The fire dance of the Fort Sill Chiricahua/Warm Springs Apache

Thesis (M. Mus.)--University of Oklahoma, 2002.Includes bibliographical references

Toxic ferns of Western Australia

Botanical descriptions and notes on the distribution of six species of ferns are given. These plants contain the enzyme thiaminase, which may induce thiamin deficiency, or other constituents toxic to animals. The clinical signs of both thiamin deficiency and fern toxicity in affected livestock are described

Tropical Peatland Vegetation Structure and Biomass: Optimal Exploitation of Airborne Laser Scanning

Accurate estimation of above ground biomass (AGB) is required to better understand the variability and dynamics of tropical peat swamp forest (PSF) ecosystem function and resilience to disturbance events. The objective of this work is to examine the relationship between tropical PSF AGB and small-footprint airborne Light Detection and Ranging (LiDAR) discrete return (DR) and full waveform (FW) derived metrics, with a view to establishing the optimal use of this technology in this environment. The study was undertaken in North Selangor peat swamp forest (NSPSF) reserve, Peninsular Malaysia. Plot-based multiple regression analysis was performed to established the strongest predictive models of PSF AGB using DR metrics (only), FW metrics (only), and a combination of DR and FW metrics. Overall, the results demonstrate that a Combination-model, coupling the benefits derived from both DR and FW metrics, had the best performance in modelling AGB for tropical PSF (R2 = 0.77, RMSE = 36.4, rRMSE = 10.8%); however, no statistical difference was found between the rRMSE of this model and the best models using only DR and FW metrics. We conclude that the optimal approach to using airborne LiDAR for the estimation of PSF AGB is to use LiDAR metrics that relate to the description of the mid-canopy. This should inform the use of remote sensing in this ecosystem and how innovation in LiDAR-based technology could be usefully deployed

Low volumes of quartz cement in deeply buried Fulmar Formation sandstones explained by a low effective stress burial history

Upper Jurassic Fulmar Formation sandstones from the Fulmar Field in the Central North Sea are buried to 3.2 km and 128 °C but contain only 3.7 ± 1.7% (1σ) quartz cement, substantially less than volumes predicted by models based on temperature-related quartz precipitation kinetics. Oxygen isotope microanalysis of quartz overgrowths suggests that only limited cementation occurred at temperatures above 110 °C. We suggest that the anomalously low volumes of quartz cement are most readily explained by the effective stress history of the Fulmar Formation. Regional pore pressure analysis strongly suggests that pore fluid pressures in the Fulmar Formation decreased substantially in the last <0.5 Ma as a result of lateral seal failure, increasing effective stress from ca. 10 MPa to the current 31 MPa. A recent increase in effective stress is supported by the common occurrence of grains that are both fractured and unhealed by quartz cement. Intergranular pressure dissolution can account for around one third of the observed quartz cement, with the remainder from deep burial feldspar dissolution. We argue that the continuous history of low effective stress, until the very recent geological past, limited the rate of silica supply by intergranular pressure dissolution, and thus the rate of quartz cementation. Effective stress histories should be incorporated into predictive models of quartz cementation of sandstones

A micromechanical investigation of diagenetically-induced changes to the anisotropic elastic properties of calcareous mudstones

Microscale diagenetic changes that occur during burial exert a profound influence on the elastic and mechanical properties of sediments—but are poorly quantified. The focus here is on how diagenesis influences the elastic properties of carbonate-rich mudstones, which are subject to a wide range of physical and chemical changes. Nanoindentation data for gas-window (180 C) Eagle Ford formation samples give intrinsic indentation moduli of the clay-sized calcite matrix of 40–50 GPa, which contrasts with 60–77 GPa for diagenetic calcite fills of foraminifera tests, closer to values for highly crystalline calcite. The matrix calcite is weakly anisotropic. Inverse analysis of immature (< 70 C) organic-rich chalks gives much lower intrinsic indentation moduli for biogenic calcite, between 17 and 30 GPa; the calcite is also more anisotropic, with values of 1.3. Diagenesis, which includes recrystallisation and pore-filling cementation, results in calcite becoming elastically stiffer and behaving in an increasingly isotropic manner, in agreement with grain scale studies using atomic force microscopy. The results demonstrate that nanoindentation can resolve diagenetic contributions to the mechanical response of mudstones, and suggest intrinsic structural changes to calcite, in addition to diagenetic cementation, need to be accounted for in rock-physics models of mud-rich sediments

