Assessing the multi-scale predictive ability of ecosystem functional attributes for species distribution modelling

Global environmental changes are rapidly affecting species' distributions and habitat suitability worldwide, requiring a continuous update of biodiversity status to support effective decisions on conservation policy and management. In this regard, satellite-derived Ecosystem Functional Attributes (EFAs) offer a more integrative and quicker evaluation of ecosystem responses to environmental drivers and changes than climate and structural or compositional landscape attributes. Thus, EFAs may hold advantages as predictors in Species Distribution Models (SDMs) and for implementing multi-scale species monitoring programs. Here we describe a modelling framework to assess the predictive ability of EFAs as Essential Biodiversity Variables (EBVs) against traditional datasets (climate, land-cover) at several scales. We test the framework with a multi-scale assessment of habitat suitability for two plant species of conservation concern, both protected under the EU Habitats Directive, differing in terms of life history, range and distribution pattern (Iris boissieri and Taxus baccata). We fitted four sets of SDMs for the two test species, calibrated with: interpolated climate variables; landscape variables; EFAs; and a combination of climate and landscape variables. EFAbased models performed very well at the several scales (AUCmedian from 0.881±0.072 to 0.983±0.125), and similarly to traditional climate-based models, individually or in combination with land-cover predictors (AUCmedian from 0.882±0.059 to 0.995±0.083). Moreover, EFAbased models identified additional suitable areas and provided valuable information on functional features of habitat suitability for both test species (narrowly vs. widely distributed), for both coarse and fine scales. Our results suggest a relatively small scale-dependence of the predictive ability of satellite-derived EFAs, supporting their use as meaningful EBVs in SDMs from regional and broader scales to more local and finer scales. Since the evaluation of species' conservation status and habitat quality should as far as possible be performed based on scalable indicators linking to meaningful processes, our framework may guide conservation managers in decision-making related to biodiversity monitoring and reporting schemes.This research was developed as part of the ECOPOTENTIAL project financed by European Union's Horizon 2020 research and innovation program under grant agreement No. 641762. SAC, DAS and JPH received funding from the ECOPOTENTIAL project. JG was supported by FCT (Portuguese Science Foundation) through PhD grant SFRH/BD/90112/2012. DAS received funding from Ministerio de Educación, Cultura y Deporte, JC2015-00316 grant, and Ministerio de Ciencia e Innovación, CGL2014-61610-EXP project

Remotely Sensed Variables of Ecosystem Functioning Support Robust Predictions of Abundance Patterns for Rare Species

Global environmental changes are affecting both the distribution and abundance of species at an unprecedented rate. To assess these effects, species distribution models (SDMs) have been greatly developed over the last decades, while species abundance models (SAMs) have generally received less attention even though these models provide essential information for conservation management. With population abundance defined as an essential biodiversity variable (EBV), SAMs could offer spatially explicit predictions of species abundance across space and time. Satellite-derived ecosystem functioning attributes (EFAs) are known to inform on processes controlling species distribution, but they have not been tested as predictors of species abundance. In this study, we assessed the usefulness of SAMs calibrated with EFAs (as process-related variables) to predict local abundance patterns for a rare and threatened species (the narrow Iberian endemic ‘Gerês lily’ Iris boissieri; protected under the European Union Habitats Directive), and to project inter-annual fluctuations of predicted abundance. We compared the predictive accuracy of SAMs calibrated with climate (CLI), topography (DEM), land cover (LCC), EFAs, and combinations of these. Models fitted only with EFAs explained the greatest variance in species abundance, compared to models based only on CLI, DEM, or LCC variables. The combination of EFAs and topography slightly increased model performance. Predictions of the inter-annual dynamics of species abundance were related to inter-annual fluctuations in climate, which holds important implications for tracking global change effects on species abundance. This study underlines the potential of EFAs as robust predictors of biodiversity change through population size trends. The combination of EFA-based SAMs and SDMs would provide an essential toolkit for species monitoring programs.This work has been carried out within the H2020 project ECOPOTENTIAL: Improving Future Ecosystem Benefits Through Earth Observations (http://www.ecopotential-project.eu). The project has received funding from the European Union’s Horizon 2020 research and innovation program under grant agreement No. 641762. S.A.-C., D.A.-S., and J.H. received funding from the ECOPOTENTIAL project. A.R. was financially supported by the Xunta de Galicia, Spain (post-doctoral fellowship ED481B2016/084-0). J.F.G. was funded by the Individual Scientific Employment Stimulus Program (2017) by the Portuguese Foundation for Science and Technology (FCT CEEC-2017)

Structure of ages, sizes and growth in a local population of the Iberian wild pear (Cordoba, Spain)

