Sγ3 switch sequences function in place of endogenous Sγ1 to mediate antibody class switching

Immunoglobulin heavy chain (IgH) class switch recombination (CSR) replaces the initially expressed IgH Cμ exons with a set of downstream IgH constant region (CH) exons. Individual sets of CH exons are flanked upstream by long (1–10-kb) repetitive switch (S) regions, with CSR involving a deletional recombination event between the donor Sμ region and a downstream S region. Targeting CSR to specific S regions might be mediated by S region–specific factors. To test the role of endogenous S region sequences in targeting specific CSR events, we generated mutant B cells in which the endogenous 10-kb Sγ1 region was replaced with wild-type (WT) or synthetic 2-kb Sγ3 sequences or a synthetic 2-kb Sγ1 sequence. We found that both the inserted endogenous and synthetic Sγ3 sequences functioned similarly to a size-matched synthetic Sγ1 sequence to mediate substantial CSR to IgG1 in mutant B cells activated under conditions that stimulate IgG1 switching in WT B cells. We conclude that Sγ3 can function similarly to Sγ1 in mediating endogenous CSR to IgG1. The approach that we have developed will facilitate assays for IgH isotype–specific functions of other endogenous S regions

ATM-deficient thymic lymphoma is associated with aberrant tcrd rearrangement and gene amplification

Ataxia telangiectasia mutated (ATM) deficiency predisposes humans and mice to T lineage lymphomas with recurrent chromosome 14 translocations involving the T cell receptor α/δ (Tcra/d) locus. Such translocations have been thought to result from aberrant repair of DNA double-strand breaks (DSBs) during Tcra locus V(D)J recombination, and to require the Tcra enhancer (Eα) for Tcra rearrangement or expression of the translocated oncogene. We now show that, in addition to the known chromosome 14 translocation, ATM-deficient mouse thymic lymphomas routinely contain a centromeric fragment of chromosome 14 that spans up to the 5′ boundary of the Tcra/d locus, at which position a 500-kb or larger region centromeric to Tcra/d is routinely amplified. In addition, they routinely contain a large deletion of the telomeric end of one copy of chromosome 12. In contrast to prior expectations, the recurrent translocations and amplifications involve V(D)J recombination–initiated breaks in the Tcrd locus, as opposed to the Tcra locus, and arise independently of the Eα. Overall, our studies reveal previously unexpected mechanisms that contribute to the oncogenic transformation of ATM-deficient T lineage cells

Tracking RPE transplants labeled by retroviral gene transfer with green fluorescent protein

