Comparative analysis of morphological and morphometrical characters in six isolates of Pratylenchus vulnus Allen & Jensen, 1951 (Nemata : Tylenchida)

Six populations de #Pratylenchus vulnus$ Allen & Jensen, 1951 provenant d'Europe et d'Amérique ont été analysées du point de vue morphologique et morphométrique. Certaines différences ont été observées pour quelques caractères morphologiques (structure du sac post-vulvaire, forme de la spermathèque, largeur des champs latéraux). Par contre, des différences significatives concernant tous les caractères morphométriques (excepté le rapport "m") ont été constatées entre les populations. Une analyse de corrélation canonique montre que les relations entre populations pourraient être fonction de leur origine géographique et/ou de leur plante hôte. (Résumé d'auteur

Molecular dynamics simulations reveal canonical conformations in different pMHC/TCR interactions

The major defense system against microbial pathogens in vertebrates is the adaptive immune response and represents an effective mechanism in cancer surveillance. T cells represent an essential component of this complex system. They can recognize myriads of antigens as short peptides (p) originated from the intracellular degradation of foreign proteins presented by major histocompatibility complex (MHC) proteins. The clonotypic T-cell antigen receptor (TCR) is specialized in recognizing pMHC and triggering T cells immune response. It is still unclear how TCR engagement to pMHC is translated into the intracellular signal that initiates T-cell immune response. Some work has suggested the possibility that pMHC binding induces in the TCR conformational changes transmitted to its companion CD3 subunits that govern signaling. The conformational changes would promote phosphorylation of the CD3 complex ζ chain that initiates signal propagation intracellularly. Here, we used all-atom molecular dynamics simulations (MDs) of 500 ns to analyze the conformational behavior of three TCRs (1G4, ILA1 and ILA1α1β1) interacting with the same MHC class I (HLA-A*02:01) bound to different peptides, and modelled in the presence of a lipid bilayer. Our data suggest a correlation between the conformations explored by the β-chain constant regions and the T-cell response experimentally determined. In particular, independently by the TCR type involved in the interaction, the TCR activation seems to be linked to a specific zone of the conformational space explored by the β-chain constant region. Moreover, TCR ligation restricts the conformational space the MHC class I groove

Variabilidad de los caracteres morfométricos y morfológicos de una población de Criconemetia curvata ( Raski, 1952 ) Luc & Raski, 1981 (Nematoda: Tylenchida)

Se llevó a cabo un estudio de la variabilidad de los calacteres morfométricos y morfológicos de una pobación (hembras y larvas) del nematodo fitófago Criconemella C'urvata (Raski, 1952) Luc & Raski, 1981 proveniente de Córdoba, Argentina. Dicha variablidad fue conocida en base a: análisis estadístico de cada uno de los caracteres morfométricos y análisis de la frecuencia relativa de cada carácter morfológico dentro de la población. En el caso particular de las larvas, se demuestra que la utilización de la longitud de la porción cónica del est Tete permite discriminar con precisión los diferentes estadios. Se efectuó un estudio crítico de la importancia de cada grupo de caracteres en la definición de la especi

Assessing soil P fractions changes with long-term phosphorus fertilization related to crop yield of soybean and maize

