The significance of the amorphous potential energy landscape for dictating glassy dynamics and driving solid-state crystallisation

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Microfluidic chip for culturing intestinal epithelial cell layers: Characterization and comparison of drug transport between dynamic and static models

Dynamic flow in vitro models are currently widely explored for their applicability in drug development research. The application of gut-on-chip models in toxicology is lagging behind. Here we report the application of a gut-on-chip model for biokinetic studies and compare the observed biokinetics of reference compounds with those obtained using a conventional static in vitro model. Intestinal epithelial Caco-2 cells were cultured on a porous membrane assembled between two glass flow chambers for the dynamic model, or on a porous membrane in a Transwell model. Confocal microscopy, lucifer yellow translocation, and alkaline phosphatase activity evaluation revealed that cells cultured in the gut-on-chip model formed tight, differentiated, polarized monolayers like in the static cultures. In the dynamic gut-on-chip model the transport of the high permeability compounds antipyrine, ketoprofen and digoxin was lower (i.e. 4.2-, 2.7- and 1.9-fold respectively) compared to the transport in the static Transwell model. The transport of the low permeability compound, amoxicillin, was similar in both the dynamic and static in vitro model. The obtained transport values of the compounds are in line with the compound Biopharmaceuticals Classification System. It is concluded that the gut-on-chip provides an adequate model for transport studies of chemicals

Light to Shape the Future: From Photolithography to 4D Printing

Over the last few decades, the demand of polymeric structures with well-defined features of different size, dimension, and functionality has increased from various application areas, including microelectronics, biotechnology, tissue engineering, and photonics, among others. The ability of light to control over space and time physicochemical processes is a unique tool for the structuring of polymeric materials, opening new avenues for technological progress in different fields of application. This article gives an overview of various photochemical reactions in polymers, photosensitive materials, and structuring techniques making use of light, and highlights most recent advances, emerging opportunities, and relevant applications

Dirac electrons in graphene-based quantum wires and quantum dots

In this paper we analyse the electronic properties of Dirac electrons in finite-size ribbons and in circular and hexagonal quantum dots made of graphene.Comment: Contribution for J. Phys.: Cond. Mat. special issue on graphene physic

Line Defects in Molybdenum Disulfide Layers

Layered molecular materials and especially MoS2 are already accepted as promising candidates for nanoelectronics. In contrast to the bulk material, the observed electron mobility in single-layer MoS2 is unexpectedly low. Here we reveal the occurrence of intrinsic defects in MoS2 layers, known as inversion domains, where the layer changes its direction through a line defect. The line defects are observed experimentally by atomic resolution TEM. The structures were modeled and the stability and electronic properties of the defects were calculated using quantum-mechanical calculations based on the Density-Functional Tight-Binding method. The results of these calculations indicate the occurrence of new states within the band gap of the semiconducting MoS2. The most stable non-stoichiometric defect structures are observed experimentally, one of which contains metallic Mo-Mo bonds and another one bridging S atoms

A Review of Flight-Initiation Distances and their Application to Managing Disturbance to Australian Birds

Disturbance – the response of birds to a stimulus such as the presence of a person – is considered a conservation threat for some Australian birds. The distance at which a bird flees from perceived danger is defined as the flight-initiation distance (FID), and could be used to designate separation distances between birds and stimuli that might cause disturbance. We review the known FIDs for Australian birds, and report FIDs for 250 species. Most FIDs are from south-eastern Australia, and almost all refer to a single walker as the stimulus. Several prominent factors correlated with FID are discussed (e.g. body mass and the distance at which an approach begins). FIDs have not been used extensively in the management of disturbance, for a variety of reasons including lack and inaccessibility of available data. We call for standardised data collection and greater application of available data to the management of disturbance

Dimensionality of Carbon Nanomaterials Determines the Binding and Dynamics of Amyloidogenic Peptides: Multiscale Theoretical Simulations

Experimental studies have demonstrated that nanoparticles can affect the rate of protein self-assembly, possibly interfering with the development of protein misfolding diseases such as Alzheimer's, Parkinson's and prion disease caused by aggregation and fibril formation of amyloid-prone proteins. We employ classical molecular dynamics simulations and large-scale density functional theory calculations to investigate the effects of nanomaterials on the structure, dynamics and binding of an amyloidogenic peptide apoC-II(60-70). We show that the binding affinity of this peptide to carbonaceous nanomaterials such as C60, nanotubes and graphene decreases with increasing nanoparticle curvature. Strong binding is facilitated by the large contact area available for π-stacking between the aromatic residues of the peptide and the extended surfaces of graphene and the nanotube. The highly curved fullerene surface exhibits reduced efficiency for π-stacking but promotes increased peptide dynamics. We postulate that the increase in conformational dynamics of the amyloid peptide can be unfavorable for the formation of fibril competent structures. In contrast, extended fibril forming peptide conformations are promoted by the nanotube and graphene surfaces which can provide a template for fibril-growth

Different methodologies for calculating crown volume of Platanus hispanica trees by terrestial laser scanner and comparison with classical dendrometric measurements

