GWAS for Systemic Sclerosis Identifies Multiple Risk Loci and Highlights Fibrotic and Vasculopathy Pathways

Systemic sclerosis (SSc) is an autoimmune disease that shows one of the highest mortality rates among rheumatic diseases. We perform a large genome-wide association study (GWAS), and meta-analysis with previous GWASs, in 26,679 individuals and identify 27 independent genome-wide associated signals, including 13 new risk loci. The novel associations nearly double the number of genome-wide hits reported for SSc thus far. We define 95% credible sets of less than 5 likely causal variants in 12 loci. Additionally, we identify specific SSc subtype-associated signals. Functional analysis of high-priority variants shows the potential function of SSc signals, with the identification of 43 robust target genes through HiChIP. Our results point towards molecular pathways potentially involved in vasculopathy and fibrosis, two main hallmarks in SSc, and highlight the spectrum of critical cell types for the disease. This work supports a better understanding of the genetic basis of SSc and provides directions for future functional experiments.Funding: This work was supported by Spanish Ministry of Economy and Competitiveness (grant ref. SAF2015-66761-P), Consejeria de Innovacion, Ciencia y Tecnologia, Junta de Andalucía (P12-BIO-1395), Ministerio de Educación, Cultura y Deporte through the program FPU, Juan de la Cierva fellowship (FJCI-2015-24028), Red de Investigación en Inflamación y Enfermadades Reumaticas (RIER) from Instituto de Salud Carlos III (RD16/0012/0013), and Scleroderma Research Foundation and NIH P50-HG007735 (to H.Y.C.). H.Y.C. is an Investigator of the Howard Hughes Medical Institute. PopGen 2.0 is supported by a grant from the German Ministry for Education and Research (01EY1103). M.D.M and S.A. are supported by grant DoD W81XWH-18-1-0423 and DoD W81XWH-16-1-0296, respectively

Complement component C4 structural variation and quantitative traits contribute to sex-biased vulnerability in systemic sclerosis

Altres ajuts: Fondo Europeo de Desarrollo Regional (FEDER), "A way of making Europe".Copy number (CN) polymorphisms of complement C4 play distinct roles in many conditions, including immune-mediated diseases. We investigated the association of C4 CN with systemic sclerosis (SSc) risk. Imputed total C4, C4A, C4B, and HERV-K CN were analyzed in 26,633 individuals and validated in an independent cohort. Our results showed that higher C4 CN confers protection to SSc, and deviations from CN parity of C4A and C4B augmented risk. The protection contributed per copy of C4A and C4B differed by sex. Stronger protection was afforded by C4A in men and by C4B in women. C4 CN correlated well with its gene expression and serum protein levels, and less C4 was detected for both in SSc patients. Conditioned analysis suggests that C4 genetics strongly contributes to the SSc association within the major histocompatibility complex locus and highlights classical alleles and amino acid variants of HLA-DRB1 and HLA-DPB1 as C4-independent signals

