Vertical and interhemispheric links in the stratosphere-mesosphere as revealed by the day-to-day variability of Aura-MLS temperature data

The coupling processes in the middle atmosphere have been a subject of intense research activity because of their effects on atmospheric circulation, structure, variability, and the distribution of chemical constituents. In this study, the day-to-day variability of Aura-MLS (Microwave Limb Sounder) temperature data are used to reveal the vertical and interhemispheric coupling processes in the stratosphere-mesosphere during four Northern Hemisphere winters (2004/2005–2007/2008). The UKMO (United Kingdom Meteorological Office) assimilated data and mesospheric winds from MF (medium frequency) radars are also applied to help highlight the coupling processes. In this study, a clear vertical link can be seen between the stratosphere and mesosphere during winter months. The coolings and reversals of northward meridional winds in the polar winter mesosphere are often observed in relation to warming events (Sudden Stratospheric Warming, SSW for short) and the associated changes in zonal winds in the polar winter stratosphere. An upper-mesospheric cooling usually precedes the beginning of the warming in the stratosphere by 1–2 days. Inter-hemispheric coupling has been identified initially by a correlation analysis using the year-to-year monthly zonal mean temperature. Then the correlation analyses are performed based upon the daily zonal mean temperature. From the original time sequences, significant positive (negative) correlations are generally found between zonal mean temperatures at the Antarctic summer mesopause and in the Arctic winter stratosphere (mesosphere) during northern mid-winters, although these correlations are dominated by the low frequency variability (i.e. the seasonal trend). Using the short-term oscillations (less than 15 days), the statistical result, by looking for the largest magnitude of correlation within a range of time-lags (0 to 10 days; positive lags mean that the Antarctic summer mesopause is lagging), indicates that the temporal variability of zonal mean temperature at the Antarctic summer mesopause is also positively (negatively) correlated with the polar winter stratosphere (mesosphere) during three (2004/2005, 2005/2006, and 2007/2008) out of the four winters. The highest value of the correlation coefficient is over 0.7 in the winter-stratosphere for the three winters. The remaining winter (2006/2007) has more complex correlations structures; correspondingly the polar vortex was distinguished this winter. The time-lags obtained for 2004/2005 and 2006/2007 are distinct from 2005/2006 and 2007/2008 where a 6-day lag dominates for the coupling between the winter stratosphere and the summer mesopause. The correlations are also provided using temperatures in northern longitudinal sectors in a comparison with the Antarctic-mesopause zonal mean temperature. For northern mid-high latitudes (~50–70° N), temperatures in Scandinavia-Eastern Europe and in the Pacific-Western Canada longitudinal sectors often have opposite signs of correlations with zonal mean temperatures near the Antarctic summer mesopause during northern mid-winters. The statistical results are shown to be associated with the Northern Hemisphere's polar vortex characteristics

Comments on "Note on varying speed of light theories"

In a recent note Ellis criticizes varying speed of light theories on the grounds of a number of foundational issues. His reflections provide us with an opportunity to clarify some fundamental matters pertaining to these theories

Review of AdS/CFT Integrability, Chapter V.2: Dual Superconformal Symmetry

Scattering amplitudes in planar N=4 super Yang-Mills theory reveal a remarkable symmetry structure. In addition to the superconformal symmetry of the Lagrangian of the theory, the planar amplitudes exhibit a dual superconformal symmetry. The presence of this additional symmetry imposes strong restrictions on the amplitudes and is connected to a duality relating scattering amplitudes to Wilson loops defined on polygonal light-like contours. The combination of the superconformal and dual superconformal symmetries gives rise to a Yangian, an algebraic structure which is known to be related to the appearance of integrability in other regimes of the theory. We discuss two dual formulations of the symmetry and address the classification of its invariants.Comment: 22 pages, see also overview article arXiv:1012.3982, v2: references to other chapters updated, v3 added references, typos fixe

The effect of memory on relaxation in a scalar field theory

We derive a kinetic equation with a non-Markovian collision term which includes a memory effect, from Kadanoff-Baym equations in $\phi^4$ theory within the three-loop level for the two-particle irreducible (2PI) effective action. The memory effect is incorporated into the kinetic equation by a generalized Kadanoff-Baym ansatz.Based on the kinetic equations with and without the memory effect, we investigate an influence of this effect on decay of a single particle excitation with zero momentum in 3+1 dimensions and the spatially homogeneous case. Numerical results show that, while the time evolution of the zero mode is completely unaffected by the memory effect due to a separation of scales in the weak coupling regime, this effect leads first to faster relaxation than the case without it and then to slower relaxation as the coupling constant increases.Comment: 12 pages, 6 eps figure