Durante las últimas décadas, la notable proliferación de estudios dendrocronológicos en España ha contribuido significativamente al avance del conocimiento de la estructura y dinámica de las masas forestales. Sin embargo, las investigaciones realizadas se han centrado principalmente en especies de mayor interés forestal, en detrimento de otras que sin embargo presentan un notable interés ecológico. Un caso paradigmático es el piruétano (Pyrus bourgaeana, D), especie virtualmente desconocida desde el punto de vista ecológico, aunque tipificada como especie característica de los ecosistemas Mediterráneos. Con objeto de describir la estructura poblacional de esta especie, a través del análisis de los anillos de los árboles obtuvimos la edad y tamaño de 122 individuos con DAP > 5 cm, localizados en dos zonas adyacentes (olivar abandonado y dehesa de encinas) en Sierra Morena (Córdoba, España). La edad media de los individuos fue de ≈ 37±12 años, siendo el más longevo de 80 años, y el tamaño de los árboles fue muy variable, entre 10 y 35 cm. El diámetro del tronco no fue un buen predictor de la edad de los árboles, ya que incluso encontramos diferencias muy llamativas en la relación diámetro de tronco-edad entre árboles muy próximos. Tanto la edad como la tasa de crecimiento de los piruétanos del olivar abandonado, fueron significativamente mayores que en los árboles de la dehesa. Estas diferencias podrían estar relacionadas con la historia de manejo llevada a cabo en el área de estudio durante los últimos 50 años, ya que no existen efectos negativos denso-dependientes sobre la tasa de crecimientoIn recent decades, the remarkable proliferation of dendrochronological studies in Spain has contributed significantly to advancing knowledge of the structure and dynamics of forests. However, researches have focused mainly on forest species of greatest interest, to the detriment of other species which have a greater ecological interest. A paradigmatic case is the Iberian wild pear (Pyrus bourgaeana, D), a virtually unknown species from the ecological point of view, although classified as characteristic species of Mediterranean ecosystems. In order to describe the population structure of this species, through the tree-rings analysis we obtained the age and size of 122 individuals with DBH > 5 cm, located in two adjacent areas (abandoned olive grove and meadows of Oaks or dehesa) in Sierra Morena (Cordoba, Spain). The mean age of trees was ≈ 37±12 years, the oldest was 80, and the tree sizes were highly different, between 10 and 35 cm. Trunk diameter was not a good predictor of the tree-age, because even we found very striking differences in the age and trunk diameter relationship between closely spaced trees. Both age and growth-rates of trees in the abandoned olive grove were significantly higher than in the trees of the Dehesa. These differences could be related to the management history conducted in the study area during the last 50 years, because there are no negative density-dependent effects on growth-rate

Fagus sylvatica and Quercus pyrenaica: Two neighbors with few things in common

[EN] The Iberian Peninsula comprises one of the largest boundaries between Mediterranean and Eurosiberian vegetation, known as sub-Mediterranean zone. This ecotone hosts many unique plant species and communities and constitutes the low-latitude (warm) margin of numerous central European species which co-occur with Mediterranean vegetation. Two of the main species found in this region are the Eurosiberian European beech (Fagus sylvatica L.) and the Mediterranean Pyrenean oak (Quercus pyrenaica Willd.). It remains unclear how the different physiological and adaptive strategies of these two species reflect their niche partitioning within a sub-Mediterranean community and to what extent phenotypic variation (intraspecific variability) is driving niche partitioning across Eurosiberian and Mediterranean speciesS

Spectral Library of Plant Species from Montesinho Natural Park in Portugal

In this work, we present and describe a spectral library (SL) with 15 vascular plant species from Montesinho Natural Park (MNP), a protected area in Northeast Portugal. We selected species from the vascular plants that are characteristic of the habitats in the MNP, based on their prevalence, and also included one invasive species: Alnus glutinosa (L.) Gaertn, Castanea sativa Mill., Cistus ladanifer L., Crataegus monogyna Jacq., Frangula alnus Mill., Fraxinus angustifolia Vahl, Quercus pyrenaica Willd., Quercus rotundifolia Lam., Trifolium repens L., Arbutus unedo L., Dactylis glomerata L., Genista falcata Brot., Cytisus multiflorus (L'H & eacute;r.) Sweet, Erica arborea L., and Acacia dealbata Link. We collected spectra (300-2500 nm) from five records per leaf and leaf side, which resulted in 538 spectra compiled in the SL. Additionally, we computed five vegetation indices from spectral data and analysed them to highlight specific characteristics and differences among the sampled species. We detail the data repository information and its organisation for a better understanding of the data and to facilitate its use. The SL structure can add valuable information about the selected plant species in MNP, contributing to conservation purposes. This plant species SL is publicly available in Zenodo platform.This research was supported by Portuguese national funds through FCT—Portuguese Foundation for Science and Technology I.P., under MontObEO—Montesinho biodiversity observatory: an Earth Observation tool for biodiversity conservation (FCT: MTS/BRB/0091/2020). Cátia Rodrigues de Almeida was financially supported by Portuguese national funds through FCT—Foundation for Science and Technology I.P. (Grant: PRT/BD/153518/2021). Neftalí Sillero is supported by a CEEC2017 contract (CEECIND/02213/2017) from FCT. João C. Campos and Nuno Garcia are supported respectively by a research contract and grants from MontObEO project (MTS/BRB/0091/2020). Salvador Arenas-Castro is supported by a María Zambrano fellowship funded by the Spanish Ministry of Universities and the European Union-Next Generation Plan.info:eu-repo/semantics/publishedVersio

