Klassevirus 1, a previously undescribed member of the family Picornaviridae, is globally widespread

Background Diarrhea is the third leading infectious cause of death worldwide and is estimated to be responsible for approximately 2 million deaths a year. While many infectious causes of diarrhea have been established, approximately 40% of all diarrhea cases are of unknown etiology. In an effort to identify novel viruses that may be causal agents of diarrhea, we used high throughput mass sequencing to analyze stool samples collected from patients with acute diarrhea. Results Sequences with limited similarity to known picornaviruses were detected in a stool sample collected in Australia from a child with acute diarrhea. Using a combination of mass sequencing, RT-PCR, 5' RACE and 3' RACE, a 6383 bp fragment of the viral genome was sequenced. Phylogenetic analysis demonstrated that this virus was highly divergent from, but most closely related to, members of the genus Kobuvirus. We have tentatively named this novel virus klassevirus 1. We also detected klassevirus 1 by RT-PCR in a diarrhea specimen collected from a patient in St. Louis, United States as well as in untreated sewage collected in Barcelona, Spain. Conclusion Klassevirus 1 is a previously undescribed picornavirus that is globally widespread and present on at least three continents. Further investigations to determine whether klassevirus 1 is a human pathogen are needed

Estimation of the interfacial shears strength, orientation factor and mean equivalent intrinsic tensile strength in old newspaper fiber/polypropylene composites

The present paper investigates the suitability of old newspapers (ONPs) as a source of reinforcing fibers for composite materials. Different percentages of ONP fibers were compounded with polypropylene (PP). A coupling agent was added to the compound to improve the interface between matrix and reinforcing fibers. Tensile test were performed to obtain the mechanical properties of the composite materials. Micromechanics of the fibers were obtained using Hirsch model, Bowyer Bader methodology and Kelly-Tyson equations. Due to the presence of a percentage of calcium carbonate in the obtained fibers (10%), the computed intrinsic characteristics were addressed as equivalent. The most important results were the mean equivalent intrinsic tensile strength of the ONP fibers, the mean orientation angle and the mean interfacial shear strength. The contributions of the matrix, the subcritical and the supercritical fibers to the tensile strength of the composite material were also computed. (C) 2013 Elsevier Ltd. All rights reserved.Serrano, A.; Espinach, FX.; Julian, F.; Rey Tormos, RMD.; Mendez, JA.; Mutje, P. (2013). Estimation of the interfacial shears strength, orientation factor and mean equivalent intrinsic tensile strength in old newspaper fiber/polypropylene composites. Composites Part B: Engineering. 50:232-238. doi:10.1016/j.compositesb.2013.02.018S2322385

Effects of climate, species interactions, and dispersal on decadal colonization and extinction rates of Iberian tree species

We studied the relative importance of climate, abundance of potentially competing species, and dispersal in explaining local colonization and extinction rates of tree species throughout mainland Spain. We used a Bayesian framework to parameterize a patch occupancy model to 23 species censused in 46,596 permanent plots in a 1 × 1 km grid across most Spanish forests. For most species, dispersal was the single best predictor of colonization, whereas climate and dispersal were equally important as predictors of extinction. Precipitation was positively correlated with the colonization rate of 12 out of 13 deciduous broad-leaved species, and negatively correlated with the extinction rate of nine of them. In contrast, precipitation equally decreased colonization and extinction of five out of eight of needle-leaved species (Juniperus and Pinus spp.). There was, however, marked variation among species in the magnitude of these effects, with some species exhibiting contrasting patterns for the colonization and the extinction process. Abundance of competing tree species (= summed plot basal area) was consistently correlated with decreased colonization of all needle-leaved species, and it increased the extinction rate of 6 out of 8 of these species. It had, nonetheless, weak facilitative effect on some broad-leaved species by promoting colonization (3 of 13 species) and decreasing extinction (7 of 13 species). With local colonization and extinction data, non-equilibrial and dynamic species distribution modelling can be improved by incorporating measures of biotic interactions and dispersal effects, along with traditional climate variables.Ministerio de Economía y CompetitividadComunidad de Madri

