RNA modifications regulating cell fate in cancer.

The deposition of chemical modifications into RNA is a crucial regulator of temporal and spatial gene expression programs during development. Accordingly, altered RNA modification patterns are widely linked to developmental diseases. Recently, the dysregulation of RNA modification pathways also emerged as a contributor to cancer. By modulating cell survival, differentiation, migration and drug resistance, RNA modifications add another regulatory layer of complexity to most aspects of tumourigenesis.M.F. is supported by a Cancer Research UK Senior Fellowship (C10701/A15181), the European Research Council (ERC; 310360), and the Medical Research Council UK (MR/M01939X/1). S.D. is funded by an EMBO Long-Term Fellowship. Part of this work was carried out in the framework of the European COST action EPITRAN 1612

Intérêt de la chromatographie liquide d'interactions hydrophiles pour l'analyse de composés polaires dans des matrices complexes

Peer reviewe

Study of mechanical behavior on single use bags welding under gamma irradiation

Since a long time, biopharmaceutical industry utilizes more and more single use plastic bags due to its very easy use (long shelf-lives, mechanical properties), preparation, and storage properties (oxygen and water barriers). These plastic bags are composed of two welded multilayer polymer films. To ensure the function of the closure and the non-contamination from the external environment, welding must answer to several parameters according to norm (“ISO 15747,” 2018) and standard (F02 Committee, n.d.). In this present study, the behavior of weldings on Ethylene Vinyl Acetate (EVA) single use bags under gamma irradiation have been studied. Mechanical tests have been performed at several gamma irradiation doses (from 0 kGy to 270 kGy) and at different location of the bag (Figure 1). The first objective is to study the impact of gamma irradiation dose on the welding mechanical tensile behavior. The second objective is to evaluate the impact of the welding location on the welding tensile properties. Each tensile curve (Figure 2) has been decomposed in 6 characteristic points which were evaluated with Principal Component Analysis (PCA): Ultimate Tensile strength at break (UTS), Ultimate elongation or elongation at break, 1st Yield-Strength (Y1 Strength), 1st Yield-Strain (Y1 Strain), 2nd Yield-Strength (Y2 Strength), 2nd Yield-Strain (Y2 Strain). The study showed that weldings are never impacted during tensile testing: this evaluation reveals that in fine the film cracks before the welding modification. Its function of closure and bag content preservation from external environment is fully achieved whatever the gamma irradiation dose and the welding location. Only the multilayer film on both sides of the welding is altered after 100% elongation strain. The EVA bag showed no degradation up to 115 kGy whereas they become to be altered at 270 kGy. The welding location on EVA bag showed different film mechanical behavior correlated to the polymer film extrusion process orientation. Please click Additional Files below to see the full abstract

Model-based Investigation of the Coupling between the Cell Cycle and the Circadian Clock in Mouse Embryonic Fibroblasts

Experimental observations have put in evidence autonomous self-sustained cir-cadian oscillators in most mammalian cells, and proved the existence of molecular links between the circadian clock and the cell cycle. Some mathematical models have also been built to assess conditions of control of the cell cycle by the circadian clock. However, recent studies in individual NIH3T3 fibroblasts have shown an unexpected acceleration of the circadian clock together with the cell cycle when the milieu is enriched in FBS, the absence of such acceleration in confluent cells, and the absence of any period doubling phenomena. In order to explain these observations, we study a possible entrainment of the circadian clock by the cell cycle through a regulation of clock genes around the mitosis phase. We develop a computational model and a formal specification of the observed behavior to investigate the conditions of entrainment in period and phase. We show that either the selective inhibition of Bmal1 transcription, or the selective activation of RevErb-α at the end of the mitosis phase, allow us to fit the experimental data, while a uniform inhibition of transcription during mitosis seems incompatible with the phase data. We conclude on some further $ This article is the extended revision of a preliminary communication published in [1]. Email addresses: [email protected] (Pauline Traynard), [email protected] (Céline Feillet), [email protected] (Sylvain Soliman), [email protected] (Franck Delaunay), [email protected] (François Fages) Preprint submitted to Elsevier December 19, 2015 predictions of the model

Unusual hydrogen and hydroxyl migration in the fragmentation of excited doubly-positively-charged amino acids in the gas phase

We present a combined experimental and theoretical study of the fragmentation of doubly-positively- charged amino acids in the gas phase. The combination of ab initio molecular dynamics simulations with ion- molecule collisions followed by multiple-coincidence mass spectrometric techniques, allows us to obtain a complete picture of the fragmentation dynamics. In addition to the expected Coulomb explosion, we have found evidence of hydrogen and hydroxyl-group migration processes, which leads to unusual fragmentation product

Charge and energy flows in ionised thymidine

We present a combined experimental and theoretical study of the ionisation and fragmentation of the nucleoside thymidine in the gas phase. Two sources of ionisation/excitation are used, namely UV photons and low-energy multiply charged ions, associated with coincidences measurements, respectively photoelec- tron/photofragment (PEPICO) and fragment/fragment. Coupling these experiments with quantum chemistry calculations, we obtain a complete picture of the fragmentation dynamics, in particular the charge and energy transfers within the molecular edific

Physiologically relevant reconstitution of iron-sulfur cluster biosynthesis uncovers persulfide- processing functions of ferredoxin-2 and frataxin

Iron-sulfur (Fe-S) clusters are essential protein cofactors whose biosynthetic defects lead to severe diseases among which is Friedreich's ataxia caused by impaired expression of frataxin (FXN). Fe-S clusters are biosynthesized on the scaffold protein ISCU, with cysteine desulfurase NFS1 providing sulfur as persulfide and ferredoxin FDX2 supplying electrons, in a process stimulated by FXN but not clearly understood. Here, we report the breakdown of this process, made possible by removing a zinc ion in ISCU that hinders iron insertion and promotes non-physiological Fe-S cluster synthesis from free sulfide in vitro. By binding zinc-free ISCU, iron drives persulfide uptake from NFS1 and allows persulfide reduction into sulfide by FDX2, thereby coordinating sulfide production with its availability to generate Fe-S clusters. FXN stimulates the whole process by accelerating persulfide transfer. We propose that this reconstitution recapitulates physiological conditions which provides a model for Fe-S cluster biosynthesis, clarifies the roles of FDX2 and FXN and may help develop Friedreich's ataxia therapies