PURPOSE. To determine whether human retinal pigment epithelium (RPE) can be modified by retroviral-mediated gene transfer and to monitor the human RPE cells in the subretinal space of living rabbits with scanning laser ophthalmoscopy (SLO). METHODS. Cultured human fetal retinal pigment epithelium (HFRPE) was exposed to green fluorescent protein (GFP)-transducing retroviral vectors, Moloney murine leukemia virus, and lentivirus. The cultured cells were followed by fluorescence microscopy. Suspensions of GFP-expressing HFRPE were transplanted into the subretinal space of pigmented rabbits, and the transplant sites were examined by SLO for fluorescence, including fluorescein and indocyanine green angiography. The rabbits were euthanatized at different times after transplantation, and the retinas were studied histologically. RESULTS. Retroviral gene transfer can introduce a foreign gene such as GFP into cultured HFRPE. Gene expression is maintained in cultured RPE for at least 3 months. The lentiviral vector traduced both nondividing and dividing cells; the Moloney vector only transduced the latter. GFPexpressing cells can be followed in the living retina. Their changes reflect the rejection response followed histologically. CONCLUSIONS. Cultured HFRPE could be transduced to express GFP for long periods of time by retroviral gene transfer. GFP allowed retinal transplants and gene expression to be monitored in vivo. These results provide a model for potential ex vivo gene therapy in the subretinal space. (Invest Ophthalmol Vis Sci. 1999;40:2141-2146 T he green fluorescent protein (GFP) gene has been derived from the bioluminescent jelly fish, Aequorin victoria. This protein fluoresces green light when excited by blue or ultraviolet light. The cloning of this gene and the demonstration that it can be expressed in other organisms provides a useful way to select and follow cells exhibiting specific gene expression, [1][2][3] especially in a transparent structure such as the eye. 4 We have used replication-deficient retroviruses to transduce cultured human fetal retinal pigment epithelium (HFRPE) with the gene encoding GFP. We followed the expression of this protein in vitro by fluorescence microscopy and in vivo after transplantation to the subretinal space of rabbits by scanning laser ophthalmoscopy (SLO). We demonstrated that retroviral transduction is effective, stable, and long-lasting in vitro. It allows transplanted RPE to be monitored in the subretinal space and provides a noninvasive indicator of the time course of rejection. An abstract on some of this research has been published. 5 METHODS Culturing of RPE Donor tissue was obtained from human fetal eyes, 16 to 20 weeks of gestational age. Informed consent was obtained for the use of this tissue before abortion and institutional approval was granted through an agreement between Albert Einstein College of Medicine, the source of the tissue, and Columbia University. The eye bulbs were washed externally with 70% alcohol and then with phosphate-buffered saline (PBS). The eyes were put into our standard RPE culture medium, Dulbecco's modified Eagle's medium with 4.5 g/l glucose supplemented with 20% fetal calf serum (Hyclone, Logan, Utah), 2 mM L-glutamine and penicillin (50 unit/ml)/streptomycin (50 mg/ml) (Gibco, Grand Island, NY). The anterior segment with lens, vitreous, and neural retina was removed. The posterior segment was sliced into quadrants, and RPE patches were separated gently from Bruch's membrane and choroid, using fine forceps and microscopic viewing. A distinct cleavage plane is identifiable between the taut monolayer patch of RPE and the adjacent choroid so that an isolated sheet of RPE can be pulled off. Each sheet was placed in a separate culture plate. The edges of the sheet were pressed onto the surface of the plate with the tip of a 26-gauge needle. The cultures were maintained at 37°C in an incubator with a humidified atmosphere of 95% air/5% CO 2 , fed every 3 to 4 days, and examined almost daily. To obtain cell suspensions, we washed the cells with PBS three times and exposed them to 2.5% trypsin in Hank's solution with EDTA without Ca and Mg (Gibco) for 10 minutes at 37°C. The monolayer was triturated into single cells or clusters of cells by repeated pipetting. The concentration of cells in a suspension was determined with a hemocytometer. The cells were either used for transplantation or subcultured. Preparation of Virus Stocks For the Moloney vector a DNA construct was generated consisting of the humanized red-shifted GFP (EGFP) under the translational control of an Internal Ribosome Entry Site from the encephalomyocarditis virus (EMCV-IRES), flanked by long terminal repeat (LTR) of Moloney murine leukemia virus (MoMLV). These viral sequences include the two LTRs, and the two sites for initiation of viral DNA synthesis (the primer binding site for initiation of minus-strand DNA synthesis and the polypurine tract for initiation of plus-strand synthesis). They also include the RNA packaging signal, termed the Psi region, near the 5Ј end of the genome. The construct was then introduced into AM 12 packaging cells that express the viral proteins required for the assembly of a virion particle. The viral RNA was transcribed from a transfected plasmid and selectively packaged into viral particles produced by the packaging cells. The virions were collected from the culture medium, purified, and concentrated as needed. To transduce the gene to RPE, the virus was applied directly to the target cells. Typical titers were 10 5 to 10 6 infectious units/ml. For the lentiviral vector, human immunodeficiency virus (HIV)-based preparations were generated by cotransfection of human kidney-derived 293T cells by three plasmids using the CaPO 4 method. 6 The packaging construct contained the cytomegalovirus promoter and the insulin polyadenylation signal to express all the viral proteins in trans, except the envelope and Vpu. 6 The second plasmid provided a vector with all the cis-acting elements that allow transfer and integration into the target cell. In this transducing vector, an expression cassette with the Rev responsive element (RRE) and the cytomegalovirus promoter are used to direct the expression of GFP. 6 The third plasmid provides the envelope protein from the vesicular stomatitis virus glycoprotein to enhance the viral stability and the range of possible target cells. 