Evaluating the combined effects of climate and land-use change on tree species distributions

A large proportion of the world's biodiversity is reportedly threatened by habitat loss and climate change. However, there are few studies that investigate the interaction between these two threats using empirical data.Here, we investigate interactions between climate change and land use change in the future distribution of 23 dominant tree species in mainland Spain. We simulated changes up to year 2100 using a climate-dependent Stochastic Patch Occupancy Model, parameterized with colonization and extinction events recorded in 46 569 survey plots.We estimated that the distribution of 17 out of 23 tree species are expanding, and hence not at equilibrium with the climate. However, climate change will make the future occupancy of 15 species lower than expected if climate, and habitat, remained stable (baseline scenario).Climate change, when combined with 20% habitat loss, was estimated to reduce species occupancy by an average of 23% if habitat loss is spatially clumped, relative to baseline projections, and by 35% if scattered. If habitat loss occurred in areas already impacted by human activities, species occupancy would be reduced by 26%. Land-use changes leading to habitat gain (i.e. creation through e.g. reforestation), could slightly mitigate the effects of climate change; but a 20% increment in habitat would reduce climate-change-driven losses in species occupancy by only ~3%.Synthesis and applications. The distributions of the most common tree species in mainlandSpain are expanding, but climate change threatens to reduce this expansion by 18% for 15of the 23 studied species. Moreover, if the habitat of these species is simultaneously lost, theoccupancies of all of them will be reduced further, with variation depending on the spatialpattern of the lost habitats. However, we did not detect synergies between climate change andhabitat loss. The combined effect (with 20% habitat loss) was 5–13% less than what it wouldbe if the effects were additive. Importantly, reforestation could partially offset the negativeeffects of climate change, but complete mitigation would require an increase in forested landof 80%, and the prioritization of territories that are less impacted by human activities.Ministerio de Economía y CompetitividadComunidad de Madri

Detection and quantification of classic and emerging viruses by skimmed-milk flocculation and PCR in river water from two geographical areas

Molecular techniques and virus concentration methods have shown that previously unknown viruses are shed by humans and animals, and may be transmitted by sewage-contaminated water. In the present study, river water from urban areas in Barcelona, Spain and Rio de Janeiro, Brazil, were analyzed to evaluate the dissemination of human viruses, while simultaneously optimizing and validating a low-cost concentration method for virus quantification in fresh water. The following three viral groups were analyzed. (i) Recently described viruses: klassevirus (KV), asfarvirus-like virus (ASFLV), and the polyomaviruses Merkel cell, KI and WU (MCPyV/KIPyV/WUPyV). (ii) Gastroenteritis agents: noroviruses (NoV) and rotaviruses (RV). (iii) Human fecal viral indicators in water: human adenoviruses (HAdV) and JC polyomaviruses (JCPyV). Virus detection was based on nested and quantitative PCR assays. Nested PCR assays were developed for KV and ASFLV. The method applied for virus concentration in water samples was a one-step procedure based on a skimmed milk flocculation procedure described previously for seawater. Using spiked river water samples, inter- and intra-laboratory assays showed a viral recovery rate of about 50% for HAdV, JCPyV, NoV and RV with a coefficient of variation ≤ 50%. HAdV and JCPyV were detected in 100% of the river samples from Barcelona and Rio de Janeiro. Moreover, NoV GGII was detected in 100% and MCPyV in 50% of the samples from Barcelona, whereas none of the other viruses analyzed were detected. NoV GGII was detected in 33%, KV in 33%, ASFLV in 17% and MCPyV in 50% of the samples from Rio de Janeiro, whereas KIPyV and WUPyV were not detected. RV were only tested for in Rio de Janeiro and resulted positive in 67% of the samples. The procedure applied here to river water represents a useful, straightforward and cost-effective method that could be applied in routine water quality testing.  The results of the assays expand our understanding of the global distribution of the viral pathogens studied here and their persistence in the environment. Fil: Calgua, B.. Universidad de Barcelona; España;Fil: Fumian, T.. Ministerio de Salud de Brasil. Fundacion Oswaldo Cruz; Brasil;Fil: Rusinol, M.. Universidad de Barcelona; España;Fil: Rodríguez Manzano, J.. Universidad de Barcelona; España;Fil: Mbayed, Viviana Andrea. Universidad de Buenos Aires. Facultad de Farmacia y Bioquímica. Departamento de Microbiología, Inmunología y Biotecnología. Cátedra de Virología; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Houssay; ArgentinaFil: Bofill Mas, S.. Universidad de Barcelona; España;Fil: Miagostovich, M.. Ministerio de Salud de Brasil. Fundacion Oswaldo Cruz; Brasil;Fil: Girones, R.. Universidad de Barcelona; España

