Bis[(5-phenyl-1,3,4-thia­diazol-2-yl)sulfan­yl]methane

The asymmetric unit of the title compound, C17H12N4S4, contains one half-mol­ecule situated on a twofold rotational axis. In the mol­ecule, the thia­diazole and attached phenyl rings are twisted by 5.8 (3)°

Implementation of the INTERGROWTH-21st Project in Kenya

The African site in the INTERGROWTH-21(st) Project was Parklands, a wealthy suburb of Nairobi, Kenya, with a largely middle-to-high socio-economic status population. There are three hospitals with obstetric units in Parklands, with approximately 4300 births per year. The Newborn Cross-Sectional Study (NCSS) sample was drawn from all three hospitals, covering 100% of births in this target population. The Fetal Growth Longitudinal Study (FGLS) sample was recruited from antenatal clinics serving these hospitals, using the eligibility criteria in the INTERGROWTH-21(st) protocol. Special activities to raise awareness of the study included securing media coverage and distributing leaflets in antenatal clinic waiting rooms. FGLS required women to be recruited in the first trimester; therefore, a major challenge at this study site was the high background frequency of first antenatal consultations in the second trimester. The problem was overcome by the study awareness campaign, as a result of which more women started attending antenatal care earlier in pregnancy

Unparticle effects on top quark rare decays

In this work we study the flavor changing neutral current(FCNC) decays of the top quark, $t\to c\gamma$ and $t\to c g$. The Standard Model, predictions for the branching ratios of these decays are about $\sim 5\times 10^{-14}$, and $\sim 1\times 10^{-12}$, respectively. The recent study presented by the ATLAS Collaboration gives a sensitivity on these branching ratios about $\sim 10^{-5}$ at $$ C.L. The parameter space of $\lambda$, $\Lambda$, and $d$ where the branching ratios of $t\to c\gamma$ and $t\to c g$ decays exceed these predictions is obtained

LegumeGRN: a gene regulatory network prediction server for functional and comparative studies

Building accurate gene regulatory networks (GRNs) from high-throughput gene expression data is a long-standing challenge. However, with the emergence of new algorithms combined with the increase of transcriptomic data availability, it is now reachable. To help biologists to investigate gene regulatory relationships, we developed a web-based computational service to build, analyze and visualize GRNs that govern various biological processes. The web server is preloaded with all available Affymetrix GeneChip-based transcriptomic and annotation data from the three model legume species, i.e., Medicago truncatula, Lotus japonicus and Glycine max. Users can also upload their own transcriptomic and transcription factor datasets from any other species/organisms to analyze their in-house experiments. Users are able to select which experiments, genes and algorithms they will consider to perform their GRN analysis. To achieve this flexibility and improve prediction performance, we have implemented multiple mainstream GRN prediction algorithms including co-expression, Graphical Gaussian Models (GGMs), Context Likelihood of Relatedness (CLR), and parallelized versions of TIGRESS and GENIE3. Besides these existing algorithms, we also proposed a parallel Bayesian network learning algorithm, which can infer causal relationships (i.e., directionality of interaction) and scale up to several thousands of genes. Moreover, this web server also provides tools to allow integrative and comparative analysis between predicted GRNs obtained from different algorithms or experiments, as well as comparisons between legume species. The web site is available at http://legumegrn.noble.org.Oklahoma Center for The Advancement of Science and Technology: (OCAST Grant No. PSB11-031)

Improving understanding of the underlying physical process of sediment wash-off from urban road surfaces

