Visual neglect in posterior cortical atrophy

In posterior cortical atrophy (PCA), there is a progressive impairment of high-level visual functions and parietal damage, which might predict the occurrence of visual neglect. However, neglect may pass undetected if not assessed with specific tests, and might therefore be underestimated in PCA. In this prospective study, we aimed at establishing the side, the frequency and the severity of visual neglect, visual extinction, and primary visual field defects in an unselected sample of PCA patients

Development of a fixed module repertoire for the analysis and interpretation of blood transcriptome data.

As the capacity for generating large-scale molecular profiling data continues to grow, the ability to extract meaningful biological knowledge from it remains a limitation. Here, we describe the development of a new fixed repertoire of transcriptional modules, BloodGen3, that is designed to serve as a stable reusable framework for the analysis and interpretation of blood transcriptome data. The construction of this repertoire is based on co-clustering patterns observed across sixteen immunological and physiological states encompassing 985 blood transcriptome profiles. Interpretation is supported by customized resources, including module-level analysis workflows, fingerprint grid plot visualizations, interactive web applications and an extensive annotation framework comprising functional profiling reports and reference transcriptional profiles. Taken together, this well-characterized and well-supported transcriptional module repertoire can be employed for the interpretation and benchmarking of blood transcriptome profiles within and across patient cohorts. Blood transcriptome fingerprints for the 16 reference cohorts can be accessed interactively via: https://drinchai.shinyapps.io/BloodGen3Module/

PDRs4All III: JWST's NIR spectroscopic view of the Orion Bar

(Abridged) We investigate the impact of radiative feedback from massive stars on their natal cloud and focus on the transition from the HII region to the atomic PDR (crossing the ionisation front (IF)), and the subsequent transition to the molecular PDR (crossing the dissociation front (DF)). We use high-resolution near-IR integral field spectroscopic data from NIRSpec on JWST to observe the Orion Bar PDR as part of the PDRs4All JWST Early Release Science Program. The NIRSpec data reveal a forest of lines including, but not limited to, HeI, HI, and CI recombination lines, ionic lines, OI and NI fluorescence lines, Aromatic Infrared Bands (AIBs including aromatic CH, aliphatic CH, and their CD counterparts), CO2 ice, pure rotational and ro-vibrational lines from H2, and ro-vibrational lines HD, CO, and CH+, most of them detected for the first time towards a PDR. Their spatial distribution resolves the H and He ionisation structure in the Huygens region, gives insight into the geometry of the Bar, and confirms the large-scale stratification of PDRs. We observe numerous smaller scale structures whose typical size decreases with distance from Ori C and IR lines from CI, if solely arising from radiative recombination and cascade, reveal very high gas temperatures consistent with the hot irradiated surface of small-scale dense clumps deep inside the PDR. The H2 lines reveal multiple, prominent filaments which exhibit different characteristics. This leaves the impression of a "terraced" transition from the predominantly atomic surface region to the CO-rich molecular zone deeper in. This study showcases the discovery space created by JWST to further our understanding of the impact radiation from young stars has on their natal molecular cloud and proto-planetary disk, which touches on star- and planet formation as well as galaxy evolution.Comment: 52 pages, 30 figures, submitted to A&

An Interferometry Imaging Beauty Contest

We present a formal comparison of the performance of algorithms used for synthesis imaging with optical/infrared long-baseline interferometers. Six different algorithms are evaluated based on their performance with simulated test data. Each set of test data is formated in the interferometry Data Exchange Standard and is designed to simulate a specific problem relevant to long-baseline imaging. The data are calibrated power spectra and bispectra measured with a ctitious array, intended to be typical of existing imaging interferometers. The strengths and limitations of each algorithm are discussed

The SUBGLACIOR drilling probe: Concept and design

In response to the 'oldest ice' challenge initiated by the International Partnerships in Ice Core Sciences (IPICS), new rapid-access drilling technologies through glacier ice need to be developed. These will provide the information needed to qualify potential sites on the Antarctic ice sheet where the deepest section could include ice that is >1 Ma old and still in good stratigraphic order. Identifying a suitable site will be a prerequisite for deploying a multi-year deep ice-core drilling operation to elucidate the cause and mechanisms of the mid-Pleistocene transition from 40 ka glacial-interglacial cycles to 100 ka cycles. As part of the ICE&LASERS/SUBGLACIOR projects, we have designed an innovative probe, SUBGLACIOR, with the aim of perforating the ice sheet down to the bedrock in a single season and continuously measuring in situ the isotopic composition of the melted water and the methane concentration in trapped gases. Here we present the general concept of the probe, as well as the various technological solutions that we have favored so far to reach this goal. © 2014, International Glaciology Society. All rights reserved

Sugarcane transcriptome analysis in response to infection caused by <i>Acidovorax avenae</i> subsp. <i>avenae</i>

<div><p>Sugarcane is an important tropical crop mainly cultivated to produce ethanol and sugar. Crop productivity is negatively affected by <i>Acidovorax avenae</i> subsp <i>avenae</i> (<i>Aaa</i>), which causes the red stripe disease. Little is known about the molecular mechanisms triggered in response to the infection. We have investigated the molecular mechanism activated in sugarcane using a RNA-seq approach. We have produced a <i>de novo</i> transcriptome assembly (TR7) from sugarcane RNA-seq libraries submitted to drought and infection with <i>Aaa</i>. Together, these libraries present 247 million of raw reads and resulted in 168,767 reference transcripts. Mapping in TR7 of reads obtained from infected libraries, revealed 798 differentially expressed transcripts, of which 723 were annotated, corresponding to 467 genes. GO and KEGG enrichment analysis showed that several metabolic pathways, such as code for proteins response to stress, metabolism of carbohydrates, processes of transcription and translation of proteins, amino acid metabolism and biosynthesis of secondary metabolites were significantly regulated in sugarcane. Differential analysis revealed that genes in the biosynthetic pathways of ET and JA PRRs, oxidative burst genes, NBS-LRR genes, cell wall fortification genes, SAR induced genes and pathogenesis-related genes (PR) were upregulated. In addition, 20 genes were validated by RT-qPCR. Together, these data contribute to a better understanding of the molecular mechanisms triggered by the <i>Aaa</i> in sugarcane and opens the opportunity for the development of molecular markers associated with disease tolerance in breeding programs.</p></div