Long-term P Fertiliser application increases soil phosphorus (P) labile fractions, which can be associated with crop P uptake and grain yield and are useful to improve fertilizer recommendations. Research aims were to evaluate in long-term experiments with different P Fertiliser application in a Mollisol and a Vertisol: (a) the changes of soil P fractions and (b) the relationship between soil P fractions with long-term P Fertiliser application, with accumulated apparent P budget, grain P, total P uptake, soybean (Glycine max L.Merr.) and maize (Zea mays L.) grain yield. Soil P fractions were measured after 1 and 9 year since the beginning of the long-term experiments. Experiments included an initial Fertiliser application rate of 200 kg P ha−1 and annual P Fertiliser application rate of 36 kg P ha−1. Bray1-P, total, organic, and inorganic P in fine (53 μm) (CF) soil fractions, and in NaHCO3 extract were measured. Initial P Fertiliser application increased inorganic and total P fractions. However, Bray1-P, total P in NaHCO3 extract and in the CF were the fractions that most increased with continuous long-term P Fertiliser application in both sites. In the Mollisol, maize grain yield was unrelated to long-term P Fertiliser application. In the Vertisol, total P in NaHCO3 extract, and total and organic P in the CF were more closely related to soybean grain yield than Bray1-P. We proposed soil P indices of labile inorganic and organic P that showed close relationships with soybean grain yield and may be useful to improve the diagnosis of P soil fertility.Fil: Appelhans, Stefania Carolina. Universidad Nacional de Entre Ríos. Facultad de Ciencias Agropecuarias. Departamento de Producción Vegetal; Argentina. Instituto Nacional de Tecnología Agropecuaria. Centro Regional Entre Ríos. Estación Experimental Agropecuaria Paraná; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Barbagelata, Pedro Aníbal. Universidad Nacional de Entre Ríos. Facultad de Ciencias Agropecuarias. Departamento de Producción Vegetal; Argentina. Instituto Nacional de Tecnología Agropecuaria. Centro Regional Entre Ríos. Estación Experimental Agropecuaria Paraná; ArgentinaFil: Melchiori, Ricardo José Miguel. Instituto Nacional de Tecnología Agropecuaria. Centro Regional Entre Ríos. Estación Experimental Agropecuaria Paraná; ArgentinaFil: Gutiérrez Boem, Flavio Hernán. Universidad de Buenos Aires. Facultad de Agronomía. Departamento de Ingeniería Agrícola y Uso de la Tierra. Cátedra de Fertilidad y Fertilizantes; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Instituto de Investigaciones en Biociencias Agrícolas y Ambientales. Universidad de Buenos Aires. Facultad de Agronomía. Instituto de Investigaciones en Biociencias Agrícolas y Ambientales; Argentin

Coexistence and Within-Host Evolution of Diversified Lineages of Hypermutable Pseudomonas aeruginosa in Long-term Cystic Fibrosis Infections

The advent of high-throughput sequencing techniques has made it possible to follow the genomic evolution of pathogenic bacteria by comparing longitudinally collected bacteria sampled from human hosts. Such studies in the context of chronic airway infections by Pseudomonas aeruginosa in cystic fibrosis (CF) patients have indicated high bacterial population diversity. Such diversity may be driven by hypermutability resulting from DNA mismatch repair system (MRS) deficiency, a common trait evolved by P. aeruginosa strains in CF infections. No studies to date have utilized whole-genome sequencing to investigate within-host population diversity or long-term evolution of mutators in CF airways. We sequenced the genomes of 13 and 14 isolates of P. aeruginosa mutator populations from an Argentinian and a Danish CF patient, respectively. Our collection of isolates spanned 6 and 20 years of patient infection history, respectively. We sequenced 11 isolates from a single sample from each patient to allow in-depth analysis of population diversity. Each patient was infected by clonal populations of bacteria that were dominated by mutators. The in vivo mutation rate of the populations was ∼100 SNPs/year-∼40-fold higher than rates in normo-mutable populations. Comparison of the genomes of 11 isolates from the same sample showed extensive within-patient genomic diversification; the populations were composed of different sub-lineages that had coexisted for many years since the initial colonization of the patient. Analysis of the mutations identified genes that underwent convergent evolution across lineages and sub-lineages, suggesting that the genes were targeted by mutation to optimize pathogenic fitness. Parallel evolution was observed in reduction of overall catabolic capacity of the populations. These findings are useful for understanding the evolution of pathogen populations and identifying new targets for control of chronic infections

Soil quality assessment based on soil organic matter pools under long‐term tillage systems and following tillage conversion in a semi‐humid region

A field study was conducted to assess the long-term effects of no-tillage (NT) and conventional tillage (CT), and the short-term effects following tillage conversion -from CT to NT (NTn) and from NT to CT (CTn) on soil quality (SQ) indicators in a semi-humid climate. First, plots of a long-term tillage experiment on a Luvic Phaeozem initiated in 1986, were split into two subplots in 2012, yielding four treatments: NT, CT, NTn and CTn. In 2015, composite soil samples were collected from each treatment and from a natural site (Ref) at depths 0-5, 5-10, 10-20 and 0-20 cm. Several indicators were determined: soil organic carbon (SOC) and nitrogen (SON); particulate organic C (POM-C) and N (POM-N); potential N mineralization (PMN) and soil respiration (Rs). Moreover, bulk density was determined in long-term tillage systems. Different ratios between indicators were calculated, with emphasis on its function in the agroecosystem, i.e. functional indicators. Significant differences in SOC, SON and PMN were found between CT and NT at most depths. In contrast, three years after tillage conversion, only a part of the SQ indicators studied were modified mainly at the 0-10 cm depth. The functional indicators showed differences between tillage systems in the long-term and after short-term tillage conversion depending on the depth; however, the PMN/SON ratio demonstrated differences at all depths. Under these conditions, this ratio -related to easily mineralizable N fraction- proved to be a promising indicator for assessing SQ under contrasting tillage systems regardless of the sampling depth.Fil: Martinez, Juan Manuel. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Bahía Blanca. Centro de Recursos Naturales Renovables de la Zona Semiárida. Universidad Nacional del Sur. Centro de Recursos Naturales Renovables de la Zona Semiárida; ArgentinaFil: Galantini, Juan Alberto. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Bahía Blanca. Centro de Recursos Naturales Renovables de la Zona Semiárida. Universidad Nacional del Sur. Centro de Recursos Naturales Renovables de la Zona Semiárida; Argentina. Provincia de Buenos Aires. Gobernación. Comisión de Investigaciones Científicas; ArgentinaFil: Duval, Matias Ezequiel. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Bahía Blanca. Centro de Recursos Naturales Renovables de la Zona Semiárida. Universidad Nacional del Sur. Centro de Recursos Naturales Renovables de la Zona Semiárida; Argentina. Universidad Nacional del Sur. Departamento de Agronomía; ArgentinaFil: López, Fernando Manuel. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Bahía Blanca. Centro de Recursos Naturales Renovables de la Zona Semiárida. Universidad Nacional del Sur. Centro de Recursos Naturales Renovables de la Zona Semiárida; Argentin

