The application of science and technology development in shaping current and future aquaculture production systems

Aquaculture development over the past 50 years has been facilitated largely by the application of science and the introduction of new technologies. Although aquaculture is a very diverse sector in products, production systems and business structures, almost every activity has benefitted from scientific advances. However, the impact of technological progress is most clearly seen where there has also been substantial industrial consolidation. This has provided greater capital resources for investment and a more attractive market for suppliers of innovations to target. It has also encouraged consolidation of research capacity and stronger articulation between private and publicly funded research efforts. Further development along current trajectories is possible through advances in genomics, information technology, materials science and other areas. However, there may also be substantial disruptions if, for instance, energy becomes much more expensive, or large mono-cultures are impacted by climate change. Substantial change could also be driven by policies that aim to bring realistic external costs of environmental services into company accounts. Research into more resilient aquaculture systems that comply more with ecological than financial accounting principles is under way, but will require substantial development to meet the challenges of rising food needs and social aspirations.Prepared as background for the UK Government Foresight Project on Global Food and Farming Future

Observation of a maternal transmission of scrapie in sheep

A pregnant ewe with suspected scrapie was referred to the Regional Veterinary Laboratory in Limoges on 11 January 2002, in compliance with the French scrapie eradication program. Western Blot confirmed the diagnosis of scrapie. Ten days later, the ewe gave birth. As we had to help the ewe, we were able to isolate the ewe lamb before she had any contact with her mother, and especially no colostrum. The ewe lamb was fed with milk replacers and isolated to prevent all possibility of horizontal transmission of scrapie. In August 2002, the first symptoms of scrapie appeared in the ewe lamb. Euthanasia was decided on 18 December 2002, as the animal was no longer able to stand. Western Blot and immunohistochemistry tests confirmed natural scrapie in the ewe lamb. PrP genotyping of this lamb was ARQ/VRQ. This first confirmed case of maternal transmission of scrapie in sheep is associated with a particularly short incubation time (6 months) in natural conditions.Dans le cadre du programme d'éradication de la tremblante en France, nous avons reçu une brebis gestante suspecte de tremblante le 11 janvier 2002, au laboratoire vétérinaire départemental de Limoges (confirmée ultérieurement par un Western Blot). Dix jours plus tard, la brebis agnela avec difficulté et nous avons dû intervenir pour l'aider. Cette assistance à l'agnelage nous permit d'isoler immédiatement le nouveau-né, en évitant tout contact ultérieur avec sa mère, en particulier sans la possibilité d'absorber le colostrum. L'agnelle fut placée dans un endroit isolé sans qu'il n'y ait de possibilité de transmission horizontale de la tremblante et fut nourrie avec des lactoremplaceurs. En août 2002, les premiers symptômes de la tremblante sont apparus chez l'agnelle née de cette brebis. Du fait d'une évolution vers le décubitus, l'euthanasie de l'agnelle fut décidée le 18 décembre 2002. La confirmation d'une tremblante naturelle chez l'agnelle a été obtenue par le Western-Blot et les examens immunohistochimiques. Le génotype de l'agnelle était ARQ/VRQ. Cette première confirmation d'une transmission maternelle de la tremblante chez le mouton s'accompagne aussi d'un temps d'incubation particulièrement court (6 mois) dans les conditions naturelles

ASaiM: A Galaxy-based framework to analyze microbiota data

Background: New generations of sequencing platforms coupled to numerous bioinformatics tools have led to rapid technological progress in metagenomics and metatranscriptomics to investigate complex microorganism communities. Nevertheless, a combination of different bioinformatic tools remains necessary to draw conclusions out of microbiota studies. Modular and user-friendly tools would greatly improve such studies. Findings: We therefore developed ASaiM, an Open-Source Galaxy-based framework dedicated to microbiota data analyses. ASaiM provides an extensive collection of tools to assemble, extract, explore, and visualize microbiota information from raw metataxonomic, metagenomic, or metatranscriptomic sequences. To guide the analyses, several customizable workflows are included and are supported by tutorials and Galaxy interactive tours, which guide users through the analyses step by step. ASaiM is implemented as a Galaxy Docker flavour. It is scalable to thousands of datasets but also can be used on a normal PC. The associated source code is available under Apache 2 license at https://github.com/ASaiM/framework and documentation can be found online (http://asaim.readthedocs.io). Conclusions: Based on the Galaxy framework, ASaiM offers a sophisticated environment with a variety of tools, workflows, documentation, and training to scientists working on complex microorganism communities. It makes analysis and exploration analyses of microbiota data easy, quick, transparent, reproducible, and shareable

