Correlation of the Thanetian-Ilerdian turnover of larger foraminifera and the Paleocene-Eocene thermal maximum: confirming evidence from the Campo area (Pyrenees, Spain)

It has long been known that a major larger foraminifera turnover (LFT) occurred at the boundary between the Thanetian and Ilerdian stages, but its possible correlation with the Paleocene-Eocene thermal maximum (PETM) was unsuspected until the work of Baceta (1996), and has been controversial ever since. After summarizing the history of this controversy, we present information from three new sections that conclusively resolve the issue, all of them placed less than 2 km to the east of the classical Campo section in the southern Pyrenees. In these three sections, an up to 7 meter-thick intercalation of continental deposits rich in pedogenic carbonate nodules is sandwiched between uppermost Thanetian and lowermost Ilerdian shallow marine carbonates. The d13C composition of 42 pedogenic nodules collected from two of these sections (San Martín and La Cinglera) ranges between –11.4 and -14.3‰ and averages –12.9‰, values that conclusively represent the PETM and for the first time are recorded in sections where the LFT is clearly represented. Further, a high-resolution lithological correlation between Campo and the three new sections across the P-E interval unquestionably demonstrates that the lowermost marine beds with autochthonous specimens of Alveolina vredenburgi (a tell-tale of the LFT) are laterally interfingered –and are therefore coeval- with the nodule-bearing PETM continental deposits. On the basis of the new evidence, the temporal coincidence of the PETM and the LFT can no longer be doubted

Redefinition of the Ilerdian Stage (early Eocene)

The Ilerdian Stage was created by Hottinger and Schaub in 1960 to accommodate a significant phase in the evolution of larger foraminifera not recorded in the northern European basins, and has since been adopted by most researchers working on shallow marine early Paleogene deposits of the Tethys domain. One of the defining criteria of the stage is a major turnover of larger foraminifera, marked by the FO’s of Alveolina vredenburgi (formerly A. cucumiformis) and Nummulites fraasi. There is now conclusive evidence that this turnover was coeval with the onset of the Carbon Isotope Excursion (CIE) and, consequently, with the Paleocene-Eocene (P-E) boundary, a temporal correspondence that reinforces the usefulness of the Ilerdian as a chronostratigraphic subdivision of the early Eocene in a regional context. However, in addition to the paleontological criteria, the definition of the Ilerdian was also based on the designation of two reference sections in the southern Pyrenees: Tremp (stratotype) and Campo (parastratotype). In both sections, the base of the stage was placed at the lowest marine bed containing A. vredenburgi specimens. Using the CIE as a correlation tool we demonstrate that these two marine beds occur at different chronological levels, being older in Campo than in Tremp. Further, we show that both beds are in turn younger than the lowest strata with Ilerdian larger foraminifera at the deep-water Ermua section in the Basque Basin (western Pyrenees). Since the age of stage boundaries must be the same everywhere, the choice of these stratotype sections was misleading, since in practice it resulted in the Ilerdian being used as a facies term rather than as a chronostratigraphic unit. To eliminate that conflict, and yet be respectful with established tradition, we propose to redefine the Ilerdian Stage following a procedure similar to the one used by the International Commission on Stratigraphy to establish global chronostratigraphic standards, namely: by using a “silver spike” to be placed in the Tremp section at the base of the Claret Conglomerate, a widespread lithological unit that in the Tremp Graus Basin coincides with the onset of the CIE. The redefined regional Ilerdian Stage becomes thus directly correlatable to the lower part of the global Ypresian Stage, as currently defined by the International Commission on Stratigraphy

CIBERER : Spanish national network for research on rare diseases: A highly productive collaborative initiative

Altres ajuts: Instituto de Salud Carlos III (ISCIII); Ministerio de Ciencia e Innovación.CIBER (Center for Biomedical Network Research; Centro de Investigación Biomédica En Red) is a public national consortium created in 2006 under the umbrella of the Spanish National Institute of Health Carlos III (ISCIII). This innovative research structure comprises 11 different specific areas dedicated to the main public health priorities in the National Health System. CIBERER, the thematic area of CIBER focused on rare diseases (RDs) currently consists of 75 research groups belonging to universities, research centers, and hospitals of the entire country. CIBERER's mission is to be a center prioritizing and favoring collaboration and cooperation between biomedical and clinical research groups, with special emphasis on the aspects of genetic, molecular, biochemical, and cellular research of RDs. This research is the basis for providing new tools for the diagnosis and therapy of low-prevalence diseases, in line with the International Rare Diseases Research Consortium (IRDiRC) objectives, thus favoring translational research between the scientific environment of the laboratory and the clinical setting of health centers. In this article, we intend to review CIBERER's 15-year journey and summarize the main results obtained in terms of internationalization, scientific production, contributions toward the discovery of new therapies and novel genes associated to diseases, cooperation with patients' associations and many other topics related to RD research

