Low-volume intraplate volcanism in the Early/Middle Jurassic Pacific basin documented by accreted sequences in Costa Rica

Countless seamounts occur on Earth that can provide important constraints on intraplate volcanism and plate tectonics in the oceans, yet their nature and origin remain poorly known due to difficulties in investigating the deep ocean. We present here new lithostratigraphic, age and geochemical data from Lower/Middle Jurassic and Lower Cretaceous sequences in the Santa Rosa accretionary complex, Costa Rica, which offer a valuable opportunity to study a small-sized seamount from a subducted plate segment of the Pacific basin. The seamount is characterized by very unusual lithostratigraphic sequences with sills of potassic alkaline basalt emplaced within thick beds of radiolarite, basaltic breccia and hyaloclastite. An integration of new geochemical, biochronological and geochronological data with lithostratigraphic observations suggests that the seamount formed ~175 Ma ago on thick oceanic crust away from subduction zones and mid-ocean ridges. This seamount travelled ~65 Ma in the Pacific before accretion. It resembles lithologically and compositionally “petit-spot” volcanoes found off Japan, which form in response to plate flexure near subduction zones. Also, the composition of the sills and lava flows in the accreted seamount closely resembles that of potassic alkaline basalts produced by lithosphere cracking along the Line Islands chain. We hypothesize based on these observations, petrological constraints and formation of the accreted seamount coeval with the early stages of development of the Pacific plate that the seamount formed by extraction of small volumes of melt from the base of the lithosphere in response to propagating fractures at the scale of the Pacific basin

A record of spontaneous subduction initiation in the Izu–Bonin–Mariana arc

The initiation of tectonic plate subduction into the mantle is poorly understood. If subduction is induced by the push of a distant mid-ocean ridge or subducted slab pull, we expect compression and uplift of the overriding plate. In contrast, spontaneous subduction initiation, driven by subsidence of dense lithosphere along faults adjacent to buoyant lithosphere, would result in extension and magmatism. The rock record of subduction initiation is typically obscured by younger deposits, so evaluating these possibilities has proved elusive. Here we analyse the geochemical characteristics of igneous basement rocks and overlying sediments, sampled from the Amami Sankaku Basin in the northwest Philippine Sea. The uppermost basement rocks are areally widespread and supplied via dykes. They are similar in composition and age—as constrained by the biostratigraphy of the overlying sediments—to the 52–48-million-year-old basalts in the adjacent Izu–Bonin–Mariana fore-arc. The geochemical characteristics of the basement lavas indicate that a component of subducted lithosphere was involved in their genesis, and the lavas were derived from mantle source rocks that were more melt-depleted than those tapped at mid-ocean ridges. We propose that the basement lavas formed during the inception of Izu–Bonin–Mariana subduction in a mode consistent with the spontaneous initiation of subduction

Genetic mechanisms of critical illness in COVID-19.

Host-mediated lung inflammation is present1, and drives mortality2, in the critical illness caused by coronavirus disease 2019 (COVID-19). Host genetic variants associated with critical illness may identify mechanistic targets for therapeutic development3. Here we report the results of the GenOMICC (Genetics Of Mortality In Critical Care) genome-wide association study in 2,244 critically ill patients with COVID-19 from 208 UK intensive care units. We have identified and replicated the following new genome-wide significant associations: on chromosome 12q24.13 (rs10735079, P = 1.65 × 10-8) in a gene cluster that encodes antiviral restriction enzyme activators (OAS1, OAS2 and OAS3); on chromosome 19p13.2 (rs74956615, P = 2.3 × 10-8) near the gene that encodes tyrosine kinase 2 (TYK2); on chromosome 19p13.3 (rs2109069, P = 3.98 ×  10-12) within the gene that encodes dipeptidyl peptidase 9 (DPP9); and on chromosome 21q22.1 (rs2236757, P = 4.99 × 10-8) in the interferon receptor gene IFNAR2. We identified potential targets for repurposing of licensed medications: using Mendelian randomization, we found evidence that low expression of IFNAR2, or high expression of TYK2, are associated with life-threatening disease; and transcriptome-wide association in lung tissue revealed that high expression of the monocyte-macrophage chemotactic receptor CCR2 is associated with severe COVID-19. Our results identify robust genetic signals relating to key host antiviral defence mechanisms and mediators of inflammatory organ damage in COVID-19. Both mechanisms may be amenable to targeted treatment with existing drugs. However, large-scale randomized clinical trials will be essential before any change to clinical practice

SARS-CoV-2 susceptibility and COVID-19 disease severity are associated with genetic variants affecting gene expression in a variety of tissues

Variability in SARS-CoV-2 susceptibility and COVID-19 disease severity between individuals is partly due to genetic factors. Here, we identify 4 genomic loci with suggestive associations for SARS-CoV-2 susceptibility and 19 for COVID-19 disease severity. Four of these 23 loci likely have an ethnicity-specific component. Genome-wide association study (GWAS) signals in 11 loci colocalize with expression quantitative trait loci (eQTLs) associated with the expression of 20 genes in 62 tissues/cell types (range: 1:43 tissues/gene), including lung, brain, heart, muscle, and skin as well as the digestive system and immune system. We perform genetic fine mapping to compute 99% credible SNP sets, which identify 10 GWAS loci that have eight or fewer SNPs in the credible set, including three loci with one single likely causal SNP. Our study suggests that the diverse symptoms and disease severity of COVID-19 observed between individuals is associated with variants across the genome, affecting gene expression levels in a wide variety of tissue types

A first update on mapping the human genetic architecture of COVID-19

peer reviewe

Upper Cretaceous to Miocene tectonostratigraphy of the Azuero area (Panama) and the discontinuous accretion and subduction erosion along the Middle American margin