6 The titer of the HIV vector was determined by a fluorescent activated cell sorter (FACStar plus; Becton Dickinson, Mountain View, CA) scanning GFPtransduced cells. The lentiviral titers were determined by infection of 293 cells seeded in 6-well plates at 1 ϫ 10 5 cells per well the day before infection with serial dilution of concentrated viral stock in the presence of 8 g/ml of polybrene (Aldrich, Milwaukee, WI). After overnight incubation, the cell culture medium was changed, and the cells were incubated further for 2 days. GFP fluorescent cells were identified by fluorescent microscopy and/or the FACS. Typical titers were 10 8 to 10 9 infectious units/ml. In Vitro Transfection For viral transduction, primary cultures were dissociated into cell suspensions and subcultured in 6-well plates containing approximately 10 5 cells/well. This promotes cell division and augments the total number of cells available. After 24 hours in standard RPE culture medium, the medium was replaced with the viral solution, consisting of Hepes buffer with 20% fetal calf serum, 2 mM L-glutamine, 8 g/ml polybrene, and a viral titer of 10 5 to 10 7 infectious units/ml before concentration. This solution was replaced with fresh viral solution every 6 hours for 48 hours. After 48 hours, this solution was replaced with standard RPE medium, and the cultures were allowed to reach confluency, examined by fluorescence microscopy, and used for transplantation. For comparing viral transduction of stationary versus dividing cells, the virus was introduced directly into the primary culture containing the original patch of heavily pigmented cells, surrounded by an expanding population of dividing cells, the size of which depended on the age of the culture. To determine the fraction of cells expressing GFP, the number of GFP fluorescent cells and the total number of cells were counted within defined areas, 0.4 ϫ 0.8 mm, in the culture plate. All cells that showed green fluorescence were considered to be expressing GFP. We examined cells in the same areas in three different parts of each culture plate, the patch that contained stationary pigmented cells only, the edge of the patch where cells were migrating and entering into cell division, and the growing margin of the culture, which contained many fewer pigmented, dividing cells. We measured these same areas repeatedly in 15 different cultures, weekly for 3 weeks; 5 cultures were measured for 6 weeks, and 1 culture for 3 months. In one case, we dissociated a primary culture that we had examined for 3 months and replated the cells to follow GFP fluorescence after repeated cell division. Transplantation Thirty adult pigmented rabbits received subretinal transplants placed within small bleb detachments just below the myelinated region of the optic nerve. Bleb detachments also were formed in two rabbits with saline alone. Each animal was anesthetized with sodium pentobarbital (25 mg/kg, intramuscularly) and xylazine (10 mg/kg, intramuscularly). The pupil was dilated with 2% cyclopentolate and 2.5% neosynephrine. A lid speculum was used to keep the eye open and occasionally a canthotomy also was performed. A conjunctival flap was formed at the limbal region, and a sclerotomy made approximately 3 mm behind the limbus. A glass pipette with a tip diameter of 80 to 100 m, connected to a 1-ml syringe and filled with balanced salt solution (BSS) was introduced into the vitreal cavity. Using a corneal contact lens and a surgical microscope the pipette was directed to the retinal surface. At the surface of the retina a jet stream of BSS was slowly injected through the neural retina to produce a small bleb detachment. A second similar pipette was used to suck up a pellet of a concentrated solution of GFP-expressing HFRPE cells from the bottom of an Eppendorf tube. The cell suspension was obtained by rinsing a culture three times with PBS and then dissociating the cells with 0.05% trypsin for 5 minutes at 37°C. The cells were washed with PBS and centrifuged. The pellet was resuspended in 0.5 ml BSS, put into an Eppendorf tube, centrifuged at 1000 rpm for 2 minutes, and stored at 4°C. The cells were used within 2 hours of preparation. Approximately 10 l of cell suspension containing approximately 10 5 cells was introduced into the bleb detachment, either through the same retinotomy or through a second one; the latter method was preferable because it minimized any reflux of transplant cells into the vitreous. A small air bubble separated the suspension from the BSS solution in the pipette. The bubble also was introduced into the bleb detachment to prevent efflux of the transplant cells into the vitreous. The air bubble disappeared in 24 hours. After the pipette was removed, the sclera and conjunctiva were sutured with 9-0 nylon. Reports IOVS, August 1999, Vol. 40, No. 9 Downloaded from iovs.arvojournals.org on 06/30/2019 Retinal Examination Rabbits were examined 1 day after surgery, weekly for 8 weeks, and monthly thereafter by indirect ophthalmoscopy, SLO (Rodenstock, Munich, Germany) and sometimes by contact lens biomicroscopy. The SLO provided infrared (780 nmoles), He-Neon red (633 nmoles), argon green (514 nmoles), and blue (488 nmoles) illumination. We examined retinal fluorescence with argon blue illumination and a fluorescein barrier filter. We graded the fluorescence using a scale of 0 to 4 (0, no fluorescence,; 1, just detectable; 2, distinct; 3, strong; 4, very strong). Fluorescein and indocyanine green (ICG) angiography were performed simultaneously with an SLO double-detection system that was able to detect fluorescein and ICG simultaneously. Angiography was performed August 1999, Vol. 40, No. 9 Reports IOVS, weekly for 2 to 3 weeks and monthly thereafter. The dyes were injected into an ear vein in one bolus containing 0.2 ml fluorescein (100 mg/ml) and 0.7 ml ICG (4.2 mg/ml). Histology After the rabbit was euthanatized, the eyes were enucleated, punctured with a 20 gauge needle at several places near the limbus to facilitate diffusion, and immersed in a solution of either 3% glutaraldehyde or 4% paraformaldehyde in PBS at pH 7.2 for 24 to 48 hours at 4°C. The eyes then were washed with PBS and dissected with the aid of a microscope. The transplant site was located, examined, and cut out with its orientation marked so that the site could be reached with minimal sectioning. For Epon embedding, glutaraldehyde-fixed segments were postfixed with 1% osmic acid and dehydrated with ethanol. Sections were cut semi-serially and examined by light microscopy; selected areas were examined by electron microscopy. For cryosectioning paraformaldehyde-fixed segments were immersed in OCT compound (Miles, Elkhart, IN) and frozen by dry ice. Cryosectioning was performed on a Leica 1850 cryotome (Leica Instruments, Nusslach, Germany). Sections were mounted on gelatinized glass slides with fluoromount-G. GFP polyclonal antibody (diluted 1:100; Clontech Laboratories, Palo Alto, CA) was used for immunocytochemistry. Cultured RPE cells not exposed to the virus were used as a negative control. RESULTS GFP fluorescence was detectable in cultured HFRPE within 5 days after being exposed to the retrovirus. The MoMLV only transduced dividing cells that occurred along the edge of patch cultures spreading out centrifugally over the culture plate. 7 The lentivirus transduced both stationary and dividing cells

