121 research outputs found
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The potential of speleothems from Western Europe as recorders of regional climate: a critical assessment of the SISAL database
Western Europe is the region with the highest density of published speleothem δ18O (δ18Ospel) records worldwide. Here, we review these records in light of the recent publication of the Speleothem Isotopes Synthesis and AnaLysis (SISAL) database. We investigate how representative the spatial and temporal distribution of the available records is for climate in Western Europe and review potential sites and strategies for future studies. We show that spatial trends in precipitation δ18O are mirrored in the speleothems, providing means to better constrain the factors influencing δ18Ospel at a specific location. Coherent regional δ18Ospel trends are found over stadial-interstadial transitions of the last glacial, especially in high altitude Alpine records, where this has been attributed to a strong temperature control of δ18Ospel. During the Holocene, regional trends are less clearly expressed, due to lower signal-to-noise ratios in δ18Ospel, but can potentially be extracted with the use of statistical methods. This first assessment highlights the potential of the European region for speleothem palaeoclimate reconstruction, while underpinning the importance of knowing local factors for a correct interpretation of δ18Ospel
Exploring out-of-equilibrium quantum magnetism and thermalization in a spin-3 many-body dipolar lattice system
Understanding quantum thermalization through entanglement build-up in
isolated quantum systems addresses fundamental questions on how unitary
dynamics connects to statistical physics. Here, we study the spin dynamics and
approach towards local thermal equilibrium of a macroscopic ensemble of S = 3
spins prepared in a pure coherent spin state, tilted compared to the magnetic
field, under the effect of magnetic dipole-dipole interactions. The experiment
uses a unit filled array of 104 chromium atoms in a three dimensional optical
lattice, realizing the spin-3 XXZ Heisenberg model. The buildup of quantum
correlation during the dynamics, especially as the angle approaches pi/2, is
supported by comparison with an improved numerical quantum phase-space method
and further confirmed by the observation that our isolated system thermalizes
under its own dynamics, reaching a steady state consistent with the one
extracted from a thermal ensemble with a temperature dictated from the system's
energy. This indicates a scenario of quantum thermalization which is tied to
the growth of entanglement entropy. Although direct experimental measurements
of the Renyi entropy in our macroscopic system are unfeasible, the excellent
agreement with the theory, which can compute this entropy, does indicate
entanglement build-up.Comment: 12 figure
Experimental Quantum Hamiltonian Learning
Efficiently characterising quantum systems, verifying operations of quantum
devices and validating underpinning physical models, are central challenges for
the development of quantum technologies and for our continued understanding of
foundational physics. Machine-learning enhanced by quantum simulators has been
proposed as a route to improve the computational cost of performing these
studies. Here we interface two different quantum systems through a classical
channel - a silicon-photonics quantum simulator and an electron spin in a
diamond nitrogen-vacancy centre - and use the former to learn the latter's
Hamiltonian via Bayesian inference. We learn the salient Hamiltonian parameter
with an uncertainty of approximately . Furthermore, an observed
saturation in the learning algorithm suggests deficiencies in the underlying
Hamiltonian model, which we exploit to further improve the model itself. We go
on to implement an interactive version of the protocol and experimentally show
its ability to characterise the operation of the quantum photonic device. This
work demonstrates powerful new quantum-enhanced techniques for investigating
foundational physical models and characterising quantum technologies
Comparison of gene expression profiles in core biopsies and corresponding surgical breast cancer samples
INTRODUCTION: Gene expression profiling has been successfully used to classify breast cancer into clinically distinct subtypes, and to predict the risk of recurrence and treatment response. The aim of this study was to investigate whether the gene expression profile (GEP) detected in a core biopsy (CB) is representative for the entire tumor, since CB is an important tool in breast cancer diagnosis. Moreover, we investigated whether performing CBs prior to the surgical excision could influence the GEP of the respective tumor. METHODS: We quantified the RNA expression of 60 relevant genes by quantitative real-time PCR in paired CBs and surgical specimens from 22 untreated primary breast cancer patients. Subsequently, expression data were compared with independent GEPs obtained from tumors of 317 patients without preceding CB. RESULTS: In 82% of the cases the GEP detected in the CB correlated very well with the corresponding profile in the surgical sample (r(s )≥ 0.95, p < 0.001). Gene-by-gene analysis revealed four genes significantly elevated in the surgical sample compared to the CB; these comprised genes mainly involved in inflammation and the wound repair process as well as in tumor invasion and metastasis. CONCLUSION: A GEP detected in a CB are representative for the entire tumor and is, therefore, of clinical relevance. The observed alterations of individual genes after performance of CB deserve attention since they might impact the clinical interpretation with respect to prognosis and therapy prediction of the GEP as detected in the surgical specimen following CB performance
