. We will describe in detail the technological improvements that allowed a relatively harmless 10-fold up-scaling in pixels count without degrading the initial sensitivity. In particular we will briefly describe a solution to simplify the difficult fabrication step linked to the slot-line propagation mode in coplanar waveguide