The Self Model and the Conception of Biological Identity in Immunology

The self/non-self model, first proposed by F.M. Burnet, has dominated immunology for sixty years now. According to this model, any foreign element will trigger an immune reaction in an organism, whereas endogenous elements will not, in normal circumstances, induce an immune reaction. In this paper we show that the self/non-self model is no longer an appropriate explanation of experimental data in immunology, and that this inadequacy may be rooted in an excessively strong metaphysical conception of biological identity. We suggest that another hypothesis, one based on the notion of continuity, gives a better account of immune phenomena. Finally, we underscore the mapping between this metaphysical deflation from self to continuity in immunology and the philosophical debate between substantialism and empiricism about identity

Macro and micromechanics analysis of short fiber composites stiffness: The case of old newspaper fibers-polypropylene composites

Stiffness is one of the most relevant characteristics of composite materials. Natural wood fibers have demonstrated their ability to increase the Young's moduli of composite materials, and old newspapers are a potential source of reinforcing fibers for composite materials. There are some micromechanic models to predict the Young's modulus of composite materials, and one of the input data is the intrinsic modulus of their fibers. This intrinsic modulus is a value which is difficult or impossible to measure in the case of wood fibers, due to their measures. This paper evaluates the stiffening abilities of old newspaper fibers and the possibility to back calculate the value of the intrinsic Young's Modulus by means of micromechanic models. Different percentages of old newspaper fibers were compounded with polypropylene (PP). Micromechanics of the fibers were obtained using Hirsch model, Cox-Krenchel's model, Tsai-Pagano model and Halpin-Tsai equations. The most important results were the average intrinsic Young's modulus of the fibers, the mean orientation angle and the mean modulus efficiency factor.Serrano, A.; Espinach, FX.; Tresserras, J.; Rey Tormos, RMD.; Pellicer, N.; Mutje Pujol, P. (2014). Macro and micromechanics analysis of short fiber composites stiffness: The case of old newspaper fibers-polypropylene composites. Materials and Design. 55:319-324. doi:10.1016/j.matdes.2013.10.011S3193245

The Miniaturized Moessbauer Spectrometers MIMOS II on MER: Four Years of Operation - A Summary

The two Miniaturized Moessbauer Spectrometers (MIMOS II) on board the two Mars Exploration Rovers Spirit and Opportunity have now been collecting important scientific data for more than four years. The spectrometers provide information about Fe-bearing mineral phases and determine Fe oxidation states. The total amount of targets analized exceeds 600, the total integration time exceeds 260 days for both rovers. Since landing, more than five half-lives of the Co-57 MB sources have past (intensity at the time of landing approx. 150 mCi). Current integration times are about 50 hours in order to achieve reasonable statistics as opposed to 8 hours at the beginning of the mission. In total, 13 different mineral phases were detected: Olivine, pyroxene, hematite, magnetite and nanophase ferric oxide were detected at both landing sites. At Gusev, ilmenite, goethite, a ferric sulfate phase and a yet unassigned phase (in the rock Fuzzy Smith) were detected. At Meridiani, jarosite, metallic iron in meteoritic samples (kamacite), troilite, and an unassigned ferric phase were detected. Jarosite and goethite are of special interest, as these minerals are indicators for water activity. In this abstract, an overview of Moessbauer results will be given, with a focus on data obtained since the last martian winter. The MER mission has proven that Moessbauer spectroscopy is a valuable tool for the in situ exploration of extraterrestrial bodies and for the study of Febearing samples. The experience gained through the MER mission makes MIMOS II a obvious choice for future missions to Mars and other targets. Currently, MIMOS II is on the scientific payload of two approved future missions: Phobos Grunt (Russian Space Agency; 2009) and ExoMars (European Space Agency; 2013)

