Isolation of a potential anticancer agent with protein phosphatase inhibitory activity from soil-derived Penicillium sp. strain H9318

Purpose: To determine the effect of the secondary metabolites from Penicillium sp. H9318 on cytotoxicity and cell cycle progression. Methods: A yeast PP1 inhibitory screening system was carried out to confirm the presence of anti-PP1c activity in crude acetone extracts of strain H9318. The extracts were fractionated and identified as Fraction S1 and Citrinin 9318 (CTN9318). Various cancer cell lines were used to test for the toxicity of the crude acetone extracts, Fraction S1 and Citrinin 9318, using MTT viability assay. Results: It was found that a colorectal cancer cell line, HT-29, was susceptible to Fraction S1 and Citrinin 9318. A propidium iodide (PI)-incorporated DNA assay was used to show that there was G2/M arrest in HT-29 by Citrinin 9318. Conclusion: Citrinin 9318 inhibits the viability of HT-29 via mitotic block. The results suggest that Citrinin 9318 is capable of exerting cytotoxicity and mitotic arrest in a colon cancer cell line, HT29

Defect cluster recognition system for fabricated semiconductor wafers

The International Technology Roadmap for Semiconductors (ITRS) identifies production test data as an essential element in improving design and technology in the manufacturing process feedback loop. One of the observations made from the high-volume production test data is that dies that fail due to a systematic failure have a tendency to form certain unique patterns that manifest as defect clusters at the wafer level. Identifying and categorising such clusters is a crucial step towards manufacturing yield improvement and implementation of real-time statistical process control. Addressing the semiconductor industry's needs, this research proposes an automatic defect cluster recognition system for semiconductor wafers that achieves up to 95% accuracy (depending on the product type)

Acceleration effects of microbial inoculum on palm oil mill organic waste composting.

ABSTRACT The acceleration effects of inoculum in composting of empty fruit bunches were investigated. Composting of empty fruit bunches fibres in two sizes, 4 cm and 2 cm length, were treated with microbial inoculum consisting of Agromonas, Aspergillus, Azotobacter, Bacillus, Celhdomonas, Chaetomium, Clostridium, Coprinus, Microbispora, Penicillium, Pseudomonas, Thermoactinomyces, Trichoderma and Trichurus in separate laboratory scale in-vessel of 30 liters volume. A control without inoculum with 4 cm length empty fruit bunches was also conducted in parallel. The compost piles were shift-turned weekly. Parameters such as moisture content, temperature, pH, and electrical conductivity were used to monitor the composting processes. The carbon-nitrogen ratio, UV-vis spectrophotometer test, and germination test were used to assess the maturity of compost. The results showed that the inoculum was effective in reducing the C/N ratio by 54% compared to control 46% and rapidly increasing the UV-vis absorption ratio in first three weeks. By using functional microbes, the composting of empty fruit bunches was reduced to 5 weeks compared to 9 weeks for those without inoculation. The acceleration effect was more prominent for the 2 cm length samples

Gravitational radiation from nonaxisymmetric spherical Couette flow in a neutron star

The gravitational wave signal generated by global, nonaxisymmetric shear flows in a neutron star is calculated numerically by integrating the incompressible Navier--Stokes equation in a spherical, differentially rotating shell. At Reynolds numbers \Rey \gsim 3 \times 10^{3}, the laminar Stokes flow is unstable and helical, oscillating Taylor--G\"ortler vortices develop. The gravitational wave strain generated by the resulting kinetic-energy fluctuations is computed in both $+$ and $\times$ polarizations as a function of time. It is found that the signal-to-noise ratio for a coherent, $10^{8}$-{\rm s} integration with LIGO II scales as $6.5 (\Omega_*/10^{4} {\rm rad} {\rm s}^{-1})^{7/2}$ for a star at 1 {\rm kpc} with angular velocity $\Omega_*$. This should be regarded as a lower limit: it excludes pressure fluctuations, herringbone flows, Stuart vortices, and fully developed turbulence (for \Rey \gsim 10^{6}).Comment: (1) School of Physics, University of Melbourne, Parkville, VIC 3010, Australia. (2) Departamento de Fisica, Escuela de Ciencias,Universidad de Oriente, Cumana, Venezuela, (3) Department of Mechanical Engineering, University of Melbourne, Parkville, VIC 3010, Australia. Accepted for publication in The Astrophysical Journal Letter

A quadtree-polygon-based scaled boundary finite element method for image-based mesoscale fracture modelling in concrete

