Phase transitions in the early and the present Universe

The evolution of the Universe is the ultimate laboratory to study fundamental physics across energy scales that span about 25 orders of magnitude: from the grand unification scale through particle and nuclear physics scales down to the scale of atomic physics. The standard models of cosmology and particle physics provide the basic understanding of the early and present Universe and predict a series of phase transitions that occurred in succession during the expansion and cooling history of the Universe. We survey these phase transitions, highlighting the equilibrium and non-equilibrium effects as well as their observational and cosmological consequences. We discuss the current theoretical and experimental programs to study phase transitions in QCD and nuclear matter in accelerators along with the new results on novel states of matter as well as on multi- fragmentation in nuclear matter. A critical assessment of similarities and differences between the conditions in the early universe and those in ultra- relativistic heavy ion collisions is presented. Cosmological observations and accelerator experiments are converging towards an unprecedented understanding of the early and present Universe.Comment: 41 pages, 16 figures, to appear in Ann. Rev. Nucl. Part. Sci 2006. Presentation improved, references adde

The moment of truth for WIMP Dark Matter

We know that dark matter constitutes 85% of all the matter in the Universe, but we do not know of what it is made. Amongst the many Dark Matter candidates proposed, WIMPs (weakly interacting massive particles) occupy a special place, as they arise naturally from well motivated extensions of the standard model of particle physics. With the advent of the Large Hadron Collider at CERN, and a new generation of astroparticle experiments, the moment of truth has come for WIMPs: either we will discover them in the next five to ten years, or we will witness the inevitable decline of WIMP paradigm.Comment: To appear in Nature (Nov 18, 2010

Stationary Black Holes: Uniqueness and Beyond

The spectrum of known black-hole solutions to the stationary Einstein equations has been steadily increasing, sometimes in unexpected ways. In particular, it has turned out that not all black-hole-equilibrium configurations are characterized by their mass, angular momentum and global charges. Moreover, the high degree of symmetry displayed by vacuum and electro-vacuum black-hole spacetimes ceases to exist in self-gravitating non-linear field theories. This text aims to review some developments in the subject and to discuss them in light of the uniqueness theorem for the Einstein-Maxwell system.Comment: Major update of the original version by Markus Heusler from 1998. Piotr T. Chru\'sciel and Jo\~ao Lopes Costa succeeded to this review's authorship. Significantly restructured and updated all sections; changes are too numerous to be usefully described here. The number of references increased from 186 to 32

A Review of Supervised Machine Learning Applied to Ageing Research

Broadly speaking, supervised machine learning is the computational task of learning correlations between variables in annotated data (the training set), and using this information to create a predictive model capable of inferring annotations for new data, whose annotations are not known. Ageing is a complex process that affects nearly all animal species. This process can be studied at several levels of abstraction, in different organisms and with different objectives in mind. Not surprisingly, the diversity of the supervised machine learning algorithms applied to answer biological questions reflects the complexities of the underlying ageing processes being studied. Many works using supervised machine learning to study the ageing process have been recently published, so it is timely to review these works, to discuss their main findings and weaknesses. In summary, the main findings of the reviewed papers are: the link between specific types of DNA repair and ageing, ageing-related proteins tend to be highly connected and seem to play a central role in molecular pathways; ageing/longevity is linked with autophagy and apoptosis, nutrient receptor genes, and copper and iron ion transport. Additionally, several biomarkers of ageing were found by machine learning. Despite some interesting machine learning results, we also identified a weakness of current works on this topic: only one of the reviewed papers has corroborated the computational results of machine learning algorithms through wet-lab experiments. In conclusion, supervised machine learning has contributed to advance our knowledge and has provided novel insights on ageing, yet future work should have a greater emphasis in validating the predictions

Nuclear Scaffold Attachment Sites within ENCODE Regions Associate with Actively Transcribed Genes

The human genome must be packaged and organized in a functional manner for the regulation of DNA replication and transcription. The nuclear scaffold/matrix, consisting of structural and functional nuclear proteins, remains after extraction of nuclei and anchors loops of DNA. In the search for cis-elements functioning as chromatin domain boundaries, we identified 453 nuclear scaffold attachment sites purified by lithium-3,5-iodosalicylate extraction of HeLa nuclei across 30 Mb of the human genome studied by the ENCODE pilot project. The scaffold attachment sites mapped predominately near expressed genes and localized near transcription start sites and the ends of genes but not to boundary elements. In addition, these regions were enriched for RNA polymerase II and transcription factor binding sites and were located in early replicating regions of the genome. We believe these sites correspond to genome-interactions mediated by transcription factors and transcriptional machinery immobilized on a nuclear substructure

Higgs field in cosmology

The accelerated expansion of the early universe is an integral part of modern cosmology and dynamically realized by the mechanism of inflation. The simplest theoretical description of the inflationary paradigm is based on the assumption of an additional propagating scalar degree of freedom which drives inflation - the inflaton. In most models of inflation the fundamental nature of the inflaton remains unexplained. In the model of Higgs inflation, the inflaton is identified with the Standard Model Higgs boson and connects cosmology with elementary particle physics. A characteristic feature of this model is a non-minimal coupling of the Higgs boson to gravity. I review and discuss several phenomenological and fundamental aspects of this model, including the impact of quantum corrections and the renormalization group, the derivation of initial conditions for Higgs inflation in a quantum cosmological framework and the classical and quantum equivalence of different field parametrizations.Comment: 36 pages, 9 figures; references added, typos corrected. Invited contribution to the Heraeus-Seminar "Hundred Years of Gauge Theory", 30 July - 3 August 2018, Physikzentrum Bad Honnef, organized by Silvia De Bianchi and Claus Kiefer. To appear in the proceedings "100 Years of Gauge Theory. Past, present and future perspectives" in the series `Fundamental Theories of Physics' (Springer

QCD and strongly coupled gauge theories : challenges and perspectives

We highlight the progress, current status, and open challenges of QCD-driven physics, in theory and in experiment. We discuss how the strong interaction is intimately connected to a broad sweep of physical problems, in settings ranging from astrophysics and cosmology to strongly coupled, complex systems in particle and condensed-matter physics, as well as to searches for physics beyond the Standard Model. We also discuss how success in describing the strong interaction impacts other fields, and, in turn, how such subjects can impact studies of the strong interaction. In the course of the work we offer a perspective on the many research streams which flow into and out of QCD, as well as a vision for future developments.Peer reviewe