Pollen-inferred regional vegetation patterns and demographic change in Southern Anatolia through the Holocene
Southern Anatolia is a highly significant area within the Mediterranean, particularly in terms of understanding how agriculture moved into Europe from neighbouring regions. This study uses pollen, palaeoclimate and archaeological evidence to investigate the relationships between demography and vegetation change, and to explore how the development of agriculture varied spatially. Data from 21 fossil pollen records have been transformed into forested, parkland and open vegetation types using cluster analysis. Patterns of change have been explored using non-metric multidimensional scaling (nMDS) and through analysis of indicator groups, such as an Anthropogenic Pollen Index, and Simpson’s Diversity. Settlement data, which indicate population densities, and summed radiocarbon dates for archaeological sites have been used as a proxy for demographic change. The pollen and archaeological records confirm that farming can be detected earlier in Anatolia in comparison with many other parts of the Mediterranean. Dynamics of change in grazing indicators and the OJCV (Olea, Juglans, Castanea and Vitis) index for cultivated trees appear to match cycles of population expansion and decline. Vegetation and land use change is also influenced by other factors, such as climate change. Investigating the early impacts of anthropogenic activities (e.g. woodcutting, animal herding, the use of fire and agriculture) is key to understanding how societies have modified the environment since the mid–late Holocene, despite the capacity of ecological systems to absorb recurrent disturbances. The results of this study suggest that shifting human population dynamics played an important role in shaping land cover in central and southern Anatolia
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SISALv2: A comprehensive speleothem isotope database with multiple age-depth models
Characterizing the temporal uncertainty in palaeoclimate records is crucial for analysing past climate change, correlating climate events between records, assessing climate periodicities, identifying potential triggers and evaluating climate model simulations. The first global compilation of speleothem isotope records by the SISAL (Speleothem Isotope Synthesis and Analysis) working group showed that age model uncertainties are not systematically reported in the published literature, and these are only available for a limited number of records (ca. 15 %, n = 107=691). To improve the usefulness of the SISAL database, we have (i) improved the database's spatiooral coverage and (ii) created new chronologies using seven different approaches for age depth modelling. We have applied these alternative chronologies to the records from the first version of the SISAL database (SISALv1) and to new records compiled since the release of SISALv1. This paper documents the necessary changes in the structure of the SISAL database to accommodate the inclusion of the new age models and their uncertainties as well as the expansion of the database to include new records and the qualitycontrol measures applied. This paper also documents the age depth model approaches used to calculate the new chronologies. The updated version of the SISAL database (SISALv2) contains isotopic data from 691 speleothem records from 294 cave sites and new age depth models, including age depth temporal uncertainties for 512 speleothems. SISALv2 is available at https://doi.org/10.17864/1947.256 (Comas-Bru et al., 2020a). © 2020 Author(s)
The changing face of the Mediterranean: land cover, demography, and environmental change
This paper introduces a special issue on The Changing Face of the Mediterranean: Land Cover, Demography, and Environmental Change, which brings together up-to-date regional or thematic perspectives on major long-term trends in Mediterranean human–environment relations. Particularly, important insights are provided by palynology to reconstruct past vegetation and land cover, and archaeology to establish long-term demographic trends, but with further significant input from palaeoclimatology, palaeofire research and geomorphology. Here, we introduce the rationale behind this pan-Mediterranean research initiative, outline its major sources of evidence and method, and describe how individual submissions work to complement one another
Loss of heterozygosity of TRIM3 in malignant gliomas