An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics

For a decade, The Cancer Genome Atlas (TCGA) program collected clinicopathologic annotation data along with multi-platform molecular profiles of more than 11,000 human tumors across 33 different cancer types. TCGA clinical data contain key features representing the democratized nature of the data collection process. To ensure proper use of this large clinical dataset associated with genomic features, we developed a standardized dataset named the TCGA Pan-Cancer Clinical Data Resource (TCGA-CDR), which includes four major clinical outcome endpoints. In addition to detailing major challenges and statistical limitations encountered during the effort of integrating the acquired clinical data, we present a summary that includes endpoint usage recommendations for each cancer type. These TCGA-CDR findings appear to be consistent with cancer genomics studies independent of the TCGA effort and provide opportunities for investigating cancer biology using clinical correlates at an unprecedented scale. Analysis of clinicopathologic annotations for over 11,000 cancer patients in the TCGA program leads to the generation of TCGA Clinical Data Resource, which provides recommendations of clinical outcome endpoint usage for 33 cancer types

Use of SMS texts for facilitating access to online alcohol interventions: a feasibility study

A41 Use of SMS texts for facilitating access to online alcohol interventions: a feasibility study In: Addiction Science & Clinical Practice 2017, 12(Suppl 1): A4

Driver Fusions and Their Implications in the Development and Treatment of Human Cancers.

Gene fusions represent an important class of somatic alterations in cancer. We systematically investigated fusions in 9,624 tumors across 33 cancer types using multiple fusion calling tools. We identified a total of 25,664 fusions, with a 63% validation rate. Integration of gene expression, copy number, and fusion annotation data revealed that fusions involving oncogenes tend to exhibit increased expression, whereas fusions involving tumor suppressors have the opposite effect. For fusions involving kinases, we found 1,275 with an intact kinase domain, the proportion of which varied significantly across cancer types. Our study suggests that fusions drive the development of 16.5% of cancer cases and function as the sole driver in more than 1% of them. Finally, we identified druggable fusions involving genes such as TMPRSS2, RET, FGFR3, ALK, and ESR1 in 6.0% of cases, and we predicted immunogenic peptides, suggesting that fusions may provide leads for targeted drug and immune therapy

Genome-Wide Association Study in BRCA1 Mutation Carriers Identifies Novel Loci Associated with Breast and Ovarian Cancer Risk

BRCA1-associated breast and ovarian cancer risks can be modified by common genetic variants. To identify further cancer risk-modifying loci, we performed a multi-stage GWAS of 11,705 BRCA1 carriers (of whom 5,920 were diagnosed with breast and 1,839 were diagnosed with ovarian cancer), with a further replication in an additional sample of 2,646 BRCA1 carriers. We identified a novel breast cancer risk modifier locus at 1q32 for BRCA1 carriers (rs2290854, P = 2.7×10-8, HR = 1.14, 95% CI: 1.09-1.20). In addition, we identified two novel ovarian cancer risk modifier loci: 17q21.31 (rs17631303, P = 1.4×10-8, HR = 1.27, 95% CI: 1.17-1.38) and 4q32.3 (rs4691139, P = 3.4×10-8, HR = 1.20, 95% CI: 1.17-1.38). The 4q32.3 locus was not associated with ovarian cancer risk in the general population or BRCA2 carriers, suggesting a BRCA1-specific associat

Oncogenic Signaling Pathways in The Cancer Genome Atlas

Genetic alterations in signaling pathways that control cell-cycle progression, apoptosis, and cell growth are common hallmarks of cancer, but the extent, mechanisms, and co-occurrence of alterations in these pathways differ between individual tumors and tumor types. Using mutations, copy-number changes, mRNA expression, gene fusions and DNA methylation in 9,125 tumors profiled by The Cancer Genome Atlas (TCGA), we analyzed the mechanisms and patterns of somatic alterations in ten canonical pathways: cell cycle, Hippo, Myc, Notch, Nrf2, PI-3-Kinase/Akt, RTK-RAS, TGFb signaling, p53 and beta-catenin/Wnt. We charted the detailed landscape of pathway alterations in 33 cancer types, stratified into 64 subtypes, and identified patterns of co-occurrence and mutual exclusivity. Eighty-nine percent of tumors had at least one driver alteration in these one alteration potentially targetable by currently available drugs. Thirty percent of tumors had multiple targetable alterations, indicating opportunities for combination therapy