Harnessing interactive technologies to improve health outcomes in juvenile idiopathic arthritis

Background: Children and adolescents with Juvenile Idiopathic Arthritis (JIA) typically have reduced physical activity level and impaired aerobic and anaerobic exercise capacity when compared to their non-JIA counterparts. Low intensity exercise regimens appear to be safe in children with JIA and may results in improvements in overall physical function. Poor adherence to paediatric rheumatology treatment may lead to negative clinical outcomes and possibly increased disease activity. This includes symptoms such as pain, fatigue, quality of life, longer term outcomes including joint damage, as well as increase of healthcare associated costs. Low adherence to medications such as methotrexate and biological-drugs remains a significant issue for paediatric rheumatologists, with alarming reports that less than half of the children with JIA are compliant to drug-therapy. Main body: The recent advances in interactive technology resulting in a variety of wearable user-friendly smart devices may become a key solution to address important questions in JIA clinical management. Fully understanding the impact that arthritis and treatment complications have upon individual children and their families has long been a challenge for clinicians. Modern interactive technologies can be customised and accessed directly in the hands or wrists of children with JIA. These secured networks could be accessible 'live' at anytime and anywhere by the child, parents and clinicians. Multidisciplinary teams in paediatric rheumatology may benefit from adopting these technologies to better understand domains such as patient biological parameters, symptoms progression, adherence to drug-therapy, quality of life, and participation in physical activities. Most importantly the use of smart devices technologies may also facilitate more timely clinical decisions, improve self-management and parents awareness in the progression of their child's disease. Paediatric rheumatology research could also benefit from the use of these smart devices, as they would allow real-time access to meaningful data to thoroughly understand the disease-patterns of JIA, such as pain and physical activity outcomes. Data collection that typically occurs once every 1 or 3 months in the clinical setting could instead be gathered every week, day, minute or virtually live online. Arguably, few limitations in wearing such interactive technologies still exist and require further developments. Conclusion: Finally, by embracing and adapting these new and now highly accessible interactive technologies, clinical management and research in paediatric rheumatology may be greatly advanced.sch_pod1. Australian Institute of Health and Welfare, [AIHW]. What is juvenile arthritis? 2015. http://www.aihw.gov.au/juvenile-arthritis. Accessed 24 May 2016. 2. Bouaddi I, Rostom S, El Badri D, Hassani A, Chkirate B, Amine B, et al. Impact of juvenile idiopathic arthritis on schooling. BMC Pediatr. 2013; doi:10.1186/1471-2431-13-2. 3. Laila K, Haque M, Islam MM, Islam MI, Talukder MK, Rahman SA. Impact of Juvenile Idiopathic Arthritis on School Attendance and Performance. American Journal of Clinical and Experimental Medicine. 2016; doi:10.11648/j.ajcem.20160406.15 4. Schatz BR. National Surveys of population health: big data analytics for mobile health monitors. Big Data. 2015; 1;3(4):219-229. 5. Cingi C, Yorgancioglu A, Cingi CC, Oguzulgen K, Muluk NB, Ulusoy S, et al. The physician on call patient engagement trial- (POPET): measuring the impact of a mobile patient engagement application on health outcomes and quality of life in allergic rhinitis and asthma patients. Forum Allergy Rhinol 2015; doi:10.1002/alr.21468. 