A personal experience of performing a systematic literature review

This paper describes the personal experience of two novice reviewers in developing and conducting a systematic literature review (SLR) in the field of medical ultrasound. The review was performed as part of a PhD study by the first author, which required the researcher to critically review all relevant studies in their specific research area. The review was conducted using a formal, scientific process and highlighted 20 relevant papers. Among the lessons learnt, undertaking an SLR was a time-consuming process. The search produced 1,987 papers, and screening the search yield was facilitated by using a pre-defined protocol. Extraction of data from each study was standardised and generated a 1-page summary of the key findings and methodology to facilitate comparisons of the included studies. The Critical Appraisal Skills Programme (CASP) tool was used for quality assessment. In the critical appraisal process, it is essential that reviewers have good baseline knowledge in the research subject, a solid understanding of the fundamentals of a robust research study including potential bias in research. With the great amount of information that a critical appraisal produces, good information management was key throughout the review to ensure the process was explicit and replicable and so that reviewers could justify their decisions. The methods and processes detailed in this report, as well as its lessons, are relevant to an SLR for any research subject

Australian Cosmic Ray Modulation Research

Australian research into variations of the cosmic ray flux arriving at the Earth has played a pivotal role for more than 50 years. The work has been largely led by the groups from the University of Tasmania and the Australian Antarctic Division and has involved the operation of neutron monitors and muon telescopes from many sites. In this paper the achievements of the Australian researchers are reviewed and future experiments are described. Particular highlights include: the determination of cosmic ray modulation parameters; the development of modelling techniques of Ground Level Enhancements; the confirmation of the Tail-In and Loss-Cone Sidereal anisotropies; the Space Ship Earth collaboration; and the Solar Cycle latitude survey.Comment: 47 pages, 37 figures, LaTeX, invited review, in press PASA 18(1). HTML version available at http://www.atnf.csiro.au/pasa/18_1/duldig/paper

UV exposure causes energy trade-offs leading to increased chytrid fungus susceptibility in green tree frog larvae

Levels of ultraviolet (UV) radiation have increased in many parts of the world due to the anthropogenic destruction of the ozone layer. UV radiation is a potent immunosuppressant and can increase the susceptibility of animal hosts to pathogens. UV radiation can directly alter immune function via immunosuppression and photoimmunotolerance; however, UV may also influence pathogen defences by affecting the distribution of energy resources among competing physiological processes. Both defence against UV damage and repair of incurred damage, as well as the maintenance of immune defences and responding to an immune challenge, are energetically expensive. These competing demands for finite energy resources could trade off against one another, resulting in sub-optimal performance in one or both processes. We examined the potential for a disease-related energy trade-off in green tree frog (Litoria caerulea) larvae. Larvae were reared under high- or low-UV conditions for 12 weeks during which time we measured growth rates, metabolic rate and susceptibility to the amphibian fungal pathogen, Batrachochytrium dendrobatidis (Bd). We found that larvae exposed to high levels of UV radiation had higher rates of energy expenditure than those exposed to low UV levels; however, UV exposure did not affect growth rates or developmental timings. Larvae exposed to high UV radiation also experienced greater Bd infection rates and carried a higher infection burden than those not exposed to elevated UV radiation. We propose that the increased energetic costs of responding to UV radiation were traded off against immune defences to protect larval growth rates. These findings have important implications for the aetiology of some Bd-associated amphibian declines, particularly in montane environments where Bd infections are most severe and where UV levels are highest

Adaptive latitudinal variation in Common Blackbird Turdus merula nest characteristics

Nest construction is taxonomically widespread, yet our understanding of adaptive intraspecific variation in nest design remains poor. Nest characteristics are expected to vary adaptively in response to predictable variation in spring temperatures over large spatial scales, yet such variation in nest design remains largely overlooked, particularly amongst open-cup-nesting birds. Here, we systematically examined the effects of latitudinal variation in spring temperatures and precipitation on the morphology, volume, composition, and insulatory properties of open-cup-nesting Common Blackbirds’ Turdus merula nests to test the hypothesis that birds living in cooler environments at more northerly latitudes would build better insulated nests than conspecifics living in warmer environments at more southerly latitudes. As spring temperatures increased with decreasing latitude, the external diameter of nests decreased. However, as nest wall thickness also decreased, there was no variation in the diameter of the internal nest cups. Only the mass of dry grasses within nests decreased with warmer temperatures at lower latitudes. The insulatory properties of nests declined with warmer temperatures at lower latitudes and nests containing greater amounts of dry grasses had higher insulatory properties. The insulatory properties of nests decreased with warmer temperatures at lower latitudes, via changes in morphology (wall thickness) and composition (dry grasses). Meanwhile, spring precipitation did not vary with latitude, and none of the nest characteristics varied with spring precipitation. This suggests that Common Blackbirds nesting at higher latitudes were building nests with thicker walls in order to counteract the cooler temperatures. We have provided evidence that the nest construction behavior of open-cup-nesting birds systematically varies in response to large-scale spatial variation in spring temperatures

