Tuning branching in ceria nanocrystals

Branched nanocrystals (NCs) enable high atomic surface exposure within a crystalline network that provides avenues for charge transport. This combination of properties makes branched NCs particularly suitable for a range of applications where both interaction with the media and charge transport are involved. Herein we report on the colloidal synthesis of branched ceria NCs by means of a ligand-mediated overgrowth mechanism. In particular, the differential coverage of oleic acid as an X-type ligand at ceria facets with different atomic density, atomic coordination deficiency, and oxygen vacancy density resulted in a preferential growth in the [111] direction and thus in the formation of ceria octapods. Alcohols, through an esterification alcoholysis reaction, promoted faster growth rates that translated into nanostructures with higher geometrical complexity, increasing the branch aspect ratio and triggering the formation of side branches. On the other hand, the presence of water resulted in a significant reduction of the growth rate, decreasing the reaction yield and eliminating side branching, which we associate to a blocking of the surface reaction sites or a displacement of the alcoholysis reaction. Overall, adjusting the amounts of each chemical, well-defined branched ceria NCs with tuned number, thickness, and length of branches and with overall size ranging from 5 to 45 nm could be produced. We further demonstrate that such branched ceria NCs are able to provide higher surface areas and related oxygen storage capacities (OSC) than quasi-spherical NCs

Evaluación de la calidad acústica de un aula problemática en la Universidad Politécnica de Cartagena

[ESP] El presente artículo tiene como objetivo la evaluación de diferentes parámetros acústicosde un aula. Se establece un protocolo para la medición acústica. Los parámetros estudiados son: el ruido de fondo, el tiempo de reverberación y la inteligibilidad de la palabra. Tras la caracterización de la sala y el análisis de los resultados, se ponen de manifiesto los diferentes problemas acústicos que impiden realizar cómodamente la actividad docente. [ENG] In this article different acoustic parameters of a classroom are evaluated, establishing a protocol for acoustic measurement. The parameters studied are: background noise, reverberation time and speech intelligibility. After the characterization of the room and the analysis of the results, we can appreciate the different acoustic problems that prevent comfortably teaching perform.Escuela Técnica Superior de Ingeniería de Telecomunicación (ETSIT), Escuela Técnica Superior de Ingeniería Agronómica (ETSIA), Escuela Técnica Superior de Ingeniería Industrial (ETSII), Escuela Técnica Superior de Arquitectura y Edificación (ETSAE), Escuela Técnica Superior de Ingeniería de Caminos, Canales y Puertos y de Ingeniería de Minas (ETSICCPIM), Facultad de Ciencias de la Empresa (FCCE), Parque Tecnológico de Fuente Álamo (PTFA), Vicerrectorado de Estudiantes y Extensión de la UPCT, Vicerrectorado de Investigación e Innovación de la UPCT, y Vicerrectorado de Internacionalización y Cooperación al Desarrollo de la UPCT

XTEND: Extending the depth of field in cryo soft X-ray tomography

We have developed a new data collection method and processing framework in full field cryo soft X-ray tomography to computationally extend the depth of field (DOF) of a Fresnel zone plate lens. Structural features of 3D-reconstructed eukaryotic cells that are affected by DOF artifacts in standard reconstruction are now recovered. This approach, based on focal series projections, is easily applicable with closed expressions to select specific data acquisition parameters.This work was partially supported by MINECO grants BFU2014-54181 to JLC and AIC-A-2011-0638, BIO2013-44647-R and BIO2016-76400-R to JMC, Madrid. Regional government grants S2013/MIT-2850 to JLC and S2010/BMD-2305 to JMC, National Science Foundation grant DMS-1114901 to GTH, the European Union through BioStruct-X Project 283570 and Horizon 2020 through grant iNEXT (INFRAIA-1-2014-2015, Proposal: 653706).S

Multiphoton imaging of melanoma 3D models with plasmonic nanocapsules

We report the synthesis of plasmonic nanocapsules and the cellular responses they induce in 3D melanoma models for their perspective use as a photothermal therapeutic agent. The wall of the nanocapsules is composed of polyelectrolytes. The inner part is functionalized with discrete gold nanoislands. The cavity of the nanocapsules contains a fluorescent payload to show their ability for loading a cargo. The nanocapsules exhibit simultaneous two-photon luminescent, fluorescent properties and X-ray contrasting ability. The average fluorescence lifetime (τ) of the nanocapsules measured with FLIM (0.3 ns) is maintained regardless of the intracellular environment, thus proving their abilities for bioimaging of models such as 3D spheroids with a complex architecture. Their multimodal imaging properties are exploited for the first time to study tumorspheres cellular responses exposed to the nanocapsules. Specifically, we studied cellular uptake, toxicity, intracellular fate, generation of reactive oxygen species, and effect on the levels of hypoxia by using multi-photon and confocal laser scanning microscopy. Because of the high X-ray attenuation and atomic number of the gold nanostructure, we imaged the nanocapsule-cell interactions without processing the sample. We confirmed maintenance of the nanocapsules’ geometry in the intracellular milieu with no impairment of the cellular ultrastructure. Furthermore, we observed the lack of cellular toxicity and no alteration in oxygen or reactive oxygen species levels. These results in 3D melanoma models contribute to the development of these nanocapsules for their exploitation in future applications as agents for imaging-guided photothermal therapy. Statement of Significance: The novelty of the work is that our plasmonic nanocapsules are multimodal. They are responsive to X-ray and to multiphoton and single-photon excitation. This allowed us to study their interaction with 2D and 3D cellular structures and specifically to obtain information on tumor cell parameters such as hypoxia, reactive oxygen species, and toxicity. These nanocapsules will be further validated as imaging-guided photothermal probe