RICORS2040 : The need for collaborative research in chronic kidney disease

Chronic kidney disease (CKD) is a silent and poorly known killer. The current concept of CKD is relatively young and uptake by the public, physicians and health authorities is not widespread. Physicians still confuse CKD with chronic kidney insufficiency or failure. For the wider public and health authorities, CKD evokes kidney replacement therapy (KRT). In Spain, the prevalence of KRT is 0.13%. Thus health authorities may consider CKD a non-issue: very few persons eventually need KRT and, for those in whom kidneys fail, the problem is 'solved' by dialysis or kidney transplantation. However, KRT is the tip of the iceberg in the burden of CKD. The main burden of CKD is accelerated ageing and premature death. The cut-off points for kidney function and kidney damage indexes that define CKD also mark an increased risk for all-cause premature death. CKD is the most prevalent risk factor for lethal coronavirus disease 2019 (COVID-19) and the factor that most increases the risk of death in COVID-19, after old age. Men and women undergoing KRT still have an annual mortality that is 10- to 100-fold higher than similar-age peers, and life expectancy is shortened by ~40 years for young persons on dialysis and by 15 years for young persons with a functioning kidney graft. CKD is expected to become the fifth greatest global cause of death by 2040 and the second greatest cause of death in Spain before the end of the century, a time when one in four Spaniards will have CKD. However, by 2022, CKD will become the only top-15 global predicted cause of death that is not supported by a dedicated well-funded Centres for Biomedical Research (CIBER) network structure in Spain. Realizing the underestimation of the CKD burden of disease by health authorities, the Decade of the Kidney initiative for 2020-2030 was launched by the American Association of Kidney Patients and the European Kidney Health Alliance. Leading Spanish kidney researchers grouped in the kidney collaborative research network Red de Investigación Renal have now applied for the Redes de Investigación Cooperativa Orientadas a Resultados en Salud (RICORS) call for collaborative research in Spain with the support of the Spanish Society of Nephrology, Federación Nacional de Asociaciones para la Lucha Contra las Enfermedades del Riñón and ONT: RICORS2040 aims to prevent the dire predictions for the global 2040 burden of CKD from becoming true

New insights into the genetic etiology of Alzheimer's disease and related dementias

Characterization of the genetic landscape of Alzheimer's disease (AD) and related dementias (ADD) provides a unique opportunity for a better understanding of the associated pathophysiological processes. We performed a two-stage genome-wide association study totaling 111,326 clinically diagnosed/'proxy' AD cases and 677,663 controls. We found 75 risk loci, of which 42 were new at the time of analysis. Pathway enrichment analyses confirmed the involvement of amyloid/tau pathways and highlighted microglia implication. Gene prioritization in the new loci identified 31 genes that were suggestive of new genetically associated processes, including the tumor necrosis factor alpha pathway through the linear ubiquitin chain assembly complex. We also built a new genetic risk score associated with the risk of future AD/dementia or progression from mild cognitive impairment to AD/dementia. The improvement in prediction led to a 1.6- to 1.9-fold increase in AD risk from the lowest to the highest decile, in addition to effects of age and the APOE ε4 allele

A cross-disease meta-GWAS identifies four new susceptibility loci shared between systemic sclerosis and Crohn’s disease

Abstract: Genome-wide association studies (GWASs) have identified a number of genetic risk loci associated with systemic sclerosis (SSc) and Crohn’s disease (CD), some of which confer susceptibility to both diseases. In order to identify new risk loci shared between these two immune-mediated disorders, we performed a cross-disease meta-analysis including GWAS data from 5,734 SSc patients, 4,588 CD patients and 14,568 controls of European origin. We identified 4 new loci shared between SSc and CD, IL12RB2, IRF1/SLC22A5, STAT3 and an intergenic locus at 6p21.31. Pleiotropic variants within these loci showed opposite allelic effects in the two analysed diseases and all of them showed a significant effect on gene expression. In addition, an enrichment in the IL-12 family and type I interferon signaling pathways was observed among the set of SSc-CD common genetic risk loci. In conclusion, through the first cross-disease meta-analysis of SSc and CD, we identified genetic variants with pleiotropic effects on two clinically distinct immune-mediated disorders. The fact that all these pleiotropic SNPs have opposite allelic effects in SSc and CD reveals the complexity of the molecular mechanisms by which polymorphisms affect diseases

TRANSPORTE DE SÓLIDOS EN FLUJO ANULAR VERTICAL NO-NEWTONIANO DE SOLUCIONES DE BIOPOLÍMEROS / Transport of Solids in a Non-Newtonian Annular Vertical Flow of Biopolymer Solutions