Bacteria and the evolution of honest signals. The case of ornamental throat feathers in spotless starlings

1. Mechanisms guaranteeing reliability of messages are essential in understanding the underlying information and evolution of signals. Micro-organisms may degrade signalling traits and therefore influence the transmitted information and evolution of these characters. The role of micro-organisms in animal signalling has, however, rarely been investigated. 2. Here, we explore a possible role for feather-degrading bacteria driving the design of ornamental throat feathers in male spotless starlings (Sturnus unicolor). We estimated length, bacterial load, degradation status and susceptibility to degradation by keratinolytic bacteria in those feathers, compared with non-ornamental adjacent feathers in males, as well as to throat feathers in females. In addition, the volume of the uropygial gland and its secretion was measured and the secretion extracted. We also experimentally evaluated the capacity of each secretion to inhibit growth of a keratinolytic bacterium. 3. The apical part of male ornamental throat feathers harboured more bacteria and degraded more quickly than the basal part; these patterns were not detected in female throat feathers or in non-ornamental male feathers. Moreover, degradation status of male and female throat feathers did not differ, but was positively associated with feather bacterial density. Finally, the size of the uropygial gland in both males and females predicted volume and the inhibitory capacity of secretion against feather-degrading bacteria. Only in males was uropygial gland size negatively associated with the level of feather degradation. 4. All results indicate differential susceptibility of different parts of throat feathers to keratinolytic bacterial attack, which supports the possibility that throat feathers in starlings reflect individual ability to combat feather-degrading bacteria honestly. This is further supported by the relationship detected between antimicrobial properties of uropygial secretion and the level of feather degradation. 5. Our results suggest that selection pressures exerted by feather-degrading bacteria on hosts may promote evolution of particular morphologies of secondary sexual traits with different susceptibility to bacterial degradation that reliably inform of their bacterial load. Those results will help to understand the evolution of ornamental signals.This work was financed by Spanish Ministerio de Ciencia e Innovaci on, European funds (FEDER) (CGL2010-19233-C03-01, CGL2013-48193-C3-1-P). MRR and DMG received a postdoc from the program “JAE-Doc”, GT from the “Juan de la Cierva”, and CRC had a predoctoral fellowship, all from the Spanish Government.Peer reviewe

Coping with climatic extremes: Dietary fat content decreased the thermal resilience of barramundi (Lates calcarifer)

Aquatic organisms, including important cultured species, are forced to contend with acute changes in water temperature as the frequency and intensity of extreme weather events worsen. Acute temperature spikes are likely to threaten aquaculture species, but dietary intervention may play an important protective role. Increasing the concentration of macronutrients, for example dietary fat content, may improve the thermal resilience of aquaculture species, however, this remains unexplored. To evaluate this hypothesis, we used two commercially available diets (20% versus 10% crude fat) to examine if dietary fat content improves the growth performance of juvenile barramundi (Lates calcarifer) while increasing their resilience to acute thermal stress. Fish were fed their assigned diets for 28-days before assessing the upper thermal tolerance (CTMAX) and the thermal sensitivity of swimming performance (UCRIT) and metabolism. We found that feeding fish a high fat diet resulted in heavier fish, but did not affect the thermal sensitivity of swimming performance or metabolism over an 18 °C temperature range (from 20 to 38 °C). Thermal tolerance was compromised in fish fed the high fat diet by 0.48 °C, showing significantly lower CTMAX. Together, these results suggest that while a high fat diet increases juvenile L. calcarifer growth, it does not benefit physiological performance across a range of relevant water temperatures and may even reduce fish tolerance of extreme water temperatures. These data may have implications for aquaculture production in a warming world, where episodic extremes of temperature are likely to become more frequent

A decrease in diet quality occurs during pregnancy in overweight and obese women which is maintained post-partum