Model-Assisted Bird Monitoring Based on Remotely Sensed Ecosystem Functioning and Atlas Data

Urgent action needs to be taken to halt global biodiversity crisis. To be effective in the implementation of such action, managers and policy-makers need updated information on the status and trends of biodiversity. Here, we test the ability of remotely sensed ecosystem functioning attributes (EFAs) to predict the distribution of 73 bird species with different life-history traits. We run ensemble species distribution models (SDMs) trained with bird atlas data and 12 EFAs describing different dimensions of carbon cycle and surface energy balance. Our ensemble SDMs—exclusively based on EFAs—hold a high predictive capacity across 71 target species (up to 0.94 and 0.79 of Area Under the ROC curve and true skill statistic (TSS)). Our results showed the life-history traits did not significantly affect SDM performance. Overall, minimum Enhanced Vegetation Index (EVI) and maximum Albedo values (descriptors of primary productivity and energy balance) were the most important predictors across our bird community. Our approach leverages the existing atlas data and provides an alternative method to monitor inter-annual bird habitat dynamics from space in the absence of long-term biodiversity monitoring schemes. This study illustrates the great potential that satellite remote sensing can contribute to the Aichi Biodiversity Targets and to the Essential Biodiversity Variables framework (EBV class “Species distribution”)Fieldwork campaigns were carried out within the project “Estudios sobre a biodiversidade do Macizo Central Galego. Lugar de Importancia Comunitaria” (PGIDT99PXI20002B) and “Caracterización de los vertebrados del LIC Macizo Central e Bidueiral de Montederramo”, code: 2008-CE227”, funded by SAYFOR S.L. This work also received funding from Xunta de Galicia through the grant to structure and consolidate competitive research groups of Galicia (ED431B 2018/36). A.R. was funded by the Xunta de Galicia, Spain (post-doctoral fellowship ED481B2016/084-0). S.A.-C. was financially supported by PORBIOTA—E-Infraestrutura Portuguesa de Informação e Investigação em Biodiversidade (POCI-01-0145-FEDER-022127)S

Combining Satellite Remote Sensing and Climate Data in Species Distribution Models to Improve the Conservation of Iberian White Oaks (Quercus L.)

The Iberian Peninsula hosts a high diversity of oak species, being a hot-spot for the conservation of European White Oaks (Quercus) due to their environmental heterogeneity and its critical role as a phylogeographic refugium. Identifying and ranking the drivers that shape the distribution of White Oaks in Iberia requires that environmental variables operating at distinct scales are considered. These include climate, but also ecosystem functioning attributes (EFAs) related to energy–matter exchanges that characterize land cover types under various environmental settings, at finer scales. Here, we used satellite-based EFAs and climate variables in species distribution models (SDMs) to assess how variables related to ecosystem functioning improve our understanding of current distributions and the identification of suitable areas for White Oak species in Iberia. We developed consensus ensemble SDMs targeting a set of thirteen oaks, including both narrow endemic and widespread taxa. Models combining EFAs and climate variables obtained a higher performance and predictive ability (true-skill statistic (TSS): 0.88, sensitivity: 99.6, specificity: 96.3), in comparison to the climate-only models (TSS: 0.86, sens.: 96.1, spec.: 90.3) and EFA-only models (TSS: 0.73, sens.: 91.2, spec.: 82.1). Overall, narrow endemic species obtained higher predictive performance using combined models (TSS: 0.96, sens.: 99.6, spec.: 96.3) in comparison to widespread oaks (TSS: 0.80, sens.: 92.6, spec.: 87.7). The Iberian White Oaks show a high dependence on precipitation and the inter-quartile range of Normalized Difference Water Index (NDWI) (i.e., seasonal water availability) which appears to be the most important EFA variable. Spatial projections of climate–EFA combined models contribute to identify the major diversity hotspots for White Oaks in Iberia, holding higher values of cumulative habitat suitability and species richness. We discuss the implications of these findings for guiding the long-term conservation of Iberian White Oaks and provide spatially explicit geospatial information about each oak species (or set of species) relevant for developing biogeographic conservation frameworks.</jats:p

Famílies botàniques de plantes medicinals

Facultat de Farmàcia, Universitat de Barcelona. Ensenyament: Grau de Farmàcia, Assignatura: Botànica Farmacèutica, Curs: 2013-2014, Coordinadors: Joan Simon, Cèsar Blanché i Maria Bosch.Els materials que aquí es presenten són els recull de 175 treballs d’una família botànica d’interès medicinal realitzats de manera individual. Els treballs han estat realitzat per la totalitat dels estudiants dels grups M-2 i M-3 de l’assignatura Botànica Farmacèutica durant els mesos d’abril i maig del curs 2013-14. Tots els treballs s’han dut a terme a través de la plataforma de GoogleDocs i han estat tutoritzats pel professor de l’assignatura i revisats i finalment co-avaluats entre els propis estudiants. L’objectiu principal de l’activitat ha estat fomentar l’aprenentatge autònom i col·laboratiu en Botànica farmacèutica