Shallow Water ’06 : a joint acoustic propagation/nonlinear internal wave physics experiment

Author Posting. © Oceanography Society, 2007. This article is posted here by permission of Oceanography Society for personal use, not for redistribution. The definitive version was published in Oceanography 20, 4 (2007): 156-167.Since the end of the Cold War, the US Navy has had an increasing interest in continental shelves and slopes as operational areas. To work in such areas requires a good understanding of ocean acoustics, coastal physical oceanography, and, in the modern era, autonomous underwater vehicle (AUV) operations

K0s K0s Final State in Two-Photon Collisions and Implications for Glueballs

The K0s K0s final state in two-photon collisions is studied with the L3 detector at LEP. The mass spectrum is dominated by the formation of the f_2'(1525) tensor meson in the helicity-two state with a two-photon width times the branching ratio into K Kbar of 76 +- 6 +- 11 eV. A clear signal for the formation of the f_J(1710) is observed and it is found to be dominated by the spin-two helicity-two state. No resonance is observed in the mass region around 2.2 GeV and an upper limit of 1.4 eV at 95% C.L. is derived for the two-photon width times the branching ratio into K0s K0s for the glueball candidate xi(2230)

Role of Gas6 Receptors in Platelet Signaling during Thrombus Stabilization and Implications for Antithrombotic Therapy

Mechanisms regulating thrombus stabilization remain largely unknown. Here, we report that loss of any 1 of the Gas6 receptors (Gas6-Rs), i.e., Tyro3, Axl, or Mer, or delivery of a soluble extracellular domain of Axl that traps Gas6 protects mice against life-threatening thrombosis. Loss of a Gas6-R does not prevent initial platelet aggregation but impairs subsequent stabilization of platelet aggregates, at least in part by reducing “outside-in” signaling and platelet granule secretion. Gas6, through its receptors, activates PI3K and Akt and stimulates tyrosine phosphorylation of the β3 integrin, thereby amplifying outside-in signaling via αIIbβ3. Blocking the Gas6-R–αIIbβ3 integrin cross-talk might be a novel approach to the reduction of thrombosis