High-throughput functional annotation and data mining with the Blast2GO suite

Functional genomics technologies have been widely adopted in the biological research of both model and non-model species. An efficient functional annotation of DNA or protein sequences is a major requirement for the successful application of these approaches as functional information on gene products is often the key to the interpretation of experimental results. Therefore, there is an increasing need for bioinformatics resources which are able to cope with large amount of sequence data, produce valuable annotation results and are easily accessible to laboratories where functional genomics projects are being undertaken. We present the Blast2GO suite as an integrated and biologist-oriented solution for the high-throughput and automatic functional annotation of DNA or protein sequences based on the Gene Ontology vocabulary. The most outstanding Blast2GO features are: (i) the combination of various annotation strategies and tools controlling type and intensity of annotation, (ii) the numerous graphical features such as the interactive GO-graph visualization for gene-set function profiling or descriptive charts, (iii) the general sequence management features and (iv) high-throughput capabilities. We used the Blast2GO framework to carry out a detailed analysis of annotation behaviour through homology transfer and its impact in functional genomics research. Our aim is to offer biologists useful information to take into account when addressing the task of functionally characterizing their sequence data

Cunning defects: Emission control by structural point defects on Cu(i)I double chain coordination polymers

The following version is an accepted manuscript in Journal of Materials Chemistry C 8.4 (2020): 1448-1458 and may be found at ttps://doi.org/10.1039/C9TC05185FThe direct reaction between CuI and 3,5-dichloropyridine, in acetonitrile at room temperature, gives rise to [Cu(Cl2-py)I]n (Cl2-py = 3,5-dichloropyridine), which consists of a Cu(i)-I double chain based coordination polymer (CP) grafted with 3,5-dichloropyridine. In this simple one-pot process, the modulation of the reaction conditions, i.e. slight variations in the CuI and Cl2-py ratio caused by in situ disproportion, can, however, produce significant changes in the physical properties of the materials. For instance, the reaction carried out in a 1 : 1 ratio under ambient conditions leads to compound 1, while compound 1′ is obtained upon a solvothermal process of stoichiometric reaction mixture, Cl2-py and CuI, which produces partial disproportion (<0.5% in weight) of the initial Cu(i). Interestingly, compounds 1 and 1′ show an identical chemical composition and structure as determined by both single crystal and powder X-ray diffraction. However, they display remarkable differences in the luminescence behavior, featuring broad emission bands centered at 515 and 670 nm and associated to photoluminescence quantum yields of 12 and 5% for 1 and 1′, respectively. Density functional theory (DFT) calculations allowed us to rationalize the nature of this rare behavior. This is attributed to structural defects related to the weaker coordination bond present in these structures that provoke the strong red-shifted emissionThe authors thank financial support from the Spanish Ministerio de Economıa y Competitividad (MAT2016-77608-C3-1-P, MAT2016-75883-C2-2-P, MAT2010-20843-C02-01, CTQ2016-75816- C2-1P, MAT2016-75586-C4-4-P) and by EU-FEDER funds. JGP thanks to Servicios Generales de Apoyo a la Investigacion (SEGAI) at La Laguna University. J. I. M. acknowledges the financial support by the ‘‘Ramo´n y Cajal’’ Program of MINECO (Grant RYC-2015- 17730) and the EU via the ERC-Synergy Program (Grant ERC-2013- SYG-610256 NANOCOSMOS). J. C. E. acknowledges the financialsupport by the ‘‘FPI-MINECO’’ Program of MINECO (Grant BES2015-071534). R. D. C. acknowledges the program ‘‘Ayudas para la atraccio´n de talento investigador—Modalidad 1 of the Consejerı´a de Educacio´n, Juventud y Deporte—Comunidad de Madrid with the Reference No. 2016-T1/IND-1463.’’, Spanish MINECO for the Ramo´n y Cajal program (RYC-2016-20891), the Europa Excelencia program (ERC2019-092825), and HYNANOSC (RTI2018-099504-A-C22). R. D. C. also acknowledges the 2018 Leonardo Grant for Researchers and Cultural Creators from BBVA Foundation and the FOTOART-CM project funded by Madrid region under programm P2018/NMT-4367. J. F.-C. acknowledges the Marie Skłodowska-Curie Individual Fellowships (H2020-MSCA-IF-2017). This paper is dedicated to Dmitri Mendele´yev in honour of the 150th anniversary of the discovery of the periodic tabl

