An alternative carrier solvent for fingermark enhancement reagents

Solstice® Performance Fluid (PF), trans-1-chloro-3,3,3-trifluoropropene, is presented as an alternative to HFE7100, methoxy-nonafluorobutane, as a carrier solvent in a number of chemical formulations used for the visualisation of latent fingermarks. The supply of HFE7100 may be at riskdue to a recent European Union regulation to control global warming. Laboratory trials using split depletions and a pseudo-operational trial of 1000 porous samples have shown that Solstice® PF is a viable alternative to HFE7100 for the chemical formulations of ninhydrin and 1,2-indanedione. Other preliminary trials have also indicated that Solstice® PF can be used as a carrier solvent for the zinc toning of marks found using ninhydrin as well as the α-naphtholflavone fixative solution for iodine developed marks. Results from the pseudo-operational trial demonstrate that the number of marks detected by ninhydrin and 1,2-indanedione formulations for each carrier solvent is comparable. When compared to HFE7100, advantages of Solstice® PF include a very low global warming potential and atmospheric lifetime in addition to a higher wetting index and lower costs. This study also provides a validation study that supports the potential replacement of DFO with 1,2-indanedione

Pre-combustion gas separation by ZIF-8-polybenzimidazole mixed matrix membranes in the form of hollow fibres—long-term experimental study

Polybenzimidazole (PBI) is a promising and suitable membrane polymer for the separation of the H2/CO2 pre-combustion gas mixture due to its high performance in terms of chemical and thermal stability and intrinsic H2/CO2 selectivity. However, there is a lack of long-term separation studies with this polymer, particularly when it is conformed as hollow fibre membrane. This work reports the continuous measurement of the H2/CO2 separation properties of PBI hollow fibres, prepared as mixed matrix membranes with metal-organic framework (MOF) ZIF-8 as filler. To enhance the scope of the experimental approach, ZIF-8 was synthesized from the transformation of ZIF-L upon up-scaling the MOF synthesis into a 1 kg batch. The effects of membrane healing with poly(dimethylsiloxane), to avoid cracks and non-selective gaps, and operation conditions (use of sweep gas or not) were also examined at 200°C during approximately 51 days. In these conditions, for all the membrane samples studied, the H2 permeance was in the 22–47 GPU range corresponding to 22–32 H2/CO2 selectivity values. Finally, this work continues our previous report on this type of application (Etxeberria-Benavides et al. 2020 Sep. Purif. Technol.237, 116347 (doi:10.1016/j.seppur.2019.116347)) with important novelties dealing with the use of ZIF-8 for the mixed matrix membrane coming from a green methodology, the long-term gas separation testing for more than 50 days and the study on the membrane operation under more realistic conditions (e.g. without the use of sweep gas)

Touchstone Stars: Highlights from the Cool Stars 18 Splinter Session

We present a summary of the splinter session on "touchstone stars" -- stars with directly measured parameters -- that was organized as part of the Cool Stars 18 conference. We discuss several methods to precisely determine cool star properties such as masses and radii from eclipsing binaries, and radii and effective temperatures from interferometry. We highlight recent results in identifying and measuring parameters for touchstone stars, and ongoing efforts to use touchstone stars to determine parameters for other stars. We conclude by comparing the results of touchstone stars with cool star models, noting some unusual patterns in the differences.Comment: Proceedings of the 18th Cambridge Workshop on Cool Stars, Stellar Systems, and the Sun, Eds G. van Belle & H. Harri

The JCSG high-throughput structural biology pipeline

The Joint Center for Structural Genomics high-throughput structural biology pipeline has delivered more than 1000 structures to the community over the past ten years and has made a significant contribution to the overall goal of the NIH Protein Structure Initiative (PSI) of expanding structural coverage of the protein universe

The Mass-Radius(-Rotation?) Relation for Low-Mass Stars

The fundamental properties of low-mass stars are not as well understood as those of their more massive counterparts. The best method for constraining these properties, especially masses and radii, is to study eclipsing binary systems, but only a small number of late-type (M0 or later) systems have been identified and well-characterized to date. We present the discovery and characterization of six new M dwarf eclipsing binary systems. The twelve stars in these eclipsing systems have masses spanning 0.38-0.59 Msun and orbital periods of 0.6--1.7 days, with typical uncertainties of ~0.3% in mass and 0.5--2.0% in radius. Combined with six known systems with high-precision measurements, our results reveal an intriguing trend in the low-mass regime. For stars with M=0.35-0.80 Msun, components in short-period binary systems (P<1 day; 12 stars) have radii which are inflated by up to 10% (mean=4.8+/-1.0%) with respect to evolutionary models for low-mass main-sequence stars, whereas components in longer-period systems (>1.5 days; 12 stars) tend to have smaller radii (mean=1.7+/-0.7%). This trend supports the hypothesis that short-period systems are inflated by the influence of the close companion, most likely because they are tidally locked into very high rotation speeds that enhance activity and inhibit convection. In summary, very close binary systems are not representative of typical M dwarfs, but our results for longer-period systems indicate that the evolutionary models are broadly valid in the M~0.35-0.80 Msun regime.Comment: Accepted to ApJ; 21 pages, 10 figures, 8 tables in emulateapj format. The full contents of Table 4 are included in the submission as tab4.tx

Structure of the first representative of Pfam family PF04016 (DUF364) reveals enolase and Rossmann-like folds that combine to form a unique active site with a possible role in heavy-metal chelation.