A Longitudinal Cline Characterizes the Genetic Structure of Human Populations in the Tibetan Plateau

Indigenous populations of the Tibetan plateau have attracted much attention for their good performance at extreme high altitude. Most genetic studies of Tibetan adaptations have used genetic variation data at the genome scale, while genetic inferences about their de- mography and population structure are largely based on uniparental markers. To provide genome-wide information on population structure, we analyzed new and published data of 338 individuals from indigenous populations across the plateau in conjunction with world- wide genetic variation data. We found a clear signal of genetic stratification across the east- west axis within Tibetan samples. Samples from more eastern locations tend to have higher genetic affinity with lowland East Asians, which can be explained by more gene flow from lowland East Asia onto the plateau. Our findings corroborate a previous report of admixture signals in Tibetans, which were based on a subset of the samples analyzed here, but add evidence for isolation by distance in a broader geospatial context

Functional conservation of the grapevine candidate gene INNER NO OUTER for ovule development and seed formation

Seedlessness represents a highly appreciated trait in table grapes. Based on an interesting case of seedless fruit production described in the crop species Annona squamosa, we focused on the Vitis vinifera INNER NO OUTER (INO) gene as a candidate. This gene encodes a transcription factor belonging to the YABBY family involved in the determination of abaxial identity in several organs. In Arabidopsis thaliana, this gene was shown to be essential for the formation and asymmetric growth of the ovule outer integument and its mutation leads to a phenotypic defect of ovules and failure in seed formation. In this study, we identified in silico the V. vinifera orthologue and investigated its phylogenetic relationship to INO genes from other species and its expression in different organs in seeded and seedless varieties. Applying cross-species complementation, we have tested its functionality in the Arabidopsis ino-1 mutant. We show that the V. vinifera INO successfully rescues the ovule outer integument growth and seeds set and also partially complements the outer integument asymmetric growth in the Arabidopsis mutant, differently from orthologues from other species. These data demonstrate that VviINO retains similar activity and protein targets in grapevine as in Arabidopsis. Potential implications for grapevine breeding are discussed

Differentially expressed genes in potato sprouts after potassium phosphite application

We are studying the role of phosphites in disease control management, yield and potato tuber quality. In brief, our previous results showed a number of promising properties associated with these compounds. When we applied potassium phosphites (KPhi) at 3 litre $latex ha^{-1}$ to seed tubers immediately after cutting, this promoted early emergence, an increased in stem number and diameter, early tuber initiation and an increased in the number of tubers per plant. In addition to these physiological effects, phosphite treatment also resulted in greater resistance in seed tubers to Phytophthora infestans, Fusarium solani and Rhizoctonia solani. In order to understand the mechanisms which regulate these responses, we analyzed the changes in gene expression in tubers seeds at early stage of sprouting after KPhi treatment. Preliminary results of microarray analysis from potato sprouts treated or not with KPhi, showed that 26 genes were upregulated in the treated ones. These genes were classified into 5 groups: plant defense, metabolism, abiotic stress, transcription factors and unknown genes. We performed semiquantitative RT-PCR assays of some of these genes to validate the results. Interestingly one of these genes was CULLIN 1, involved in jasmonic acid mediated signaling pathway. This result may support the hypothesis that phophites could be involved in triggering IR (induced resistant)