El siguiente trabajo presenta un estudio experimental de la suspensión de sólidos en flujo anular vertical, usando solucionesno-newtonianas de biopolímeros como fase líquida. Los biopolímeros empleados fueron goma xantano y goma guar, y lafase sólida consistió en arena de sílice con un diámetro promedio particular de 250 μm. El equipo experimental es unsistema de tubos concéntricos con 3 m de altura y un diámetro hidráulico de 0,15 m, que simulan el proceso de perforaciónde pozos a temperatura ambiente y sin el efecto de la rotación de la mecha. Las variables estudiadas más importantesfueron la velocidad anular, la concentración de carga y de polímero. Se obtuvo que la relación de transporte permite unacuantificación simple del efecto del polímero como un aditivo viscosificante en lodos de perforación, independientementede la concentración de carga utilizada. La goma xantano provee una mejor capacidad de suspensión que la goma guar aconcentraciones similares, especialmente a bajas velocidades de flujo, mientras que a altas velocidades el transporte desólidos es similar para soluciones de ambos polímeros, debido a la pseudoplasticidad de las mismas.ABSTRACTThis work presents an experimental study of solids suspension in upward annular flow using non-Newtonian biopolymersolutions as liquid phases. The biopolymers employed were xanthan and guar gums, and the solid phase consisted of silicasand with a mean particle size of 250 μm. The experimental equipment is a vertical concentric pipe system, with 3 m ofheight and a hydraulic diameter of 0.15 m, simulating the drilling process at room temperature without the drill rotationeffects. The annular velocity, concentration of load and polymer were the most important variables studied. It was foundthat the transport ratio allows a simple quantification of the effects of the polymer as a viscosifying additive in drillingmuds, independently of the solids loading. xanthan gum provides a better suspension capacity than Guar gum at similarconcentrations, especially at low flow velocities, while at high velocities the solids transport is similar for both polymericsolutions, due to their pseudoplasticity.Keywords: Non-Newtonian fluid; liquid–solid flow; annular flow; guar gum; xanthan gum

Schulsoftware: Analytische Geometrie. Version 3.2

With diskette 3 1/2''Copy held by FIZ Karlsruhe / FIZ - Fachinformationszzentrum Karlsruhe / TIB - Technische InformationsbibliothekSIGLEDEGerman

Dark matter from a radiative inverse seesaw majoron model

We propose a Majoron-like extension of the Standard Model with an extra global U(1)X-symmetry where neutrino masses are generated through an inverse seesaw mechanism at the 1-loop level. In contrast to the tree-level inverse seesaw, our framework contains dark matter (DM) candidates stabilized by a residual Z2-symmetry surviving spontaneous breaking of the U(1)X-group. We explore the case in which the DM is a Majorana fermion. Furthermore, we provide parameter space regions allowed by current experimental constraints coming from the dark matter relic abundance, (in)direct detection, and charged lepton flavor violation

Shear rheology of anionic and zwitterionic modified polyacrylamides

cited By 10International audienceTwo groups of copolymers were synthesized from high molecular weight polyacrylamides. One group of copolymers consisted of sulfonated, anionic copolymers (PAM-S) of acrylamide with the sodium salt of 2-acryloamido-2-methyl-1-propane sulfonic acid, and the other consisted of zwitterionic copolymers (PAM-Z) of acrylamide with a sulfobetaine methacrylate monomer. The shear rheology of aqueous solutions of the copolymers and their mixtures was studied experimentally. Solutions of both copolymers exhibit shear thinning behavior in the range of concentrations explored. Solutions of mixtures of two copolymers (PAM-Z and PAM-S) exhibited a slight viscosity synergy at high relative contents of PAM-S. Addition of a relatively high concentration of an electrolyte (0.3. M NaCl) induces decreases in viscosity due to coil contraction and eliminates the synergy of the mixtures. Mixtures of the zwitterionic copolymer and a cationic surfactant, cetyl trimethylammonium p-toluene sulfonate (CTAT), were also studied. These solutions exhibit a strong synergistic effect at low-shear rates when the surfactant forms wormlike micelles. In addition, oscillatory shear measurements demonstrate that PAM-Z/CTAT mixtures are significantly more elastic than CTAT solutions, which indicates that PAM-Z is effective in promoting micelle entanglements, as reflected by the increase in relaxation time with PAM-Z content