<p>Abstract</p> <p>Background</p> <p>Malignant gliomas are frequent primary brain tumors associated with poor prognosis and very limited response to conventional chemo- and radio-therapies. Besides sharing common growth features with other types of solid tumors, gliomas are highly invasive into adjacent brain tissue, which renders them particularly aggressive and their surgical resection inefficient. Therefore, insights into glioma formation are of fundamental interest in order to provide novel molecular targets for diagnostic purposes and potential anti-cancer drugs. Human <it>Tripartite motif protein 3 </it>(<it>TRIM3</it>) encodes a structural homolog of <it>Drosophila brain tumor </it>(<it>brat</it>) implicated in progenitor cell proliferation control and cancer stem cell suppression. <it>TRIM3 </it>is located within the loss of allelic heterozygosity (LOH) hotspot of chromosome segment 11p15.5, indicating a potential role in tumor suppression. ...</p> <p>Methods</p> <p>Here we analyze 70 primary human gliomas of all types and grades and report somatic deletion mapping as well as single nucleotide polymorphism analysis together with quantitative real-time PCR of chromosome segment 11p15.5.</p> <p>Results</p> <p>Our analysis identifies LOH in 17 cases (24%) of primary human glioma which defines a common 130 kb-wide interval within the <it>TRIM3 </it>locus as a minimal area of loss. We further detect altered genomic dosage of <it>TRIM3 </it>in two glioma cases with LOH at 11p15.5, indicating homozygous deletions of <it>TRIM3</it>.</p> <p>Conclusion</p> <p>Loss of heterozygosity of chromosome segment 11p15.5 in malignant gliomas suggests <it>TRIM3 </it>as a candidate brain tumor suppressor gene.</p
Moving from contractor to owner operator: Impact on safety culture; a case study
Purpose – The purpose of this paper is to investigate whether a change in staffing contractual arrangements, specific training in hazard identification, mentoring of supervisors and the introduction of a robust safety system could improve an organisation\u27s safety culture. How safety conditions change under contracted out labour compared to direct labour and the influence that contracting out has on organisational safety culture is explored. Design/methodology/approach – The study used a case study methodology to detail how the change occurred over a six month period in 2011. As part of the analysis a model of the change process and push-pull factors is offered. Findings – As a result of the change, all areas saw some improvement. Work-related injury statistics dropped significantly, supervisors were clear of their roles, actively monitoring their crews to ensure they worked in a safer manner than before, and staff were actively addressing work-place hazards. With the safety system in place the organisation should be deemed compliant and diligent by the state auditing authorities. This study has also shown that using contractor workers together with in-house workers that are managed under different safety regimes is problematic. The problems don’t occur due to the contractor\u27s safety systems being less robust than the parent company\u27s or that contract workers are themselves less safe; it is the added complexity of managing multiple safety regimes and the lack of trust of the robustness of each system that create conflict. Research limitations/implications – The paper reports on the change process of one mining organisation in Western Australia as a case study from a managerial sample and is thereby limited. Practical implications – This study demonstrates the difficulties in changing safety culture in an underground mining organisation. The paper argues the need for specialised training in identifying hazards by the staff, the mentoring of supervisory staff and the adoption of a robust safety system to support improved safety culture. Originality/value – There is little research conducted in the resources sector researching changes in human resource supply and OHS management, in particular moving from contracted labour to hiring in-house. This case provides an insight into how a change in staffing hiring arrangements, together with specific safety initiatives, has a positive impact on safety performance
Evaluating model outputs using integrated global speleothem records of climate change since the last glacial
Although quantitative isotope data from speleothems has been used to evaluate isotope-enabled model simulations, currently no consensus exists regarding the most appropriate methodology through which to achieve this. A number of modelling groups will be running isotope-enabled palaeoclimate simulations in the framework of the Coupled Model Intercomparison Project Phase 6, so it is timely to evaluate different approaches to using the speleothem data for data–model comparisons. Here, we illustrate this using 456 globally distributed speleothem δ18O records from an updated version of the Speleothem Isotopes Synthesis and Analysis (SISAL) database and palaeoclimate simulations generated using the ECHAM5-wiso isotope-enabled atmospheric circulation model. We show that the SISAL records reproduce the first-order spatial patterns of isotopic variability in the modern day, strongly supporting the application of this dataset for evaluating model-derived isotope variability into the past. However, the discontinuous nature of many speleothem records complicates the process of procuring large numbers of records if data–model comparisons are made using the traditional approach of comparing anomalies between a control period and a given palaeoclimate experiment. To circumvent this issue, we illustrate techniques through which the absolute isotope values during any time period could be used for model evaluation. Specifically, we show that speleothem isotope records allow an assessment of a model's ability to simulate spatial isotopic trends. Our analyses provide a protocol for using speleothem isotope data for model evaluation, including screening the observations to take into account the impact of speleothem mineralogy on δ18O values, the optimum period for the modern observational baseline and the selection of an appropriate time window for creating means of the isotope data for palaeo-time-slices
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