6. Stinson JN, Jibb LA, Nguyen C, Nathan PC, Maloney AM, Dupuis LL, et al. Construct validity and reliability of a real-time multidimensional smartphone app to assess pain in children and adolescents with cancer. Pain. 2015; doi:10.1097/j.pain.0000000000000385. 7. Tong A, Jones J, Craig JC, Singh-Grewal D. Children's experiences of living with juvenile idiopathic arthritis: a thematic synthesis of qualitative studies. Arthritis Care Res, 2012; doi:10.1002/acr.21695 8. Nishiguchi S, Ito H, Yamada M, Yoshitomi H, Furu M, Shinohara A, et al. Selfassessment of Rheumatoid Arthritis Disease Activity Using a Smartphone Application. Development and 3-month Feasibility Study. J Rheumatol. 2010; doi:10.3899/jrheum.091327. 9. de Jongh T, Gurol-Urganci I, Vodopivec-Jamsek V, Car J, Atun R. Mobile phone messaging for facilitating self-management of long-term illnesses. Cochrane Database Syst Rev. 2012; doi:10.1002/14651858.CD007459. 10. Majeed-Ariss R, Baildam E, Campbell M, Chieng A, Fallon D, Hall A, et al. Apps and Adolescents: A Systematic Review of Adolescents' Use of Mobile Phone and Tablet Apps That Support Personal Management of Their Chronic or Long-Term Physical Conditions. J Med Internet Res. 2015; doi:10.2196/jmir.5043. 11. Szer IS, Kimura Y, Malleson PN, Southwood TR. Arthritis in children and adolescents: juvenile idiopathic arthritis. New York: Oxford University Press; 2006. 12. Bugni VM, Ozaki LS, Okamoto KY, Barbosa CM, Hilrio MO, Len CA, et al. Factors associated with adherence to treatment in children and adolescents with chronic rheumatic disease. J Pediatr (Rio J). 2012; doi:10.2223/JPED.2227 13. Pelajo CF, Sgarlat CM, Lopez-Benitez JM, Oliveira SK, Rodrigues MC, Sztajnbok FR, et al. Adherence to methotrexate in juvenile idiopathic arthritis. Rheumatol Int. 2012; doi:10.1007/s00296-010-1774. 14. Nickels A, Dimov V. Innovations in technology: social media and mobile technology in the care of adolescents with asthma. Curr Allergy Asthma Rep. 2012; doi:10.1007/s11882-012-0299-7. 15. Koster ES, Philbert D, de Vries TW, van Dijk L, Bouvy ML. I just forget to take it-: asthma self-management needs and preferences in adolescents. J Asthma. 2015; doi: 10.3109/02770903.2015.1020388. 16. Crosby LE, Barach I, McGrady ME, Kalinyak KA, Eastin AR, Mitchell MJ. Integrating interactive web-based technology to assess adherence and clinical outcomes in pediatric sickle cell disease. Anemia. 2012; doi:10.1155/2012/492428. 17. Lelieveld OT, van Brussel M, Takken T, van Weert E, van Leeuwen MA, Armbrust W. Aerobic and anaerobic exercise capacity in adolescents with juvenile idiopathic arthritis. Arthritis Rheum 2007; doi:10.1002/art.22897 18. Singh-Grewal, D, Schneiderman-Walker, J, Wright, V, Bar-Or, O, Beyene, J, Selvadurai, H, et al. (2007). The Effects of Vigorous Exercise Training on Physical Function in Children With Arthritis: A Randomized, Controlled, Single-Blinded Trial. Arthritis Care and Research. 2007; doi:10.1002/art.23008. 19. Raustorp A, Pagels P, Froberg A, Boldemann C. Physical activity decreased by a quarter in the 11- to 12-year-old Swedish boys between 2000 and 2013 but was stable in girls: a smartphone effect? Acta Paediatr. 2015; doi:10.1111/apa.13027. 20. ACMA, Australia's mobile digital economy - ACMA confirms usage, choice, mobility and intensity on the rise, a.C.A.M: authority editor; 2013. 21. Google. Google Cloud Platform Security [Internet]. Google. 2016. https:// cloud.google.com/security. Accessed 13 Oct 2016. 22. Apple. iOS Security - Report No.: 9.3 or Later. 2016; https://www.apple.com/ business/docs/iOS_Security_Guide.pdf. Accessed 13 Oct 2016.15pub4780pub