Social and environmental aspects of the energy transition

The need to promote a swift, efficient and fair energy transition to clean, secure and efficient energy production, storage, transport, and consumption is a major challenge for the future of the planet ( EC 2020 ). Currently, massive emissions of greenhouse gases ( particularly CO2 ) and other pollutants are changing global climate, and the lasts report of the Intergovernmental Panel on Climate Change ( IPCC 2018 ) advised that keeping the temperature increase below 1.5 ºC will require drastic, urgent and internationally coordinated actions. These initiatives will greatly affect advanced economies, characterized by high energy consumption, which should seek for clean and secure local energy sources, but they are also highly relevant for quickly developing countries, whose biodiversity, natural resources and standards of living are at risks due to over exploitation of local resources or to accumulation of waste products of energy production technologies coming from elsewhere. These processes of transition, though, have generated a variety of social and environmental impacts and, at the same time, have triggered complex questions about sustainability and social acceptance ( i.e. Sánchez-Zapata et al. 2019 for wind and solar energy production in Spain ). Social and environmental aspects of the transition to clean, secure and efficient energy production, storage, transport, and consumption should then be fully incorporated into research on new energy sources to ensure its sustainability.Peer reviewe

Changes in the content of chlorophylls and carotenoids in the rind of Fino 49 lemons during maturation and their relationship with parameters from the CIELAB color space

In the present work, the coordinates L*, a* and b* from the CIELAB color space, as well as the chlorophyll, total carotenoids and the content of the carotenoids Lutein and β-cryptoxanthin were measured in the skin of fruits from the Fino 49 lemon during its development, with the aim of understanding the relationship that exists between the color changes of the fruit’s skin (color coordinates) and the pigment content. Also, the understanding of the relative importance of the contents of lutein and β-cryptoxanthin with respect to the total content of carotenoids was sought. The period of study lasted three years; from September 2015 to January 2016, from September 2016 to January 2017, and from September 2017 to January 2018, the periods that comprised the color changes of the lemon fruit until its harvest. The fruits were measured every two weeks in the experimental plot of the IMIDA (Murcian Institute of Agricultural and Food Research and Development) located at La Alberca (Murcia, Spain) and in the experimental orchards from the CEBAS-CSIC, located in Santomera (Murcia). During he experiment, the color and chlorophyll, Lutein and β-cryptoxanthin concentrations were measured. The results showed that there was a good correlation between the color coordinates and the pigments responsible for the lemon’s skin color: all the color pigments were correlated with the a*, b* color coordinates and the Hue angle index. Throughout the fruit’s maturation, a degradation of the chlorophylls was observed, as well as an increase of β-cryptoxanthin, which is responsible for the green and yellow color of the fruits, respectively. Lutein, which was found in high concentrations, decreased with time, but did not contribute to the fruit’s color

Interplay between septins and ubiquitin-mediated xenophagy during Shigella entrapment

Septins are cytoskeletal proteins implicated in numerous cellular processes including cytokinesis and morphogenesis. In the case of infection by Shigella flexneri, septins assemble into cage-like structures that entrap cytosolic bacteria targeted by autophagy. The interplay between septin cage entrapment and bacterial autophagy is poorly understood. We used a correlative light and cryo-soft X-ray tomography (cryo-SXT) pipeline to study septin cage entrapment of Shigella in its near-native state. Septin cages could be identified as X-ray dense structures, indicating they contain host cell proteins and lipids consistent with their autophagy links. Airyscan confocal microscopy of Shigella-septin cages showed that septins and lysine 63 (K63)-linked ubiquitin chains are present in separate bacterial microdomains, suggesting they are recruited separately. Finally, Cryo-SXT and live-cell imaging revealed an interaction between septins and microtubule-associated protein light chain 3B (LC3B)-positive membranes during autophagy of Shigella. Collectively our data present a new model for how septin-caged Shigella are targeted to autophagy

Septins and K63 ubiquitin chains are present in separate bacterial microdomains during autophagy of entrapped Shigella

During host cell invasion, Shigella escapes to the cytosol and polymerizes actin for cell-to-cell spread. To restrict cell-to-cell spread, host cells employ cell-autonomous immune responses including antibacterial autophagy and septin cage entrapment. How septins interact with the autophagy process to target Shigella for destruction is poorly understood. Here, we employed a correlative light and cryo-soft X-ray tomography (cryo-SXT) pipeline to study Shigella septin cage entrapment in its near-native state. Quantitative cryo-SXT showed that Shigella fragments mitochondria and enabled visualization of X-ray-dense structures (∼30 nm resolution) surrounding Shigella entrapped in septin cages. Using Airyscan confocal microscopy, we observed lysine 63 (K63)-linked ubiquitin chains decorating septin-cage-entrapped Shigella. Remarkably, septins and K63 chains are present in separate bacterial microdomains, indicating they are recruited separately during antibacterial autophagy. Cryo-SXT and live-cell imaging revealed an interaction between septins and LC3B-positive membranes during autophagy of Shigella. Together, these findings demonstrate how septin-caged Shigella are targeted for autophagy and provide fundamental insights into autophagy-cytoskeleton interactions