BACKGROUND: Ensuring adequate dietary intake during pregnancy has important implications for optimising maternal and fetal health. It is not known whether diet quality is altered over pregnancy and the post-partum period. OBJECTIVE: The aim of this study was to perform a comprehensive assessment of diet quality in overweight and obese women during pregnancy and early post-partum. DESIGN: In a prospective cohort study, n=301 overweight or obese pregnant women completed a food frequency questionnaire at study entry (10–20 weeks gestation), 28 weeks gestation, 36 weeks gestation and 4 months post-partum for assessment of macronutrient and micronutrient intake and diet quality by the Healthy Eating Index (HEI). RESULTS: Energy, macronutrient and dietary sources of micronutrients did not alter across pregnancy or post-partum. The HEI was of below average quality in 31.0% of women at baseline. This decreased from week 28 (P<0.001) and was maintained at a lower level post-partum such that HEI levels were lower compared with study entry (53.3±12.7 versus 56.7±10.1, P<0.001). The HEI decrease occurred in association with decreases in the milk, meat and unsaturated oil components, and increases in the proportion of energy from solid fats, alcohol and added sugars (P<0.001), and was independently predicted by the socioeconomic index for areas score (β=−0.011, s.e.=0.011, P=0.031). CONCLUSION: We report for the first time that dietary quality decreases across pregnancy and is maintained at this reduced level in the early post-partum period in overweight and obese women. Dietary interventions aimed at improving diet quality should be targeted to early pregnancy and post-partum.L.J. Moran, Z. Sui, C.S. Cramp and J.M. Dod

Population change in breeding boreal waterbirds in a 25-year perspective : What characterises winners and losers?

Understanding drivers of variation and trends in biodiversity change is a general scientific challenge, but also crucial for conservation and management. Previous research shows that patterns of increase and decrease are not always consistent at different spatial scales, calling for approaches combining the latter. We here explore the idea that functional traits of species may help explaining divergent population trends. Complementing a previous community level study, we here analyse data about breeding waterbirds on 58 wetlands in boreal Fennoscandia, covering gradients in latitude as well as trophic status. We used linear mixed models to address how change in local abundance over 25 years in 25 waterbird species are associated with life history traits, diet, distribution, breeding phenology, and habitat affinity. Mean abundance increased in 10 species from 1990/1991 to 2016, whereas it decreased in 15 species. Local population increases were associated with species that are early breeders and have small clutches, an affinity for luxurious wetlands, an herbivorous diet, and a wide breeding range rather than a southern distribution. Local decreases, by contrast, were associated with species having large clutches and invertivorous diet, as well as being late breeders and less confined to luxurious wetlands. The three species occurring on the highest number of wetlands all decreased in mean abundance. The fact that early breeders have done better than late fits well with previous research about adaptability to climate change, that is, response to earlier springs. We found only limited support for the idea that life history traits are good predictors of wetland level population change. Instead, diet turned out to be a strong candidate for an important driver of population change, as supported by a general decrease of invertivores and a concomitant increase of large herbivores. In a wider perspective, future research needs to address whether population growth of large-bodied aquatic herbivores affects abundance of co-occurring invertivorous species, and if so, if this is due to habitat alteration, or to interference or exploitative competition.Peer reviewe

Temperature and UV-B-insensitive performance in tadpoles of the ornate burrowing frog: an ephemeral pond specialist

Animals may overcome the challenges of temperature instability through behavioural and physiological mechanisms in response to short-and long-term temperature changes. When ectotherms face the challenge of large diel temperature fluctuations, one strategy may be to reduce the thermal sensitivity of key traits in order to maintain performance across the range of temperatures experienced. Additional stressors may limit the ability of animals to respond to these thermally challenging environments through changes to energy partitioning or interactive effects. Ornate burrowing frog (Platyplectrum ornatum) tadpoles develop in shallow ephemeral pools that experience high diel thermal variability (> 20 degrees C) and can be exposed to high levels of UV-B radiation. Here, we investigated how development in fluctuating versus stable temperature conditions in the presence of high or low UV-B radiation influences thermal tolerance and thermal sensitivity of performance traits of P. ornatum tadpoles. Tadpoles developed in either stable (24 C) or fluctuating temperatures (18-32 degrees C) under high or low UV-B conditions. Tadpoles were tested for upper critical thermal limits, thermal dependence of resting metabolic rate and maximum burst swimming performance. We hypothesised that developmental responses to thermal fluctuations would increase thermal tolerance and reduce thermal dependence of physiological traits, and that trade-offs in the allocation of metabolic resources towards repairing UV-B-induced damage may limit the ability to maintain performance over the full range of temperatures experienced. We found that P. ornatum tadpoles were thermally insensitive for both burst swimming performance, across the range of temperatures tested, and resting metabolic rate at high temperatures independent of developmental conditions. Maintenance of performance led to a trade-off for growth under fluctuating temperatures and UV-B exposure. Temperature treatment and UV-B exposure had an interactive effect on upper critical thermal limits possibly due to the upregulation of the cellular stress response. Thermal independence of key traits may allow P. ornatum tadpoles to maintain performance in the thermal variability inherent in their environment