The PAU survey: classifying low-z SEDs using Machine Learning clustering

This is a pre-copyedited, author-produced PDF of an article accepted for publication in Monthly Notices of the Royal Astronomical Society following peer review. The version of record Monthly Notices of the Royal Astronomical Society 524.3 (2023): 3569-3581 is available online at: https://academic.oup.com/mnras/article-abstract/524/3/3569/7225529?redirectedFrom=fulltextWe present an application of unsupervised Machine Learning clustering to the PAU survey of galaxy spectral energy distribution (SED) within the COSMOS field. The clustering algorithm is implemented and optimized to get the relevant groups in the data SEDs. We find 12 groups from a total number of 5234 targets in the survey at 0.01 < z < 0.28. Among the groups, 3545 galaxies (68 per cent) show emission lines in the SEDs. These groups also include 1689 old galaxies with no active star formation. We have fitted the SED to every single galaxy in each group with CIGALE. The mass, age, and specific star formation rates (sSFR) of the galaxies range from 0.15 < age/Gyr <11; 6 < log (M/M⊙) <11.26, and -14.67 < log (sSFR/yr-1) <-8. The groups are well-defined in their properties with galaxies having clear emission lines also having lower mass, are younger and have higher sSFR than those with elliptical like patterns. The characteristic values of galaxies showing clear emission lines are in agreement with the literature for starburst galaxies in COSMOS and GOODS-N fields at low redshift. The star-forming main sequence, sSFR versus stellar mass and UVJ diagram show clearly that different groups fall into different regions with some overlap among groups. Our main result is that the joint of low- resolution (R ∼50) photometric spectra provided by the PAU survey together with the unsupervised classification provides an excellent way to classify galaxies. Moreover, it helps to find and extend the analysis of extreme ELGs to lower masses and lower SFRs in the local UniverseThis work has been supported by the Ministry of Science and Innovation of Spain, project PID2019-107408GB-C43 (ESTALLIDOS), and the Government of the Canary Islands through EU FEDER funding, projects PID2020010050 and PID2021010077. This article is based on observations made in the Observatorios de Canarias of the Instituto de Astrofísica de Canarias (IAC) with the WHT operated on the island of La Palma by the Isaac Newton Group of Telescopes (ING) in the Observatorio del Roque de los Muchachos. The PAU Survey is partially supported by MINECO under grants CSD2007-00060, AYA2015-71825, ESP2017-89838, PGC2018-094773, PGC2018-102021, PID2019-111317GB, SEV-2016-0588, SEV-2016-0597, MDM-2015-0509 and Juan de la Cierva fellowship and LACEGAL and EWC Marie Sklodowska-Curie grant No 734374 and no.776247 with ERDF funds from the EU Horizon 2020 Programme, some of which include ERDF funds from the European Union. IEEC and IFAE are partially funded by the CERCA and Beatriu de Pinos program of the Generalitat de Catalunya. Funding for PAUS has also been provided by Durham Univer sity (via the ERC StG DEGAS-259586), ETH Zurich, Leiden University (via ERC StG ADULT-279396 and Netherlands Organisation for Scientific Research (NWO) Vici grant 639.043.512), University College London and from the European Union’s Horizon 2020 research and innovation programme under the grant agreement No 776247 EWC. The PAU data center is hosted by the Port d’Información Científica (PIC), maintained through a collaboration of CIEMAT and IFAE, with additional support from Universitat Autónoma de Barcelona and ERDF. We acknowledge the PIC services department team for their support and fruitful discussion