The crystal structure of Dhaf4260 from Desulfitobacterium hafniense DCB-2 was determined by single-wavelength anomalous diffraction (SAD) to a resolution of 2.01 Å using the semi-automated high-throughput pipeline of the Joint Center for Structural Genomics (JCSG) as part of the NIGMS Protein Structure Initiative (PSI). This protein structure is the first representative of the PF04016 (DUF364) Pfam family and reveals a novel combination of two well known domains (an enolase N-terminal-like fold followed by a Rossmann-like domain). Structural and bioinformatic analyses reveal partial similarities to Rossmann-like methyltransferases, with residues from the enolase-like fold combining to form a unique active site that is likely to be involved in the condensation or hydrolysis of molecules implicated in the synthesis of flavins, pterins or other siderophores. The genome context of Dhaf4260 and homologs additionally supports a role in heavy-metal chelation

Structure of a putative NTP pyrophosphohydrolase: YP_001813558.1 from Exiguobacterium sibiricum 255-15.

The crystal structure of a putative NTPase, YP_001813558.1 from Exiguobacterium sibiricum 255-15 (PF09934, DUF2166) was determined to 1.78 Å resolution. YP_001813558.1 and its homologs (dimeric dUTPases, MazG proteins and HisE-encoded phosphoribosyl ATP pyrophosphohydrolases) form a superfamily of all-α-helical NTP pyrophosphatases. In dimeric dUTPase-like proteins, a central four-helix bundle forms the active site. However, in YP_001813558.1, an unexpected intertwined swapping of two of the helices that compose the conserved helix bundle results in a `linked dimer' that has not previously been observed for this family. Interestingly, despite this novel mode of dimerization, the metal-binding site for divalent cations, such as magnesium, that are essential for NTPase activity is still conserved. Furthermore, the active-site residues that are involved in sugar binding of the NTPs are also conserved when compared with other α-helical NTPases, but those that recognize the nucleotide bases are not conserved, suggesting a different substrate specificity

Structure of the γ-D-glutamyl-L-diamino acid endopeptidase YkfC from Bacillus cereus in complex with L-Ala-γ-D-Glu: insights into substrate recognition by NlpC/P60 cysteine peptidases.

Dipeptidyl-peptidase VI from Bacillus sphaericus and YkfC from Bacillus subtilis have both previously been characterized as highly specific γ-D-glutamyl-L-diamino acid endopeptidases. The crystal structure of a YkfC ortholog from Bacillus cereus (BcYkfC) at 1.8 Å resolution revealed that it contains two N-terminal bacterial SH3 (SH3b) domains in addition to the C-terminal catalytic NlpC/P60 domain that is ubiquitous in the very large family of cell-wall-related cysteine peptidases. A bound reaction product (L-Ala-γ-D-Glu) enabled the identification of conserved sequence and structural signatures for recognition of L-Ala and γ-D-Glu and, therefore, provides a clear framework for understanding the substrate specificity observed in dipeptidyl-peptidase VI, YkfC and other NlpC/P60 domains in general. The first SH3b domain plays an important role in defining substrate specificity by contributing to the formation of the active site, such that only murein peptides with a free N-terminal alanine are allowed. A conserved tyrosine in the SH3b domain of the YkfC subfamily is correlated with the presence of a conserved acidic residue in the NlpC/P60 domain and both residues interact with the free amine group of the alanine. This structural feature allows the definition of a subfamily of NlpC/P60 enzymes with the same N-terminal substrate requirements, including a previously characterized cyanobacterial L-alanine-γ-D-glutamate endopeptidase that contains the two key components (an NlpC/P60 domain attached to an SH3b domain) for assembly of a YkfC-like active site

The structure of BVU2987 from Bacteroides vulgatus reveals a superfamily of bacterial periplasmic proteins with possible inhibitory function.

Proteins that contain the DUF2874 domain constitute a new Pfam family PF11396. Members of this family have predominantly been identified in microbes found in the human gut and oral cavity. The crystal structure of one member of this family, BVU2987 from Bacteroides vulgatus, has been determined, revealing a β-lactamase inhibitor protein-like structure with a tandem repeat of domains. Sequence analysis and structural comparisons reveal that BVU2987 and other DUF2874 proteins are related to β-lactamase inhibitor protein, PepSY and SmpA_OmlA proteins and hence are likely to function as inhibitory proteins