A Constrained Coding Approach to Error-Free Half-Duplex Relay Networks

We show that the broadcast capacity of an infinite-depth tree-structured network of error-free half-duplex-constrained relays can be achieved using constrained coding at the source and symbol forwarding at the relays.Comment: To appear in IEEE Transactions on Information Theory, 201

Modelling lake cyanobacterial blooms:disentangling the climate-driven impacts of changing mixed depth and water temperature

1. Climate change is already having profound impacts upon the state and dynamics of lake ecosystems globally. A specific concern is that climate change will continue to promote the growth of phytoplankton, particularly blooms of toxic cyanobacteria, via lake physical processes including warming surface waters and shallowing of the mixed layer. These two mechanisms will have different impacts on lake phytoplankton communities, but their inter-connectedness has made it difficult to disentangle their independent effects. 2. We fill this knowledge gap by performing 1666 numerical modelling experiments with the phytoplankton community model, PROTECH, in which we separated the independent effects on lake phytoplankton of temperature change and changes in the depth of the surface mixed layer. Given the large global abundance of small lakes (< 1 km2) and the importance of their ecosystems in global processes and budgets, we used a small meso-eutrophic lake as an example study site for the modelling experiments. 3. Increasing the lake temperature and positioning the mixed layer at a shallower depth had different ecological impacts, with warming typically resulting in more biomass and a dominance of cyanobacteria. 4. The response to mixed depth shallowing depended on the original depth where mixing occurred. As anticipated, where the original mixed depth was moderate (4–6 m) and there was a simultaneous increase in water temperature, cyanobacterial biomass increased. However, when the same absolute difference in shallowing and temperature increase were applied to a deeper mixed depth (9–13 m), lower cyanobacterial biomass resulted, owing to poorer conditions for low-light tolerant cyanobacteria. 5. Our study shows that the response of cyanobacterial blooms to climate-induced warming and shallowing of mixed layers in lakes around the world will not be universal, but rather will be system-specific, depending upon the average mixed layer depth of the lake in question and the light affinity of the dominant cyanobacteria species

Wide-spread inconsistency in estimation of lake mixed depth impacts interpretation of limnological processes

The mixed layer, or epilimnion, is a physical concept referring to an isothermal layer at the surface of a water body. This concept is ubiquitous within limnology, is fundamental to our understanding of chemical and ecological processes, and is an important metric for water body monitoring, assessment and management. Despite its importance as a metric, many different approaches to approximating mixed depth currently exist. Using data from field campaigns in a small meso-eutrophic lake in the UK in 2016 and 2017 we tested whether different definitions of mixed depth resulted in comparable estimates and whether variables other than temperature could be assumed to be mixed within the layer. Different methods resulted in very different estimates for the mixed depth and ecologically important variables were not necessarily homogenously spread through the epilimnion. Furthermore, calculation of simple ecologically relevant metrics based on mixed depth showed that these metrics were highly dependent on the definition of mixed depth used. The results demonstrate that an idealised concept of a well-defined fully mixed layer is not necessarily appropriate. The widespread use of multiple definitions for mixed depth impairs the comparability of different studies while associated uncertainty over the most appropriate definition limits the confirmability of studies utilising the mixed depths

Modelling lake cyanobacterial blooms: disentangling the climate‐driven impacts of changing mixed depth and water temperature

1. Climate change is already having profound impacts upon the state and dynamics of lake ecosystems globally. A specific concern is that climate change will continue to promote the growth of phytoplankton, particularly blooms of toxic cyanobacteria, via lake physical processes including warming surface waters and shallowing of the mixed layer. These two mechanisms will have different impacts on lake phytoplankton communities, but their inter‐connectedness has made it difficult to disentangle their independent effects. 2. We fill this knowledge gap by performing 1666 numerical modelling experiments with the phytoplankton community model, PROTECH, in which we separated the independent effects on lake phytoplankton of temperature change and changes in the depth of the surface mixed layer. Given the large global abundance of small lakes (<1 km2) and the importance of their ecosystems in global processes and budgets, we used a small meso‐eutrophic lake as an example study site for the modelling experiments. 3. Increasing the lake temperature and positioning the mixed layer at a shallower depth had different ecological impacts, with warming typically resulting in more biomass and a dominance of cyanobacteria. 4. The response to mixed depth shallowing depended on the original depth where mixing occurred. As anticipated, where the original mixed depth was moderate (4–6 m) and there was a simultaneous increase in water temperature, cyanobacterial biomass increased. However, when the same absolute difference in shallowing and temperature increase were applied to a deeper mixed depth (9–13 m), lower cyanobacterial biomass resulted, owing to poorer conditions for low‐light tolerant cyanobacteria. 5. Our study shows that the response of cyanobacterial blooms to climate‐induced warming and shallowing of mixed layers in lakes around the world will not be universal, but rather will be system‐specific, depending upon the average mixed layer depth of the lake in question and the light affinity of the dominant cyanobacteria species

Mesoscale subduction at the Almeria-Oran front. Part 2: biophysical interactions.

