Late Bronze Age climate change and the destruction of the Mycenaean Palace of Nestor at Pylos

This paper offers new high-resolution oxygen and carbon isotope data from Stalagmite S1 from Mavri Trypa Cave, SW Peloponnese. Our data provide the climate background to the destruction of the nearby Mycenaean Palace of Nestor at Pylos at the transition from Late Helladic (LH) IIIB to LH IIIC, similar to 3150-3130 years before present (before AD 1950, hereafter yrs BP) and the subsequent period. S1 is dated by 24 U-Th dates with an averaged precision of +/- 26 yrs (2s), providing one of the most robust paleoclimate records from the eastern Mediterranean for the end of the Late Bronze Age (LBA). The delta O-18 record shows generally wetter conditions at the time when the Palace of Nestor at Pylos was destroyed, but a brief period of drier conditions around 3200 yrs BP may have disrupted the Mycenaean agricultural system that at the time was likely operating close to its limit. Gradually developing aridity after 3150 yrs BP, i.e. subsequent to the destruction, probably reduced crop yields and helped to erode the basis for the reinstitution of a central authority and the Palace itself

Analysis of Bovine Viral Diarrhea Viruses-infected monocytes: identification of cytopathic and non-cytopathic biotype differences

<p>Abstract</p> <p>Background</p> <p>Bovine Viral Diarrhea Virus (BVDV) infection is widespread in cattle worldwide, causing important economic losses. Pathogenesis of the disease caused by BVDV is complex, as each BVDV strain has two biotypes: non-cytopathic (ncp) and cytopathic (cp). BVDV can cause a persistent latent infection and immune suppression if animals are infected with an ncp biotype during early gestation, followed by a subsequent infection of the cp biotype. The molecular mechanisms that underscore the complex disease etiology leading to immune suppression in cattle caused by BVDV are not well understood.</p> <p>Results</p> <p>Using proteomics, we evaluated the effect of cp and ncp BVDV infection of bovine monocytes to determine their role in viral immune suppression and uncontrolled inflammation. Proteins were isolated by differential detergent fractionation and identified by 2D-LC ESI MS/MS. We identified 137 and 228 significantly altered bovine proteins due to ncp and cp BVDV infection, respectively. Functional analysis of these proteins using the Gene Ontology (GO) showed multiple under- and over- represented GO functions in molecular function, biological process and cellular component between the two BVDV biotypes. Analysis of the top immunological pathways affected by BVDV infection revealed that pathways representing macropinocytosis signalling, virus entry via endocytic pathway, integrin signalling and primary immunodeficiency signalling were identified only in ncp BVDV-infected monocytes. In contrast, pathways like actin cytoskeleton signalling, RhoA signalling, clathrin-mediated endocytosis signalling and interferon signalling were identified only in cp BDVD-infected cells. Of the six common pathways involved in cp and ncp BVDV infection, acute phase response signalling was the most significant for both BVDV biotypes. Although, most shared altered host proteins between both BVDV biotypes showed the same type of change, integrin alpha 2b (ITGA2B) and integrin beta 3 (ITGB3) were down- regulated by ncp BVDV and up- regulated by cp BVDV infection.</p> <p>Conclusions</p> <p>This study shows that, as we expected, there are significant functional differences in the host proteins that respond to cp or ncp BVDV infection. The combined use of GO and systems biology network modelling facilitated a better understanding of host-pathogen interactions.</p

The SISAL database: a global resource to document oxygen and carbon isotope records from speleothems

Stable isotope records from speleothems provide information on past climate changes, most particularly information that can be used to reconstruct past changes in precipitation and atmospheric circulation. These records are increasingly being used to provide “out-of-sample” evaluations of isotope-enabled climate models. SISAL (Speleothem Isotope Synthesis and Analysis) is an international working group of the Past Global Changes (PAGES) project. The working group aims to provide a comprehensive compilation of speleothem isotope records for climate reconstruction and model evaluation. The SISAL database contains data for individual speleothems, grouped by cave system. Stable isotopes of oxygen and carbon (δ 18O, δ 13C) measurements are referenced by distance from the top or bottom of the speleothem. Additional tables provide information on dating, including information on the dates used to construct the original age model and sufficient information to assess the quality of each data set and to erect a standardized chronology across different speleothems. The metadata table provides location information, information on the full range of measurements carried out on each speleothem and information on the cave system that is relevant to the interpretation of the records, as well as citations for both publications and archived data. The compiled data are available at https://doi.org/10.17864/1947.147

Evaluating model outputs using integrated global speleothem records of climate change since the last glacial