Short Telomere Length Is Related to Limitations in Physical Function in Elderly European Adults

The present study aims to explore the potential influence of leucocyte telomere length (LTL) on both a single indicator and a composite construct of physical functioning in a large European population of elderly men and women across diverse geographical locations. A total of 1,221 adults (65–79 years) were recruited from five European countries within the framework of NU-AGE study. The physical functioning construct was based on the 36-item Short Form Health Survey. Handgrip strength was used as a single indicator of muscle function and LTL was assessed using quantitative real-time PCR. Women had significantly longer (p < 0.05) LTL than men. Participants in Poland had significantly shorter LTL than in the other study centers, whereas participants in the Netherlands had significantly longer LTL than most of the other centers (p < 0.01). An analysis of LTL as a continuous outcome against physical functioning by using linear models revealed inconsistent findings. In contrast, based on an analysis of contrasting telomere lengths (first vs. fifth quintile of LTL), a significant odds ratio (OR) of 1.7 (95% CI: 1.1 – 2.6; p < 0.05) of having functional limitation was observed in those belonging to the first LTL quintile compared to the fifth. Interestingly, having the shortest LTL was still related to a higher likelihood of having physical limitation when compared to all remaining quintiles (OR: 1.5, 95% CI: 1.1 – 2.1; p < 0.05), even after adjustment by study center, age, sex, and overweight status. Collectively, our findings suggest that short LTL is an independent risk factor that accounts for functional decline in elderly European populations. The influence of LTL on functional limitation seems driven by the detrimental effect of having short telomeres rather than reflecting a linear dose-response relationship

A Mediterranean-like dietary pattern with vitamin D3 (10 µg/d) supplements reduced the rate of bone loss in older Europeans with osteoporosis at baseline: results of a 1-y randomized controlled trial

Background: The Mediterranean diet (MD) is widely recommended for the prevention of chronic disease, but evidence for a beneficial effect on bone health is lacking.  Objective: The aim of this study was to examine the effect of a Mediterranean-like dietary pattern [NU-AGE (New Dietary Strategies Addressing the Specific Needs of the Elderly Population for Healthy Aging in Europe)] on indexes of inflammation with a number of secondary endpoints, including bone mineral density (BMD) and biomarkers of bone and collagen degradation in a 1-y multicenter randomized controlled trial (RCT; NU-AGE) in elderly Europeans.  Design: An RCT was undertaken across 5 European centers. Subjects in the intervention group consumed the NU-AGE diet for 1 y by receiving individually tailored dietary advice, coupled with supplies of foods including whole-grain pasta, olive oil, and a vitamin D3 supplement (10 µg/d). Participants in the control group were provided with leaflets on healthy eating available in their country.  Results: A total of 1294 participants (mean ± SD age: 70.9 ±4.0 y; 44% male) were recruited to the study and 1142 completed the 1-y trial. The Mediterranean-like dietary pattern had no effect on BMD (site-specific or whole-body); the inclusion of compliance to the intervention in the statistical model did not change the findings. There was also no effect of the intervention on the urinary biomarkers free pyridinoline or free deoxypyridinoline. Serum 25-hydroxyvitamin D significantly increased and parathyroid hormone decreased (P < 0.001) in the MD compared with the control group. Subgroup analysis of individuals with osteoporosis at baseline (site-specific BMD T-score ≤ −2.5 SDs) showed that the MD attenuated the expected decline in femoral neck BMD (n = 24 and 30 in MD and control groups, respectively; P = 0.04) but had no effect on lumbar spine or whole-body BMD.  Conclusions: A 1-y intervention of the Mediterranean-like diet together with vitamin D3 supplements (10 µg/d) had no effect on BMD in the normal age-related range, but it significantly reduced the rate of loss of bone at the femoral neck in individuals with osteoporosis. The NU-AGE trial is registered at clinicaltrials.gov as NCT01754012

Dietary intake of food bioactives in a cohort of European adults with metabolic syndrome enrolled in the Pathway-27 trial

Summer Conference 2018: Getting energy balance rightDietary intake of food bioactives in a cohort of European adults with metabolic syndrome enrolled in the Pathway-27 trial. Summer Meeting of the Nutrition Societ

Genomics and metagenomics of trimethylamine-utilizing Archaea in the human gut microbiome