Response and Resistance to Paradox-Breaking BRAF Inhibitor in Melanomas

FDA-approved BRAF inhibitors produce high response rates and improve overall survival in patients with BRAF V600E/K-mutant melanoma, but are linked to pathologies associated with paradoxical ERK1/2 activation in wild-type BRAF cells. To overcome this limitation, a next-generation paradox-breaking RAF inhibitor (PLX8394) has been designed. Here, we show that by using a quantitative reporter assay, PLX8394 rapidly suppressed ERK1/2 reporter activity and growth of mutant BRAF melanoma xenografts. Ex vivo treatment of xenografts and use of a patient-derived explant system (PDeX) revealed that PLX8394 suppressed ERK1/2 signaling and elicited apoptosis more effectively than the FDA-approved BRAF inhibitor, vemurafenib. Furthermore, PLX8394 was efficacious against vemurafenibresistant BRAF splice variant-expressing tumors and reduced splice variant homodimerization. Importantly, PLX8394 did not induce paradoxical activation of ERK1/2 in wild-type BRAF cell lines or PDeX. Continued in vivo dosing of xenografts with PLX8394 led to the development of acquired resistance via ERK1/2 reactivation through heterogeneous mechanisms; however, resistant cells were found to have differential sensitivity to ERK1/2 inhibitor. These findings highlight the efficacy of a paradox-breaking selective BRAF inhibitor and the use of PDeX system to test the efficacy of therapeutic agents. © 2017 American Association for Cancer Research

Collective decision making and social interaction rules in mixed-species flocks of songbirds

Associations in mixed-species foraging groups are common in animals, yet have rarely been explored in the context of collective behaviour. Despite many investigations into the social and ecological conditions under which individuals should form groups, we still know little about the specific behavioural rules that individuals adopt in these contexts, or whether these can be generalized to heterospecifics. Here, we studied collective behaviour in flocks in a community of five species of woodland passerine birds. We adopted an automated data collection protocol, involving visits by RFID-tagged birds to feeding stations equipped with antennae, over two winters, recording 91 576 feeding events by 1904 individuals. We demonstrated highly synchronized feeding behaviour within patches, with birds moving towards areas of the patch with the largest proportion of the flock. Using a model of collective decision making, we then explored the underlying decision rule birds may be using when foraging in mixed-species flocks. The model tested whether birds used a different decision rule for conspecifics and heterospecifics, and whether the rules used by individuals of different species varied. We found that species differed in their response to the distribution of conspecifics and heterospecifics across foraging patches. However, simulating decisions using the different rules, which reproduced our data well, suggested that the outcome of using different decision rules by each species resulted in qualitatively similar overall patterns of movement. It is possible that the decision rules each species uses may be adjusted to variation in mean species abundance in order for individuals to maintain the same overall flock-level response. This is likely to be important for maintaining coordinated behaviour across species, and to result in quick and adaptive flock responses to food resources that are patchily distributed in space and time

FOXD3 Regulates VISTA Expression in Melanoma.

Immune checkpoint inhibitors have improved patient survival in melanoma, but the innate resistance of many patients necessitates the investigation of alternative immune targets. Many immune checkpoint proteins lack proper characterization, including V-domain Ig suppressor of T cell activation (VISTA). VISTA expression on immune cells can suppress T cell activity; however, few studies have investigated its expression and regulation in cancer cells. In this study, we observe that VISTA is expressed in melanoma patient samples and cell lines. Tumor cell-specific expression of VISTA promotes tumor onset in vivo, associated with increased intratumoral T regulatory cells, and enhanced PDL-1 expression on tumor-infiltrating macrophages. VISTA transcript levels are regulated by the stemness factor Forkhead box D3 (FOXD3). BRAF inhibition upregulates FOXD3 and reduces VISTA expression. Overall, this study demonstrates melanoma cell expression of VISTA and its regulation by FOXD3, contributing to the rationale for therapeutic strategies that combine targeted inhibitors with immune checkpoint blockade