The silicon stable isotope distribution along the GEOVIDE section (GEOTRACES GA-01) of the North Atlantic Ocean

The stable isotope composition of dissolved silicon in seawater (δ30SiDSi) was examined at 10 stations along the GEOVIDE section (GEOTRACES GA-01), spanning the North Atlantic Ocean (40–60∘ N) and Labrador Sea. Variations in δ30SiDSi below 500 m were closely tied to the distribution of water masses. Higher δ30SiDSi values are associated with intermediate and deep water masses of northern Atlantic or Arctic Ocean origin, whilst lower δ30SiDSi values are associated with DSi-rich waters sourced ultimately from the Southern Ocean. Correspondingly, the lowest δ30SiDSi values were observed in the deep and abyssal eastern North Atlantic, where dense southern-sourced waters dominate. The extent to which the spreading of water masses influences the δ30SiDSi distribution is marked clearly by Labrador Sea Water (LSW), whose high δ30SiDSi signature is visible not only within its region of formation within the Labrador and Irminger seas, but also throughout the mid-depth western and eastern North Atlantic Ocean. Both δ30SiDSi and hydrographic parameters document the circulation of LSW into the eastern North Atlantic, where it overlies southern-sourced Lower Deep Water. The GEOVIDE δ30SiDSi distribution thus provides a clear view of the direct interaction between subpolar/polar water masses of northern and southern origin, and allow examination of the extent to which these far-field signals influence the local δ30SiDSi distribution

Domain size heterogeneity in the Ising model: geometrical and thermal transitions

A measure of cluster size heterogeneity ($H$), introduced by Lee et al [Phys. Rev. E {\bf 84}, 020101 (2011)] in the context of explosive percolation, was recently applied to random percolation and to domains of parallel spins in the Ising and Potts models. It is defined as the average number of different domain sizes in a given configuration and a new exponent was introduced to explain its scaling with the size of the system. In thermal spin models, however, physical clusters take into account the temperature-dependent correlation between neighboring spins and encode the critical properties of the phase transition. We here extend the measure of $H$ to these clusters and, moreover, present new results for the geometric domains for both $d=2$ and 3. We show that the heterogeneity associated with geometric domains has a previously unnoticed double peak, thus being able to detect both the thermal and percolative transition. An alternative interpretation for the scaling of $H$ that does not introduce a new exponent is also proposed.Comment: 7 pages, 4 figure

Solubility of iron in the Southern Ocean

Iron solubility (cFeS) ranged from 0.4 to 1.5 nmol L−1, decreasing from south to north in three different Southern Ocean zones (the Coastal Zone, the Antarctic Zone, and the Polar Frontal Zone plus the Subantarctic Zone). This decrease was at times correlated with an increase in temperature. Organic Fe solubility (cFeS,org), which was obtained by subtracting from total measured Fe solubility the solubility of inorganic species of iron (Fe) at the measurement temperature (20°C), ranged from 0.3 to 1.3 nmol L−1, representing an average of 32 ± 14% of the concentration of ligands in the dissolved size fraction as determined via competitive ligand exchange–absorptive cathodic stripping voltammetry (barring a handful of extremely high values from a transect run to the east of Prydz Bay). Values of cFeS were mainly lower than the predicted value for inorganic Fe solubility at the in situ temperature. Total in situ Fe solubility (cFeS,adj) was therefore estimated by adjusting for inorganic Fe solubility at in situ temperatures (between −2°C and +18°C). Because in situ temperatures in the Antarctic Circumpolar Current were mostly lower than +3°C, such cFeS,adj values, ranging from 0.5 to 1.8 nmol L−1, were roughly twice as large as cFeS,org. The adjustment relies heavily on model calculations of inorganic Fe solubility but, if correct, indicates that the bulk of the solubility of Fe in the cold waters of the Southern Ocean is tied to the solubility of inorganic Fe rather than to Fe ligands in the soluble size fraction

Critical Theory and the Loneliness of the Tax Prof

This essay, prepared for a symposium on critical theory and tax law, has two goals: to suggest why feminist theory and critical race theory are spreading in taxation and to discuss some dangers of that criticism. The author evaluates three examples of the new criticism: an article on critical race theory by Professors Moran and Whitford; an article on feminist statutory interpretation by Professor Handelman; and a book, Taxing Women, by Professor McCaffery