This paper presents a detailed diagnostic analysis of hydrographic and current meter data from three, rapidly repeated, fine-scale surveys of the Almeria–Oran front. Instability of the frontal boundary, between surface waters of Atlantic and Mediterranean origin, is shown to provide a mechanism for significant heat transfer from the surface layers to the deep ocean in winter. The data were collected during the second observational phase of the EU funded OMEGA project on RRS Discovery cruise 224 during December 1996. High resolution hydrographic measurements using the towed undulating CTD vehicle, SeaSoar, traced the subduction of Mediterranean Surface Water across the Almeria–Oran front. This subduction is shown to result from a significant baroclinic component to the instability of the frontal jet. The Q-vector formulation of the omega equation is combined with a scale analysis to quantitatively diagnose vertical transport resulting from mesoscale ageostrophic circulation. The analyses are presented and discussed in the presence of satellite and airborne remotely sensed data; which provide the basis for a thorough and novel approach to the determination of observational error

An ultrasoft X-ray multi-microbeam irradiation system for studies of DNA damage responses by fixed- and live-cell fluorescence microscopy

Localized induction of DNA damage is a valuable tool for studying cellular DNA damage responses. In recent decades, methods have been developed to generate DNA damage using radiation of various types, including photons and charged particles. Here we describe a simple ultrasoft X-ray multi-microbeam system for high dose-rate, localized induction of DNA strand breaks in cells at spatially and geometrically adjustable sites. Our system can be combined with fixed- and live-cell microscopy to study responses of cells to DNA damage

The early bee catches the flower - circadian rhythmicity influences learning performance in honey bees, Apis mellifera

Circadian rhythmicity plays an important role for many aspects of honey bees’ lives. However, the question whether it also affects learning and memory remained unanswered. To address this question, we studied the effect of circadian timing on olfactory learning and memory in honey bees Apis mellifera using the olfactory conditioning of the proboscis extension reflex paradigm. Bees were differentially conditioned to odours and tested for their odour learning at four different “Zeitgeber” time points. We show that learning behaviour is influenced by circadian timing. Honey bees perform best in the morning compared to the other times of day. Additionally, we found influences of the light condition bees were trained at on the olfactory learning. This circadian-mediated learning is independent from feeding times bees were entrained to, indicating an inherited and not acquired mechanism. We hypothesise that a co-evolutionary mechanism between the honey bee as a pollinator and plants might be the driving force for the evolution of the time-dependent learning abilities of bees

A New Integrated Variable Based on Thermometry, Actimetry and Body Position (TAP) to Evaluate Circadian System Status in Humans

The disruption of the circadian system in humans has been associated with the development of chronic illnesses and the worsening of pre-existing pathologies. Therefore, the assessment of human circadian system function under free living conditions using non-invasive techniques needs further research. Traditionally, overt rhythms such as activity and body temperature have been analyzed separately; however, a comprehensive index could reduce individual recording artifacts. Thus, a new variable (TAP), based on the integrated analysis of three simultaneous recordings: skin wrist temperature (T), motor activity (A) and body position (P) has been developed. Furthermore, we also tested the reliability of a single numerical index, the Circadian Function Index (CFI), to determine the circadian robustness. An actimeter and a temperature sensor were placed on the arm and wrist of the non-dominant hand, respectively, of 49 healthy young volunteers for a period of one week. T, A and P values were normalized for each subject. A non-parametric analysis was applied to both TAP and the separate variables to calculate their interdaily stability, intradaily variability and relative amplitude, and these values were then used for the CFI calculation. Modeling analyses were performed in order to determine TAP and CFI reliability. Each variable (T, A, P or TAP) was independently correlated with rest-activity logs kept by the volunteers. The highest correlation (r = −0.993, p<0.0001), along with highest specificity (0.870), sensitivity (0.740) and accuracy (0.904), were obtained when rest-activity records were compared to TAP. Furthermore, the CFI proved to be very sensitive to changes in circadian robustness. Our results demonstrate that the integrated TAP variable and the CFI calculation are powerful methods to assess circadian system status, improving sensitivity, specificity and accuracy in differentiating activity from rest over the analysis of wrist temperature, body position or activity alone

Blood neutrophil activation markers in severe asthma: lack of inhibition by prednisolone therapy

BACKGROUND: Neutrophils are increased in the airways and in induced sputum of severe asthma patients. We determined the expression of activation markers from circulating neutrophils in severe asthma, and their supressibility by corticosteroids. METHODS: We compared blood neutrophils from mild, moderate-to-severe and severe steroid-dependent asthma, and non-asthmatics (n = 10 each). We examined the effect of adding or increasing oral prednisolone (30 mg/day;1 week). RESULTS: Flow cytometric expression of CD35 and CD11b, but not of CD62L or CD18, was increased in severe asthma. F-met-leu-phe increased CD11b, CD35 and CD18 and decreased CD62L expression in all groups, with a greater CD35 increase in severe asthma. In severe steroid-dependent asthma, an increase in prednisolone dose had no effect on neutrophil markers particularly CD62L, but reduced CD11b and CD62L on eosinophils. Phorbol myristate acetate-stimulated oxidative burst and IL-8 release by IL-1β, lipopolysaccharide and GM-CSF in whole blood from mild but not severe asthmatics were inhibited after prednisolone. There were no differences in myeloperoxidase or neutrophil elastase release from purified neutrophils. CONCLUSION: Because blood neutrophils in severe asthma are activated and are not inhibited by oral corticosteroids, they may be important in the pathogenesis of severe asthma