Case report: The management of advanced oral cancer in a Jehovah's Witness using the Ultracision Harmonic Scalpel

We present the first case of a head and neck oncological procedure accomplished in a Jehovah's Witness using the Ultracision Harmonic Scalpel (Ethicon, Cincinnati, OH). Jehovah's Witnesses present a serious challenge to the head and neck cancer surgeon due to their refusal to accept transfusion of any blood products. However, our experience reinforces the view that surgical management of head and neck cancer is possible in these patients. We show the Harmonic Scalpel, an ultrasonic tissue dissector, to be a useful surgical tool in obviating the need for blood transfusion. Preoperative optimisation, intra-operative surgical and anaesthetic techniques are also fully discussed

The Ninth Data Release of the Sloan Digital Sky Survey: First Spectroscopic Data from the SDSS-III Baryon Oscillation Spectroscopic Survey

The Sloan Digital Sky Survey III (SDSS-III) presents the first spectroscopic data from the Baryon Oscillation Spectroscopic Survey (BOSS). This ninth data release (DR9) of the SDSS project includes 535,995 new galaxy spectra (median z=0.52), 102,100 new quasar spectra (median z=2.32), and 90,897 new stellar spectra, along with the data presented in previous data releases. These spectra were obtained with the new BOSS spectrograph and were taken between 2009 December and 2011 July. In addition, the stellar parameters pipeline, which determines radial velocities, surface temperatures, surface gravities, and metallicities of stars, has been updated and refined with improvements in temperature estimates for stars with T_eff<5000 K and in metallicity estimates for stars with [Fe/H]>-0.5. DR9 includes new stellar parameters for all stars presented in DR8, including stars from SDSS-I and II, as well as those observed as part of the SDSS-III Sloan Extension for Galactic Understanding and Exploration-2 (SEGUE-2). The astrometry error introduced in the DR8 imaging catalogs has been corrected in the DR9 data products. The next data release for SDSS-III will be in Summer 2013, which will present the first data from the Apache Point Observatory Galactic Evolution Experiment (APOGEE) along with another year of data from BOSS, followed by the final SDSS-III data release in December 2014.Comment: 9 figures; 2 tables. Submitted to ApJS. DR9 is available at http://www.sdss3.org/dr

A 220-nucleotide deletion of the intronic enhancer reveals an epigenetic hierarchy in immunoglobulin heavy chain locus activation

A tissue-specific transcriptional enhancer, Eμ, has been implicated in developmentally regulated recombination and transcription of the immunoglobulin heavy chain (IgH) gene locus. We demonstrate that deleting 220 nucleotides that constitute the core Eμ results in partially active locus, characterized by reduced histone acetylation, chromatin remodeling, transcription, and recombination, whereas other hallmarks of tissue-specific locus activation, such as loss of H3K9 dimethylation or gain of H3K4 dimethylation, are less affected. These observations define Eμ-independent and Eμ-dependent phases of locus activation that reveal an unappreciated epigenetic hierarchy in tissue-specific gene expression

The Eighth Data Release of the Sloan Digital Sky Survey: First Data from SDSS-III

The Sloan Digital Sky Survey (SDSS) started a new phase in August 2008, with new instrumentation and new surveys focused on Galactic structure and chemical evolution, measurements of the baryon oscillation feature in the clustering of galaxies and the quasar Ly alpha forest, and a radial velocity search for planets around ~8000 stars. This paper describes the first data release of SDSS-III (and the eighth counting from the beginning of the SDSS). The release includes five-band imaging of roughly 5200 deg^2 in the Southern Galactic Cap, bringing the total footprint of the SDSS imaging to 14,555 deg^2, or over a third of the Celestial Sphere. All the imaging data have been reprocessed with an improved sky-subtraction algorithm and a final, self-consistent photometric recalibration and flat-field determination. This release also includes all data from the second phase of the Sloan Extension for Galactic Understanding and Evolution (SEGUE-2), consisting of spectroscopy of approximately 118,000 stars at both high and low Galactic latitudes. All the more than half a million stellar spectra obtained with the SDSS spectrograph have been reprocessed through an improved stellar parameters pipeline, which has better determination of metallicity for high metallicity stars.Comment: Astrophysical Journal Supplements, in press (minor updates from submitted version