Terrestrial laser scanners (TLSs) are used in forestry and fruit culture applications to perform a threedimensional geometrical characterization of trees and so make it easier to develop management systems based on that information. In addition, this data can improve the accuracy of dendrometric variable estimations, such as crown volume, obtained by standard methods. The main objective of this paper is to compare classical methods for crown volume estimation with the volumes obtained from the processing of point clouds obtained using a terrestrial laser scanner (TLS) on urban Platanus hispanica trees. This will allow faster quantification of residual biomass from pruning and therefore an improved management in future. The methods applied using TLS data were also evaluated in terms of processing speed. A set of 30 specimens were selected and their main dendrometric parameters (such as diameter breast height, crown diameter, total height, and distance from the crown base to the soil) were manually measured using classical methods. From these dendrometric parameters, the apparent crown volumes were calculated using three geometric models: cone, hemisphere, and paraboloid. Simultaneously, these trees were scanned with a Leica ScanStation2. A laser point cloud was registered for each tree and processed to obtain the crown volumes. Four processing methods were analyzed: (a) convex hull (an irregular polyhedral surface formed by triangles that surround the crown) applied to the whole point cloud that forms the crown; (b) convex hull using slices of 10 cm in height from the top to the base of the crown; (c) XY triangulation in horizontal sections; and (d) voxel discretization. All the obtained volumes (derived from classical methods and TLS) were assessed and compared. The regression equations that compare the volumes obtained by dendrometry and those derived from TLS data showed coefficients of determination (R2) greater than 0.78. The highest R2 (0.89) was obtained in the comparison between the volume calculated using a paraboloid and flat sections, which was also the fastest method. These results show the potential of TLS for predicting the crown volumes of urban trees, such as P. hispanica, to help improve their management, especially the quantification of residual biomass.The authors appreciate the financial support provided by the Spanish Ministry of Science and Innovation in the framework of the Project AGL2010-15334 and by the Generalitat Valenciana in the framework of the Project GV/2012/003.Fernández-Sarría, A.; Martínez, L.; Velázquez Martí, B.; Sajdak, M.; Estornell Cremades, J.; Recio Recio, JA. (2013). Different methodologies for calculating crown volume of Platanus hispanica trees by terrestial laser scanner and comparison with classical dendrometric measurements. Computers and Electronics in Agriculture. 90(1):176-185. https://doi.org/10.1016/j.compag.2012.09.017S17618590

Myeloid ATP citrate lyase regulates macrophage inflammatory responses in vitro without altering inflammatory disease outcomes

Macrophages are highly plastic, key regulators of inflammation. Deregulation of macrophage activation can lead to excessive inflammation as seen in inflammatory disorders like atherosclerosis, obesity, multiple sclerosis and sepsis. Targeting intracellular metabolism is considered as an approach to reshape deranged macrophage activation and to dampen the progression of inflammatory disorders. ATP citrate lyase (Acly) is a key metabolic enzyme and an important regulator of macrophage activation. Using a macrophage-specific Acly-deficient mouse model, we investigated the role of Acly in macrophages during acute and chronic inflammatory disorders. First, we performed RNA sequencing to demonstrate that Acly-deficient macrophages showed hyperinflammatory gene signatures in response to acute LPS stimulation in vitro. Next, we assessed endotoxin-induced peritonitis in myeloid-specific Acly-deficient mice and show that, apart from increased splenic Il6 expression, systemic and local inflammation were not affected by Acly deficiency. Also during obesity, both chronic low-grade inflammation and whole-body metabolic homeostasis remained largely unaltered in mice with Acly-deficient myeloid cells. Lastly, we show that macrophage-specific Acly deletion did not affect the severity of experimental autoimmune encephalomyelitis (EAE), an experimental model of multiple sclerosis. These results indicate that, despite increasing inflammatory responses in vitro, macrophage Acly deficiency does not worsen acute and chronic inflammatory responses in vivo. Collectively, our results indicate that caution is warranted in prospective long-term treatments of inflammatory disorders with macrophage-specific Acly inhibitors. Together with our earlier observation that myeloid Acly deletion stabilizes atherosclerotic lesions, our findings highlight that therapeutic targeting of macrophage Acly can be beneficial in some, but not all, inflammatory disorders.Host-parasite interactio

Capture the growth kinetics of CVD growth of two-dimensional MoS 2

Understanding the microscopic mechanism is fundamental for function-oriented controlled chemical vapor deposition growth of two-dimensional (2D) materials. In this work, we reveal the growth kinetics of 2D MoS2 by capturing the nucleation seeds, evolving morphology, edge structure, and edge terminations at the atomic scale during chemical vapor deposition growth using the transmission electron microscopy and scanning transmission electron microscopy. The direct growth of few-layer and mono-layer MoS2 onto graphene-based transmission electron microscopy grids helped us to perform the subsequent transmission electron microscopy characterization without any solution-based transfer. Two seeding centers are observed: (i) Mo-oxysulfide (MoO x S2−y ) nanoparticles either in multi-shelled fullerene-like structures or as compact nanocrystals for the growth of fewer-layer MoS2; (ii) Mo-S atomic clusters. In the early stage growth, irregular polygons with two primary edge terminations, S-Mo Klein edges and Mo zigzag edges, appear approximately in equal numbers. The morphology evolves into a near-triangle shape in which Mo zigzag edges predominate. Results from density-functional theory calculations are consistent with the inferred growth kinetics, and thus support the growth mechanism we proposed. In general, the growth mechanisms found here should also be applicable in other 2D materials, such as MoSe2, WS2 and WSe2