2,253 research outputs found

    The inner nuclear membrane protein Src1 associates with subtelomeric genes and alters their regulated gene expression

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    Inner nuclear membrane proteins containing a LEM (LAP2, emerin, and MAN1) domain participate in different processes, including chromatin organization, gene expression, and nuclear envelope biogenesis. In this study, we identify a robust genetic interaction between transcription export (TREX) factors and yeast Src1, an integral inner nuclear membrane protein that is homologous to vertebrate LEM2. DNA macroarray analysis revealed that the expression of the phosphate-regulated genes PHO11, PHO12, and PHO84 is up-regulated in src1Δ cells. Notably, these PHO genes are located in subtelomeric regions of chromatin and exhibit a perinuclear location in vivo. Src1 spans the nuclear membrane twice and exposes its N and C domains with putative DNA-binding motifs to the nucleoplasm. Genome-wide chromatin immunoprecipitation–on-chip analyses indicated that Src1 is highly enriched at telomeres and subtelomeric regions of the yeast chromosomes. Our data show that the inner nuclear membrane protein Src1 functions at the interface between subtelomeric gene expression and TREX-dependent messenger RNA export through the nuclear pore complexes

    Simple strong glass forming models: mean-field solution with activation

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    We introduce simple models, inspired by previous models for froths and covalent glasses, with trivial equilibrium properties but dynamical behaviour characteristic of strong glass forming systems. These models are also a generalization of backgammon or urn models to a non--constant number of particles, where entropic barriers are replaced by energy barriers, allowing for the existence of activated processes. We formulate a mean--field version of the models, which keeps most of the features of the finite dimensional ones, and solve analytically the out--of--equilibrium dynamics in the low temperature regime where activation plays an essential role.Comment: 18 pages, 9 figure

    New mobilities across the lifecourse: A framework for analysing demographically-linked drivers of migration

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    Date of acceptance: 17/02/2015Taking the life course as the central concern, the authors set out a conceptual framework and define some key research questions for a programme of research that explores how the linked lives of mobile people are situated in time–space within the economic, social, and cultural structures of contemporary society. Drawing on methodologically innovative techniques, these perspectives can offer new insights into the changing nature and meanings of migration across the life course.Publisher PDFPeer reviewe

    The WFC3 Galactic Bulge Treasury Program: A First Look at Resolved Stellar Population Tools

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    [Abridged] When WFC3 is installed on HST, the community will have powerful new tools for investigating resolved stellar populations. The WFC3 Galactic Bulge Treasury program will obtain deep imaging on 4 low-extinction fields. These non-proprietary data will enable a variety of science investigations not possible with previous data sets. To aid in planning for the use of these data and for future proposals, we provide an introduction to the program, its photometric system, and the associated calibration effort. The observing strategy is based upon a new 5-band photometric system spanning the UV, optical, and near-infrared. With these broad bands, one can construct reddening-free indices of Teff and [Fe/H]. Besides the 4 bulge fields, the program will target 6 fields in well-studied star clusters, spanning a wide range of [Fe/H]. The cluster data serve to calibrate the indices, provide population templates, and correct the transformation of isochrones into the WFC3 photometric system. The bulge data will shed light on the bulge formation history, and will also serve as population templates for other studies. One of the fields includes 12 candidate hosts of extrasolar planets. CMDs are the most popular tool for analyzing resolved stellar populations. However, due to degeneracies among Teff, [Fe/H], and reddening in traditional CMDs, it can be difficult to draw robust conclusions from the data. The 5-band system used for the bulge Treasury observations will provide indices that are roughly orthogonal in Teff and [Fe/H], and we argue that model fitting in an index-index diagram will make better use of the information than fitting separate CMDs. We provide simulations to show the expected data quality and the potential for differentiating between different star-formation histories.Comment: Accepted for publication in The Astronomical Journal. 9 pages, 8 figures, latex, AJ forma

    Inverse Estimation of an Annual Cycle of California's Nitrous Oxide Emissions

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    Nitrous oxide (N_2O) is a potent long‐lived greenhouse gas (GHG) and the strongest current emissions of global anthropogenic stratospheric ozone depletion weighted by its ozone depletion potential. In California, N_2O is the third largest contributor to the state's anthropogenic GHG emission inventory, though no study has quantified its statewide annual emissions through top‐down inverse modeling. Here we present the first annual (2013–2014) statewide top‐down estimates of anthropogenic N_2O emissions. Utilizing continuous N_2O observations from six sites across California in a hierarchical Bayesian inversion, we estimate that annual anthropogenic emissions are 1.5–2.5 times (at 95% confidence) the state inventory (41 Gg N_2O in 2014). Without mitigation, this estimate represents 4–7% of total GHG emissions assuming that other reported GHG emissions are reasonably correct. This suggests that control of N_2O could be an important component in meeting California's emission reduction goals of 40% and 80% below 1990 levels of the total GHG emissions (in CO_2 equivalent) by 2030 and 2050, respectively. Our seasonality analysis suggests that emissions are similar across seasons within posterior uncertainties. Future work is needed to provide source attribution for subregions and further characterization of seasonal variability

    Thermophile 90S Pre-ribosome Structures Reveal the Reverse Order of Co-transcriptional 18S rRNA Subdomain Integration

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    The ‘birth’ of the eukaryotic ribosome is preceded by RNA folding and processing reactions that depend on assembly factors and snoRNAs. The 90S (SSU-processome) is the earliest pre-ribosome structurally analyzed, which was suggested to assemble stepwise along the growing pre-rRNA from 5’>3’, but this directionality may not be accurate. Here, by analyzing the structure of series of novel 90S assembly intermediates isolated from Chaetomium thermophilum, we discover a reverse order of 18S rRNA subdomain incorporation. This revealed that large parts of the 18S rRNA 3’ and central domains assemble first into the 90S, before the 5’ domain is stably integrated. This final incorporation depends on a physical contact between a heterotrimer Enp2-Bfr2-Lcp1 recruited to the flexible 5’ domain and Kre33, which reconstitutes the Kre33-Enp-Brf2-Lcp5 module on the compacted 90S pre-ribosome. Keeping the 5’ domain temporarily segregated from the 90S scaffold could provide an extra time to complete the multifaceted 5’ domain folding, which depends on a distinct set of snoRNAs and processing factors
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