Although quantitative isotopic data from speleothems has been used to evaluate isotope-enabled model simulations, currently no consensus exists regarding the most appropriate methodology through which to achieve this. A number of modelling groups will be running isotope-enabled palaeoclimate simulations in the framework of the Coupled Model Intercomparison Project Phase 6, so it is timely to evaluate different approaches to use the speleothem data for data-model comparisons. Here, we illustrate this using 456 globally-distributed speleothem δ18O records from an updated version of the Speleothem Isotopes Synthesis and Analysis (SISAL) database and palaeoclimate simulations generated using the ECHAM5-wiso isotope-enabled atmospheric circulation model. We show that the SISAL records reproduce the first-order spatial patterns of isotopic variability in the modern day, strongly supporting the application of this dataset for evaluating model-derived isotope variability into the past. However, the discontinuous nature of many speleothem records complicates procuring large numbers of records if data-model comparisons are made using the traditional approach of comparing anomalies between a control period and a given palaeoclimate experiment. To circumvent this issue, we illustrate techniques through which the absolute isotopic values during any time period could be used for model evaluation. Specifically, we show that speleothem isotope records allow an assessment of a model’s ability to simulate spatial isotopic trends. Our analyses provide a protocol for using speleothem isotopic data for model evaluation, including screening the observations to take into account the impact of speleothem mineralogy on 18O values, the optimum period for the modern observational baseline, and the selection of an appropriate time-window for creating means of the isotope data for palaeo time slices

Speleothems from Warm Climates : Holocene Records from the Caribbean and Mediterranean Regions

This thesis contributes to increased knowledge on Holocene climate and environmental variability from two complex and sparsely studied areas. Using a speleothem from Gasparee Cave, Trinidad, as a paleoclimate archive, the local expression of the 8.2 ka (thousand years before 1950) climate event and associated patterns of the inter-tropical convergence zone (ITCZ) and rainfall is provided. Subsequent speleothem studies using multi-proxy analysis of stalagmites from Kapsia Cave and Alepotrypa Cave, Greece, provide records of climate, vegetation and human induced changes in the cave environment during parts of the Holocene. The speleothems from the well-studied Neolithic habitation site, Alepotrypa Cave, have produced a climate and habitation record which covers the period of 6.3-1.0 ka. The cave was inhabited between 8.0-5.2 ka and was closed by a tectonic event, which has preserved the settlement. The stable oxygen record shows the first well-dated and robust expression of the 4.2 ka dry event in the Peloponnese, places the timing of the 3.2 ka dry event within an ongoing dry period, and shows a final dry event at 1.6 ka. The North Atlantic as well as more regional drivers, such as the North Sea Caspian Pattern Index is proposed to, in a complex interplay, govern many of the climate trends and events observed. Trace element variation after the site is abandoned indicate what is interpreted as two volcanic eruptions, the Minoan eruption of Thera (Santorini) around 3.6 ka and the 2.7 ka eruption of Somma (Vesuvius). Variations in trace elements during the habitation period show clear human influence, indicating an association with specific cave activities. One of the most interesting prospects for continued work on Alepotrypa Cave is this successful marriage of speleothem studies and archeology. A framework of dates which constrain some behavior of people living in the cave is only the beginning, and there is great potential to continue finding new clues in the speleothem data.Denna avhandling bidrar till ökad kunskap om klimatets variationer och miljön i två geografiskt skilda områden på låga breddgrader och under tidsperioder inom den Holocena epoken. Genom att använda en droppsten (stalagmit) från Gasparee-grottan, Trinidad, som ett paleoklimatarkiv, har det bland annat varit möjligt att visa att Trinidad upplevde torrare förhållanden under den snabba klimatförändring som observerats ske för 8200 år sedan på många platser i världen. Denna torrare klimatsituation i Trinidad föreslås vara ett resultat av en sydlig förflyttning av den intertropiska konvergenszonen. Övriga stalagmiter som studerats för denna avhandling kommer från Kapsia-grottan och Alepotrypa-grottan som finns på Peloponnesos-halvön i Grekland. Resultaten därifrån speglar dels klimat- och vegetationsvariatoner och dels graden av mänsklig aktivitet, under tiden för ca 8000 år sedan till för 1000 år sedan. Alepotrypa-grottan är känd för att vara en av de större Neolitiska boplatserna i Grekland. Isotop- och spårämnesanalyser av stalagmiterna har bidragit med ny kunskap om tidpunkten för mänsklig aktivitet, hur människorna påverkade grott-miljön samt hur klimatet varierat efter det att grottan, genom en tektonisk händelse, stängdes för människans inverkan. Snabba klimatförändringar, för 4200 och 3200 år sedan, observerade i andra regioner, rekonstrueras här för första gången på Peloponnesos. En snabb förändring mot torrare förhållanden observeras även för 1600 år sedan. De klimatstyrande processerna föreslås vara en kombination av storskaliga processer som den nordatlantiska oscillationen och mer regionala processer som det så kallade North Sea Caspian Pattern Index. Variationer i spårämnen i stalagmiterna efter att Alepotrypa-grottan stängdes kan kopplas till två vulkaniska utbrott, nämligen det Minoiska utbrottet av Thera på ön Santorini kring 3600 år sedan och utbrottet av Somma (Vesuvius) kring 2700 år sedan. Spårämnesvariationer under bo-perioden ger tydliga indikationer på människans påverkan på grottmiljön och som delvis kan länkas till specifika aktiviteter, som eldning av dynga i grottan. Avhandlingen är ett resultat av en framgångsrik kombination av klimatstudier och arkeologisk kunskap och utgör ett viktigt underlag för fördjupat interdisciplinärt forskningssamarbete i Alepotrypa-grottan.At the time of the doctoral defense, the following papers were unpublished and had a status as follows: Paper 1: Manuscript. Paper 4: Manuscript. Paper 5: Manuscript. Paper 6: Manuscript.</p

Can XRF scanning of speleothems be used as a non-destructive method to identify paleoflood events in caves?