Among the urban aquatic pollutants, the most common is sediment which also acts as a transport medium for many contaminants. Hence there is an increasing interest in being able to better predict the sediment wash–off from urban surfaces. The exponential wash-off model is the most widely used method to predict the sediment wash-off. Although a number of studies proposed various modifications to the original exponential wash-off equation, these studies mostly looked into one parameter in isolation thereby ignoring the interactions between the parameters corresponding to rainfall, catchment and sediment characteristics. Hence in this study we aim (a) to investigate the effect of rainfall intensity, surface slope and initial load on wash-off load in an integrated and systematic way and (b) to subsequently improve the exponential wash-off equation focusing on the effect of the aforementioned three parameters. A series of laboratory experiments were carried out in a full-scale setup, comprising of a rainfall simulator, a 1 m 2 bituminous road surface, and a continuous wash-off measuring system. Five rainfall intensities ranging from 33 to 155 mm/h, four slopes ranging from 2 to 16% and three initial loads ranging from 50 to 200 g/m 2 were selected based on values obtained from the literature. Fine sediment with a size range of 300–600 µm was used for all of the tests. Each test was carried out for one hour with at least 9 wash-off samples per test collected. Mass balance checks were carried out for all the tests as a quality control measure to make sure that there is no significant loss of sand during the tests. Results show that the washed off sediment load at any given time is proportional to initial load for a given combination of rainfall intensity and surface slope. This indicates the importance of dedicated modelling of build-up so as to subsequently predict wash-off load. It was also observed that the maximum fraction that is washed off from the surface increases with both rainfall intensity and the surface slope. This observation leads to the second part of the study where the existing wash-off model is modified by introducing a capacity factor which defines this maximum fraction. This capacity factor is derived as a function of wash-off coefficient, making use of the correlation between the maximum fraction and the wash-off rate. Values of the modified wash-off coefficient are presented for all combinations of rainfall intensities and surface slopes, which can be transferred to other urban catchments with similar conditions

Measurement of the refractive index of electrically poled soda-lime glass layers using leaky modes

Electrically poled layers have been formed in soda-lime glass using graphite electrodes in air. The refractive index and thickness of the poled glass layers have been measured by the analysis of leaky optical modes. These modes are supported by the poled layer and can be determined by analysis of the optical reflectivity measured with a prism coupler arrangement. A relatively constant refractive index ~ 1.486 in the poled glass region is measured, which is ~0.03 below the substrate index. The reflectivity data shows that the transition between poled and un-poled glass is very sharp and is consistent with ion transport models. The thickness of the poled glass region is consistent with the removal of Na+ and K+ ions from the poled region. The index and depth data is confirmed by interferometric measurements. The tensile stress in the poled glass layer is also estimated from optical birefringence measurements and is estimated to be ~0.3 GN/m2

Composted Sewage Sludge Application Reduces Mineral Fertilization Requirements and Improves Soil Fertility in Sugarcane Seedling Nurseries

Sugarcane demands large amounts of nutrients to reach a high level of productivity. Nutrients are generally supplied by mineral fertilizers, but their high costs and negative environmental impacts have generated interest in greater use of organic nutrient sources such as composted sewage sludge (CSS). In this study, we evaluated changes in soil chemical properties after the application of CSS or CSS/mineral fertilizer (MF) combinations to soil containing sugarcane seedlings under nursery conditions. Treatments included: T1: conventional mineral fertilization (MF) without application of CSS, T2: 100% of the recommended MF (06–30–24); T3: application of 2.5 Mg−1 CSS; T4: 5.0 Mg−1 CSS, T5: 7.5 Mg−1 CSS, T6: 2.5 Mg−1 CSS and 50% MF, T7: 5.0 Mg−1 CSS and 50% MF, T8: 7.5 Mg−1 CSS and 50% MF, T9: 2.5 Mg−1 CSS and 100% MF, T10: 5.0 Mg−1 CSS and 100% MF, T11: 7.5 Mg−1 CSS and 100% MF. Soil chemical properties were evaluated from the soil surface (0.0–0.25 m) and subsurface (0.25–0.50 m) horizons. The results showed that the increase in CSS application did not affect soil organic matter content at either depth, while Zn concentrations increased in the soil subsurface horizon. The application of CSS at 5.0 Mg ha−1 with or without 50% MF resulted in the highest pH values, sum of bases, cation-exchange capacity, P, K, Ca, Mg, Cu, and Zn in surface horizons. The use of CSS as an organic fertilizer in sugarcane nurseries improves soil fertility, reduces mineral fertilizer requirements, and, thus, facilitates the sustainable disposal of sewage sludge

MiR-155 has a protective role in the development of non-alcoholic hepatosteatosis in mice