A quadtree-polygon scaled boundary finite element-based approach for image-based modelling of concrete fracture at the mesoscale is developed. Digital images representing the two-phase mesostructure of concrete, which comprises of coarse aggregates and mortar are either generated using a take-and-place algorithm with a user-defined aggregate volume ratio or obtained from X-ray computed tomography as an input. The digital images are automatically discretised for analysis by applying a balanced quadtree decomposition in combination with a smoothing operation. The scaled boundary finite element method is applied to model the constituents in the concrete mesostructure. A quadtree formulation within the framework of the scaled boundary finite element method is advantageous in that the displacement compatibility between the cells are automatically preserved even in the presence of hanging nodes. Moreover, the geometric flexibility of the scaled boundary finite element method facilitates the use of arbitrary sided polygons, allowing better representation of the aggregate boundaries. The computational burden is significantly reduced as there are only finite number of cell types in a balanced quadtree mesh. The cells in the mesh are connected to each other using cohesive interface elements with appropriate softening laws to model the fracture of the mesostructure. Parametric studies are carried out on concrete specimens subjected to uniaxial tension to investigate the effects of various parameters e.g. aggregate size distribution, porosity and aggregate volume ratio on the fracture of concrete at the meso-scale. Mesoscale fracture of concrete specimens obtained from X-ray computed tomography scans are carried out to demonstrate its feasibility

Transcriptional profiles of Burkholderia pseudomallei reveal the direct and indirect roles of Sigma E under oxidative stress conditions

This is the final version of the article. Available from BioMed Central via the DOI in this record.BACKGROUND: Burkholderia pseudomallei, the causative agent of melioidosis, is a Gram-negative bacterium widely distributed in soil and water in endemic areas. This soil saprophyte can survive harsh environmental conditions, even in soils where herbicides (containing superoxide generators) are abundant. Sigma factor E (σE) is a key regulator of extra-cytoplasmic stress response in Gram-negative bacteria. In this study, we identified the B. pseudomallei σE regulon and characterized the indirect role that σE plays in the regulation of spermidine, contributing to the successful survival of B. pseudomallei in stressful environments. RESULTS: Changes in the global transcriptional profiles of B. pseudomallei wild type and σE mutant under physiological and oxidative stress (hydrogen peroxide) conditions were determined. We identified 307 up-regulated genes under oxidative stress condition. Comparison of the transcriptional profiles of B. pseudomallei wild type and σE mutant under control or oxidative stress conditions identified 85 oxidative-responsive genes regulated by σE, including genes involved in cell membrane repair, maintenance of protein folding and oxidative stress response and potential virulence factors such as a type VI secretion system (T6SS). Importantly, we identified that the speG gene, encoding spermidine-acetyltransferase, is a novel member of the B. pseudomallei σE regulon. The expression of speG was regulated by σE, implying that σE plays an indirect role in the regulation of physiological level of spermidine to protect the bacteria during oxidative stress. CONCLUSION: This study identified B. pseudomallei genes directly regulated by σE in response to oxidative stress and revealed the indirect role of σE in the regulation of the polyamine spermidine (via regulation of speG) for bacterial cell protection during oxidative stress. This study provides new insights into the regulatory mechanisms by which σE contributes to the survival of B. pseudomallei under stressful conditions.This work was supported by the National Science and Technology Development Agency and Siriraj Grant for Research and Development. S. Jitprasutwit was supported by the Royal Golden Jubilee Ph. D. Program (PHD0270/2551)

Correlation Between Polymer Packing And Gas Transport Properties For Co2/N2 Separation In Glassy Fluorinated Polyimide Membrane

Gas separation performance of a membrane highly hinges on its physical properties. In this study, the interplay between polymer packing of a membrane and its gas transport behaviours (permeability and selectivity) was investigated through a series of 6FDA-DAM:DABA (3:2) polyimide membranes with different polymer compactness. The chemical structure and the polymer packing of the resulting membrane were characterized using attenuated total reflectance-Fourier transform infrared spectroscopy (ATR-FTIR) and packing density measurement, respectively. CO2/N2 separation efficiency of the membrane was evaluated at 25oC with feed pressure up to 6 bar. N2 permeability was found to rely on the membrane’s packing density, which signified its greater dependence on molecular sieving. In contrast, sorption showed a more vital role in determining the CO2 permeability. In this work, the membrane with a final thickness of 97±2 μm had successfully surpassed the Robeson’s 2008 upper bound plot with a CO2 permeability of 83 Barrer and CO2/N2 selectivity of 97 at 3 bar permeation

Evidence for Surface Andreev Bound states in Cuprate Superconductors from Penetration Depth Measurements

Tunneling and theoretical studies have suggested that Andreev bound states form at certain surfaces of unconventional superconductors. Through studies of the temperature and field dependence of the in-plane magnetic penetration depth lambda_ab at low temperature, we have found strong evidence for the presence of these states in clean single crystal YBCO and BSCCO. Crystals cut to expose a [110] interface show a strong upturn in lambda_ab at around 7K, when the field is oriented so that the supercurrents flow around this surface. In YBCO this upturn is completely suppressed by a field of ~0.1 T.Comment: 4 pages 2 column revtex + 4 postscript figures. Submitted to PR