International audienceThe biological significance of Archaea in the human gut microbiota is largely unclear. We recently reported genomic and biochemical analyses of the Methanomassiliicoccales, a novel order of methanogenic Archaea dwelling in soil and the animal digestive tract. We now show that these Methanomassiliicoccales are present in published microbiome data sets from eight countries. They are represented by five Operational Taxonomic Units present in at least four cohorts and phylogenetically distributed into two clades. Genes for utilizing trimethylamine (TMA), a bacterial precursor to an atherosclerogenic human metabolite, were present in four of the six novel Methanomassiliicoccales genomes assembled from ELDERMET metagenomes. In addition to increased microbiota TMA production capacity in long-term residential care subjects, abundance of TMA-utilizing Methanomassiliicoccales correlated positively with bacterial gene count for TMA production and negatively with fecal TMA concentrations. The two large Methanomassiliicoccales clades have opposite correlations with host health status in the ELDERMET cohort and putative distinct genomic signatures for gut adaptation

Vitamin B-6 intake is related to physical performance in European older adults: results of the New Dietary Strategies Addressing the Specific Needs of the Elderly Population for Healthy Aging in Europe (NU-AGE) study

BACKGROUND: Maintenance of high physical performance during aging might be supported by an adequate dietary intake of niacin, vitamins B-6 and B-12, and folate because these B vitamins are involved in multiple processes related to muscle functioning. However, not much is known about the association between dietary intake of these B vitamins and physical performance. OBJECTIVES: The objectives of this study were to investigate the association between dietary intake of niacin, vitamins B-6 and B-12, and folate and physical performance in older adults and to explore mediation by niacin status and homocysteine concentrations. METHODS: We used baseline data from the New Dietary Strategies Addressing the Specific Needs of the Elderly Population for Healthy Aging in Europe (NU-AGE) trial, which included n = 1249 healthy older adults (aged 65-79 y) with complete data on dietary intake measured with 7-d food records and questionnaires on vitamin supplement use and physical performance measured with the short physical performance battery and handgrip dynamometry. Associations were assessed by adjusted linear mixed models. RESULTS: Intake of vitamin B-6 was related to lower chair rise test time [β: -0.033 ± 0.016 s (log); P = 0.043]. Vitamin B-6 intake was also significantly associated with handgrip strength, but for this association, a significant interaction effect between vitamin B-6 intake and physical activity level was found. In participants with the lowest level of physical activity, higher intake of vitamin B-6 tended to be associated with greater handgrip strength (β: 1.5 ± 0.8 kg; P = 0.051), whereas in participants in the highest quartile of physical activity, higher intake was associated with lower handgrip strength (β: -1.4 ± 0.7 kg; P = 0.041). No evidence was found for an association between intake of niacin, vitamin B-12, or folate and physical performance or for mediation by niacin status or homocysteine concentrations. CONCLUSIONS: Vitamin B-6 intake was associated with better chair rise test time in a population of European healthy older adults and also with greater handgrip strength in participants with low physical activity only. Homocysteine concentrations did not mediate these associations. The NU-AGE trial was registered at clinicaltrials.gov as NCT01754012

Something old, something new: historical perspectives provide lessons for blue growth agendas

This is the author accepted manuscript. The final version is available from Wiley via the DOI in this record.The concept of ‘blue growth’, which aims to promote the growth of ocean economies whilst holistically managing marine socio-ecological systems, is emerging within national and international marine policy. The concept is often promoted as being novel, however, we show that, historical analogies exist which can provide insights for contemporary planning and implementation of blue growth. Using a case study approach based on expert knowledge, we identified 20 historical fisheries or aquaculture examples from 13 countries, spanning the last 40–800 years, that we contend embody blue growth concepts. This is the first time, to our knowledge, that blue growth has been investigated across such broad spatial and temporal scales. The past societies managed to balance exploitation with equitable access, ecological integrity, and/or economic growth for varying periods of time. Four main trajectories existed that led to the success or failure of blue growth. Success was linked to equitable rather than open access, innovation, and management that was responsive, holistic, and based on scientific knowledge and monitoring. The inability to achieve or maintain blue growth resulted from failures to address limits to industry growth and/or anticipate the impacts of adverse extrinsic events and drivers (e.g., changes in international markets, war), the prioritisation of short-term gains over long-term sustainability, and loss of supporting systems. Fourteen cross-cutting lessons and 10 recommendations were derived that can improve understanding and implementation of blue growth. Despite the contemporary literature broadly supporting our findings, these recommendations are not adequately addressed by agendas seeking to realize blue growth.European Commissio