We have developed a novel, quick and non-destructive method for tracing flood events in caves through the analysis of a stalagmite thick section with an XRF core scanner. The analyzed stalagmite has multiple horizons of fine sediments from past flood events intercalated with areas of cleaner calcite. Flood events detected from the elemental XRF core scanning data show good agreement with the position of flood horizons identified in petrographic thin sections. The geochemical composition of the individual flood layers shows that in certain cases the clay horizons had a distinct geochemical fingerprint suggesting that it may be possible to distinguish individual flood layers based on their geochemistry. This presents the possibility for using flood events as marker horizons to chronologically tie different speleothems in a cave to each other

Main controls on the stable carbon isotope composition of speleothems

The climatic controls on the stable carbon isotopic composition (d13C) of speleothem carbonate are less often discussed in the scientific literature in contrast to the frequently used stable oxygen isotopes. Various local processes influence speleothem d13C values and confident and detailed interpretations of this proxy are often complex. A better understanding of speleothem d13C values is critical to improving the amount of information that can be gained from existing and future records. This con- tribution aims to disentangle the various processes governing speleothem d13C values and assess their relative importance. Using a large data set of previously published records we examine the spatial imprint of climate-related processes in spe- leothem d13C values deposited post-1900 CE, a period during which global temperature and climate data is readily available. Additionally, we investigate the causes for differences in average d13C values and growth rate under identical climatic condi- tions by analysing pairs of contemporaneously deposited speleothems from the same caves. This approach allows to focus on carbonate dissolution and fractionation processes during carbonate precipitation, which we evaluate using existing geochem- ical models. Our analysis of a large global data set of records reveals evidence for a temperature control, likely driven by veg- etation and soil processes, on d13C values in recently deposited speleothems. Moreover, data-model intercomparison shows that calcite precipitation occurring along water flow paths prior to reaching the top of the speleothem can explain the wide d13C range observed for concurrently deposited samples from the same cave. We demonstrate that using the combined infor- mation of contemporaneously growing speleothems is a powerful tool to decipher controls on d13C values, which facilitates a more detailed discussion of speleothem d13C values as a proxy for climate conditions and local soil-karst processes.status: publishe

Main controls on the stable carbon isotope composition of speleothems

The climatic controls on the stable carbon isotopic composition (δ13C) of speleothem carbonate are less often discussed in the scientific literature in contrast to the frequently used stable oxygen isotopes. Various local processes influence speleothem δ13C values and confident and detailed interpretations of this proxy are often complex. A better understanding of speleothem δ13C values is critical to improving the amount of information that can be gained from existing and future records. This contribution aims to disentangle the various processes governing speleothem δ13C values and assess their relative importance. Using a large data set of previously published records we examine the spatial imprint of climate-related processes in speleothem δ13C values deposited post-1900 CE, a period during which global temperature and climate data is readily available. Additionally, we investigate the causes for differences in average δ13C values and growth rate under identical climatic conditions by analysing pairs of contemporaneously deposited speleothems from the same caves. This approach allows to focus on carbonate dissolution and fractionation processes during carbonate precipitation, which we evaluate using existing geochemical models. Our analysis of a large global data set of records reveals evidence for a temperature control, likely driven by vegetation and soil processes, on δ13C values in recently deposited speleothems. Moreover, data-model intercomparison shows that calcite precipitation occurring along water flow paths prior to reaching the top of the speleothem can explain the wide δ13C range observed for concurrently deposited samples from the same cave. We demonstrate that using the combined information of contemporaneously growing speleothems is a powerful tool to decipher controls on δ13C values, which facilitates a more detailed discussion of speleothem δ13C values as a proxy for climate conditions and local soil-karst processes

Stable oxygen isotopes as a proxy for precipitation showing wetter and drier periods through time.

<p>A: Full sequence of stable oxygen isotopes from S1 plotted against time. Individual U-Th ages presented as black circles, error bars show 2σ uncertainties. B: Stable oxygen isotope results covering the Late Bronze Age (LBA) and Early Iron Age (EIA). The sub-periods of the LBA (Late Helladic (LH) I to LH IIIC) and the Protogeometric (PG) are shown together with the suggested period when the Palace of Nestor at Pylos was destroyed based on information from [<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0189447#pone.0189447.ref027" target="_blank">27</a>,<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0189447#pone.0189447.ref029" target="_blank">29</a>,<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0189447#pone.0189447.ref031" target="_blank">31</a>].</p

Location map.

<p>The location of Mavri Trypa Cave in relation to the Mycenaean Palace of Nestor at Pylos and other paleoclimate records mentioned in the text. Map made with Natural Earth.</p