Response of Spiking Neurons to Correlated Inputs

The effect of a temporally correlated afferent current on the firing rate of a leaky integrate-and-fire (LIF) neuron is studied. This current is characterized in terms of rates, auto and cross-correlations, and correlation time scale $\tau_c$ of excitatory and inhibitory inputs. The output rate $\nu_{out}$ is calculated in the Fokker-Planck (FP) formalism in the limit of both small and large $\tau_c$ compared to the membrane time constant $\tau$ of the neuron. By simulations we check the analytical results, provide an interpolation valid for all $\tau_c$ and study the neuron's response to rapid changes in the correlation magnitude.Comment: 4 pages, 3 figure

iTRAQ Quantitative Proteomic Analysis of Vitreous from Patients with Retinal Detachment

Rhegmatogenous retinal detachment (RRD) is a potentially blinding condition characterized by a physical separation between neurosensory retina and retinal pigment epithelium. Quantitative proteomics can help to understand the changes that occur at the cellular level during RRD, providing additional information about the molecular mechanisms underlying its pathogenesis. In the present study, iTRAQ labeling was combined with two-dimensional LC-ESI-MS/MS to find expression changes in the proteome of vitreous from patients with RRD when compared to control samples. A total of 150 proteins were found differentially expressed in the vitreous of patients with RRD, including 96 overexpressed and 54 underexpressed. Several overexpressed proteins, several such as glycolytic enzymes (fructose-bisphosphate aldolase A, gamma-enolase, and phosphoglycerate kinase 1), glucose transporters (GLUT-1), growth factors (metalloproteinase inhibitor 1), and serine protease inhibitors (plasminogen activator inhibitor 1) are regulated by HIF-1, which suggests that HIF-1 signaling pathway can be triggered in response to RRD. Also, the accumulation of photoreceptor proteins, including phosducin, rhodopsin, and s-arrestin, and vimentin in vitreous may indicate that photoreceptor degeneration occurs in RRD. Also, the accumulation of photoreceptor proteins, including phosducin, rhodopsin, and s-arrestin, and vimentin in vitreous may indicate that photoreceptor degeneration occurs in RRD. Nevertheless, the differentially expressed proteins found in this study suggest that different mechanisms are activated after RRD to promote the survival of retinal cells through complex cellular responses.CENTRO-07-ST24-FEDER-002014; POCI-01-0145-FEDER-007491; CNB-CSIC proteomics lab is a member of ProteoRed, supported by PRB2-ISCIII grant [PT13/0001]; Novartis Farma-Produtos Farmacêuticos; PhD fellowship of Sciences Faculty financed by ICI and Santander.info:eu-repo/semantics/publishedVersio

Key components of the eight classes of type IV secretion systems involved in bacterial conjugation or protein secretion

Conjugation of DNA through a type IV secretion system (T4SS) drives horizontal gene transfer. Yet little is known on the diversity of these nanomachines. We previously found that T4SS can be divided in eight classes based on the phylogeny of the only ubiquitous protein of T4SS (VirB4). Here, we use an ab initio approach to identify protein families systematically and specifically associated with VirB4 in each class. We built profiles for these proteins and used them to scan 2262 genomes for the presence of T4SS. Our analysis led to the identification of thousands of occurrences of 116 protein families for a total of 1623 T4SS. Importantly, we could identify almost always in our profiles the essential genes of well-studied T4SS. This allowed us to build a database with the largest number of T4SS described to date. Using profile-profile alignments, we reveal many new cases of homology between components of distant classes of T4SS. We mapped these similarities on the T4SS phylogenetic tree and thus obtained the patterns of acquisition and loss of these protein families in the history of T4SS. The identification of the key VirB4-associated proteins paves the way toward experimental analysis of poorly characterized T4SS classes.Funding. Spanish Ministry of Economy [BFU2011-26608]; European Seventh Framework Program [282004/FP7-HEALTH.2011, 612146/FP7-ICT-2013]; European Research Council Grant [EVOMOBILOME no. 281605]. Source of open access funding: European Research Council grant to the PI

Optimum quantum dot size for highly efficient fluorescence bioimaging

Semiconductor quantum dots of few nanometers have demonstrated a great potential for bioimaging. The size determines the emitted color, but it is also expected to play an important role in the image brightness. In this work, the size dependence of the fluorescence quantum yield of the highly thermal sensitive CdTe quantum dots has been systematically investigated by thermal lens spectroscopy. It has been found that an optimum quantum yield is reached for 3.8-nm quantum dots. The presence of this optimum size has been corroborated in both one-photon excited fluorescence experiments and two-photon fluorescence microscopy of dot-incubated cancer cells. Combination of quantum yield and fluorescence decay time measurements supports that the existence of this optimum size emerges from the interplay between the frequency-dependent radiative emission rate and the size-dependent coupling strength between bulk excitons and surface trapping states