RICORS2040 : The need for collaborative research in chronic kidney disease

Chronic kidney disease (CKD) is a silent and poorly known killer. The current concept of CKD is relatively young and uptake by the public, physicians and health authorities is not widespread. Physicians still confuse CKD with chronic kidney insufficiency or failure. For the wider public and health authorities, CKD evokes kidney replacement therapy (KRT). In Spain, the prevalence of KRT is 0.13%. Thus health authorities may consider CKD a non-issue: very few persons eventually need KRT and, for those in whom kidneys fail, the problem is 'solved' by dialysis or kidney transplantation. However, KRT is the tip of the iceberg in the burden of CKD. The main burden of CKD is accelerated ageing and premature death. The cut-off points for kidney function and kidney damage indexes that define CKD also mark an increased risk for all-cause premature death. CKD is the most prevalent risk factor for lethal coronavirus disease 2019 (COVID-19) and the factor that most increases the risk of death in COVID-19, after old age. Men and women undergoing KRT still have an annual mortality that is 10- to 100-fold higher than similar-age peers, and life expectancy is shortened by ~40 years for young persons on dialysis and by 15 years for young persons with a functioning kidney graft. CKD is expected to become the fifth greatest global cause of death by 2040 and the second greatest cause of death in Spain before the end of the century, a time when one in four Spaniards will have CKD. However, by 2022, CKD will become the only top-15 global predicted cause of death that is not supported by a dedicated well-funded Centres for Biomedical Research (CIBER) network structure in Spain. Realizing the underestimation of the CKD burden of disease by health authorities, the Decade of the Kidney initiative for 2020-2030 was launched by the American Association of Kidney Patients and the European Kidney Health Alliance. Leading Spanish kidney researchers grouped in the kidney collaborative research network Red de Investigación Renal have now applied for the Redes de Investigación Cooperativa Orientadas a Resultados en Salud (RICORS) call for collaborative research in Spain with the support of the Spanish Society of Nephrology, Federación Nacional de Asociaciones para la Lucha Contra las Enfermedades del Riñón and ONT: RICORS2040 aims to prevent the dire predictions for the global 2040 burden of CKD from becoming true

Robust estimation of bacterial cell count from optical density

Optical density (OD) is widely used to estimate the density of cells in liquid culture, but cannot be compared between instruments without a standardized calibration protocol and is challenging to relate to actual cell count. We address this with an interlaboratory study comparing three simple, low-cost, and highly accessible OD calibration protocols across 244 laboratories, applied to eight strains of constitutive GFP-expressing E. coli. Based on our results, we recommend calibrating OD to estimated cell count using serial dilution of silica microspheres, which produces highly precise calibration (95.5% of residuals <1.2-fold), is easily assessed for quality control, also assesses instrument effective linear range, and can be combined with fluorescence calibration to obtain units of Molecules of Equivalent Fluorescein (MEFL) per cell, allowing direct comparison and data fusion with flow cytometry measurements: in our study, fluorescence per cell measurements showed only a 1.07-fold mean difference between plate reader and flow cytometry data

Evaluation of appendicitis risk prediction models in adults with suspected appendicitis

Background Appendicitis is the most common general surgical emergency worldwide, but its diagnosis remains challenging. The aim of this study was to determine whether existing risk prediction models can reliably identify patients presenting to hospital in the UK with acute right iliac fossa (RIF) pain who are at low risk of appendicitis. Methods A systematic search was completed to identify all existing appendicitis risk prediction models. Models were validated using UK data from an international prospective cohort study that captured consecutive patients aged 16–45 years presenting to hospital with acute RIF in March to June 2017. The main outcome was best achievable model specificity (proportion of patients who did not have appendicitis correctly classified as low risk) whilst maintaining a failure rate below 5 per cent (proportion of patients identified as low risk who actually had appendicitis). Results Some 5345 patients across 154 UK hospitals were identified, of which two‐thirds (3613 of 5345, 67·6 per cent) were women. Women were more than twice as likely to undergo surgery with removal of a histologically normal appendix (272 of 964, 28·2 per cent) than men (120 of 993, 12·1 per cent) (relative risk 2·33, 95 per cent c.i. 1·92 to 2·84; P < 0·001). Of 15 validated risk prediction models, the Adult Appendicitis Score performed best (cut‐off score 8 or less, specificity 63·1 per cent, failure rate 3·7 per cent). The Appendicitis Inflammatory Response Score performed best for men (cut‐off score 2 or less, specificity 24·7 per cent, failure rate 2·4 per cent). Conclusion Women in the UK had a disproportionate risk of admission without surgical intervention and had high rates of normal appendicectomy. Risk prediction models to support shared decision‐making by identifying adults in the UK at low risk of appendicitis were identified

Search for spontaneous R-parity violation at s**(1/2) = 183-GeV and 189-GeV

Searches for spontaneous R-parity violating signals at sqrt(s) = 183 GeV and sqrt(s) = 189 GeV have been performed using the 1997 and 1998 DELPHI data, under the assumption of R-parity breaking in the third lepton family. The expected topology for the decay of a pair of charginos into two acoplanar taus plus missing energy was investigated and no evidence for a signal was found. The results were used to derive a limit on the chargino mass and to constrain the allowed domains of the MSSM parameter space.Comment: 18 pages, 6 figures, Accepted by Physics Letters