Hepatic steatosis is a global epidemic that is thought to contribute to the pathogenesis of type 2 diabetes. MicroRNAs (miRs) are regulators that can functionally integrate a range of metabolic and inflammatory pathways in liver. We aimed to investigate the functional role of miR-155 in hepatic steatosis. Male C57BL/6 wild-type (WT) and miR-155−/− mice were fed either normal chow or high fat diet (HFD) for 6 months then lipid levels, metabolic and inflammatory parameters were assessed in livers and serum of the mice. Mice lacking endogenous miR-155 that were fed HFD for 6 months developed increased hepatic steatosis compared to WT controls. This was associated with increased liver weight and serum VLDL/LDL cholesterol and alanine transaminase (ALT) levels, as well as increased hepatic expression of genes involved in glucose regulation (Pck1, Cebpa), fatty acid uptake (Cd36) and lipid metabolism (Fasn, Fabp4, Lpl, Abcd2, Pla2g7). Using miRNA target prediction algorithms and the microarray transcriptomic profile of miR-155−/− livers, we identified and validated that Nr1h3 (LXRα) as a direct miR-155 target gene that is potentially responsible for the liver phenotype of miR-155−/− mice. Together these data indicate that miR-155 plays a pivotal role regulating lipid metabolism in liver and that its deregulation may lead to hepatic steatosis in patients with diabetes

Chromosome-wide mapping of DNA methylation patterns in normal and malignant prostate cells reveals pervasive methylation of gene-associated and conserved intergenic sequences

RIGHTS : This article is licensed under the BioMed Central licence at http://www.biomedcentral.com/about/license which is similar to the 'Creative Commons Attribution Licence'. In brief you may : copy, distribute, and display the work; make derivative works; or make commercial use of the work - under the following conditions: the original author must be given credit; for any reuse or distribution, it must be made clear to others what the license terms of this work are.Abstract Background DNA methylation has been linked to genome regulation and dysregulation in health and disease respectively, and methods for characterizing genomic DNA methylation patterns are rapidly emerging. We have developed/refined methods for enrichment of methylated genomic fragments using the methyl-binding domain of the human MBD2 protein (MBD2-MBD) followed by analysis with high-density tiling microarrays. This MBD-chip approach was used to characterize DNA methylation patterns across all non-repetitive sequences of human chromosomes 21 and 22 at high-resolution in normal and malignant prostate cells. Results Examining this data using computational methods that were designed specifically for DNA methylation tiling array data revealed widespread methylation of both gene promoter and non-promoter regions in cancer and normal cells. In addition to identifying several novel cancer hypermethylated 5' gene upstream regions that mediated epigenetic gene silencing, we also found several hypermethylated 3' gene downstream, intragenic and intergenic regions. The hypermethylated intragenic regions were highly enriched for overlap with intron-exon boundaries, suggesting a possible role in regulation of alternative transcriptional start sites, exon usage and/or splicing. The hypermethylated intergenic regions showed significant enrichment for conservation across vertebrate species. A sampling of these newly identified promoter (ADAMTS1 and SCARF2 genes) and non-promoter (downstream or within DSCR9, C21orf57 and HLCS genes) hypermethylated regions were effective in distinguishing malignant from normal prostate tissues and/or cell lines. Conclusions Comparison of chromosome-wide DNA methylation patterns in normal and malignant prostate cells revealed significant methylation of gene-proximal and conserved intergenic sequences. Such analyses can be easily extended for genome-wide methylation analysis in health and disease.Published versio

Singular values of the Dirac operator in dense QCD-like theories

We study the singular values of the Dirac operator in dense QCD-like theories at zero temperature. The Dirac singular values are real and nonnegative at any nonzero quark density. The scale of their spectrum is set by the diquark condensate, in contrast to the complex Dirac eigenvalues whose scale is set by the chiral condensate at low density and by the BCS gap at high density. We identify three different low-energy effective theories with diquark sources applicable at low, intermediate, and high density, together with their overlapping domains of validity. We derive a number of exact formulas for the Dirac singular values, including Banks-Casher-type relations for the diquark condensate, Smilga-Stern-type relations for the slope of the singular value density, and Leutwyler-Smilga-type sum rules for the inverse singular values. We construct random matrix theories and determine the form of the microscopic spectral correlation functions of the singular values for all nonzero quark densities. We also derive a rigorous index theorem for non-Hermitian Dirac operators. Our results can in principle be tested in lattice simulations.Comment: 3 references added, version published in JHE