The Central American forearc allows insight into the long-term evolution of the Middle American margin and possible shifts between accretionary and erosive periods of subduction. We present a revised tectonostratigraphic subdivision of the Azuero area based on new field observations and biochronologic data, and a synthesis of previous age, geochemical and stratigraphic data. The basement of the area is composed of an autochtonous oceanic plateau, the early Central American arc and accreted seamounts, which are unconformably overlain by forearc sediments. The nature and spatial arrangement of basement units combined with patterns of uplift and subsidence recorded in overlapping sediments allow reconstruction of the local evolution of subduction tectonics between the Upper Cretaceous and Miocene. Comparison of this evolution with that formerly proposed for the south Costa Rican margin based on a similar approach (Buchs et al., 2009, 2010) provides an insight into temporal and along-strike changes of subduction tectonics along a ~ 500 km-long segment of the Middle American margin. We find that subduction erosion (or non-accretion), punctuated by seamount accretion, was the dominant process along the margin between the late Campanian and Middle Eocene. In the Middle Eocene, uplift of the Central American forearc, initiation of a volcanic front retreat in Panama and a pulse of seamount accretion between south Costa Rica and west Panama are likely to relate to a reorganization of plate tectonics in the Pacific. A contrasted evolution occurred in south Costa Rica and Panama afterwards, with continued subduction erosion in the Azuero area and net accretion of olistostromal and hemipelagic sediments in south Costa Rica at least until the Middle Miocene. Our results show that tectononstratigraphic observations in the forearc may represent a valuable complement to offshore drilling and geophysical studies to understand modern subduction tectonics along the Middle American margin

Sedimentary and volcanic record of the nascent Izu-Bonin-Mariana arc from IODP Site U1438

The oldest known, intact sedimentary record of a nascent intraoceanic arc was recovered in a ∼100-m-thick unit (IV) above ca. 49 Ma basaltic basement at International Ocean Discovery Program Site U1438 in the Amami Sankaku Basin. During deposition of Unit IV the site was located ∼250 km from the plate edge, where Izu-Bonin-Mariana subduction initiated at 52 Ma. Basement basalts are overlain by a mudstone-dominated subunit (IVC) with a thin basal layer of dark brown metalliferous mudstone followed by mudstone with sparse, graded laminae of amphibole- and biotite-bearing tuffaceous sandstone and siltstone. Amphibole and zircon ages from these laminae suggest that the intermediate subduction-related magmatism that sourced them initiated at ca. 47 Ma soon after basement formation. Overlying volcaniclastic, sandy, gravity-flow deposits (subunit IVB) have a different provenance; shallow water fauna and tachylitic glass fragments indicate a source volcanic edifice that rose above the carbonate compensation depth and may have been emergent. Basaltic andesite intervals in upper subunit IVB have textures suggesting emplacement as intrusions into unconsolidated sediment on a volcanic center with geochemical and petrological characteristics of mafic, differentiated island arc magmatism. Distinctive Hf-Nd isotope characteristics similar to the least-radiogenic Izu-Bonin-Mariana boninites support a relatively old age for the basaltic andesites similar to detrital amphibole dated at 47 Ma. The absence of boninites at that time may have resulted from the position of Site U1438 at a greater distance from the plate edge. The upper interval of mudstone with tuffaceous beds (subunit IVA) progresses upsection into Unit III, part of a wedge of sediment fed by growing arc-axis volcanoes to the east. At Site U1438, in what was to become a reararc position, the succession of early extensional basaltic magmatism associated with spontaneous subduction initiation is followed by a rapid transition into potentially widespread subduction-related magmatism and sedimentation prior to the onset of focused magmatism and major arc building

Reply to 'Unclear causes for subduction'

Arculus et al. reply — Keenan and Encarnación suggest that the absence of pre-subduction inception basement in the drill core data taken from site U1438 raises ambiguity in our conclusion of spontaneous subduction initiation in the Izu–Bonin–Mariana system

Aalenian to Cenomanian Radiolaria of the Bermeja Complex (Puerto Rico) and Pacific origin of radiolarites on the Caribbean Plate

The study of the radiolarian ribbon chert is a key in determining the origins of associated Mesozoic oceanic terranes and may help to achieve a general agreement regarding the basic principles on the evolution of the Caribbean Plate. The Bermeja Complex of Puerto Rico, which contains serpentinized peridotite, altered basalt, amphibolite, and chert (Mariquita Chert Formation), is one of these crucial oceanic terranes. The radiolarian biochronology presented in this work is mainly based by correlation on the biozonations of Baumgartner et al. (1995) and O'Dogherty (1994) and indicates an early Middle Jurassic to early Late Cretaceous (late Bajocian-early Callovian to late early Albian-early middle Cenomanian) age. The illustrated assemblages contain about 120 species, of which one is new (Pantanellium karinae), and belonging to about 50 genera. A review of the previous radiolarian published works on the Mariquita Chert Formation and the results of this study suggest that this formation ranges in age from Middle Jurassic to early Late Cretaceous (late Aalenian to early-middle Cenomanian) and also reveal a possible feature of the Bermeja Complex, which is the younging of radiolarian cherts from north to south, evoking a polarity of accretion. On the basis of a currently exhaustive inventory of the radiolarite facies s.s. on the Caribbean Plate, a re-examination of the regional distribution of Middle Jurassic sediments associated with oceanic crust, and a paleoceanographic argumentation on the water currents, we come to the conclusion that the radiolarite and associated Mesozoic oceanic terranes of the Caribbean Plate are of Pacific origin. Eventually, a discussion on the origin of the cherts of the Mariquita Formation illustrated by Middle Jurassic to middle Cretaceous geodynamic models of the Pacific and Caribbean realms bring up the possibility that the rocks of the Bermeja Complex are remnants of two different oceans