Sparse Coding for Data Augmentation of Hyperspectral Medical Images

Hyperspectral imaging presents detailed information about the electromagneticspectrum of an object in three dimensions. The significant point about the hyperspectral images is that it contains tens or hundreds of spectral layers, which provide precise data about the composition of the studied material. Therefore, hyperspectral images have been popular in many fields of study, such as medical diagnostic imaging. Speed and precision are key points to save human life in disease diagnosis, and applying machine learning techniques to medical hyperspectral images helps answer this need. Convolutional neural networka are one of the most popular machine learning methods for classifying medical images. However, training neural networks, in general, requires a large dataset, and the small size of medical imaging datasets results in a problem. In this thesis, we propose sparse coding algorithms to regenerate the hyperspectral data and feed it to the CNN model for training. This issue can be solved with the help of sparse coding algorithms. We focus on a colon cancer hyperspectral image dataset and different sparse coding methods utilizing K-SVD and A+ (with and without patching) as dictionary learning methods. The new reconstructed images have been added to the original image set and provided three new training sets with doubled number of images (246) for training the CNN. Using the augmented datasets, the test accuracy has risen to 86.53%, which is 30.13% higher than the original dataset (56.4%). We have also generated another dataset which is a mixture of the three reconstruction methods, and increased the number of training images to 266. Using the mixed dataset, the accuracy has reached 94.23%, and the difference between the test and training accuracy has dropped by 15.42%. Also, the precision has increased to 100%, which means there is no non-malignant image classified as a lesional image

Deep Learning Meets Hyperspectral Image Analysis: A Multidisciplinary Review

Modern hyperspectral imaging systems produce huge datasets potentially conveying a great abundance of information; such a resource, however, poses many challenges in the analysis and interpretation of these data. Deep learning approaches certainly offer a great variety of opportunities for solving classical imaging tasks and also for approaching new stimulating problems in the spatial–spectral domain. This is fundamental in the driving sector of Remote Sensing where hyperspectral technology was born and has mostly developed, but it is perhaps even more true in the multitude of current and evolving application sectors that involve these imaging technologies. The present review develops on two fronts: on the one hand, it is aimed at domain professionals who want to have an updated overview on how hyperspectral acquisition techniques can combine with deep learning architectures to solve specific tasks in different application fields. On the other hand, we want to target the machine learning and computer vision experts by giving them a picture of how deep learning technologies are applied to hyperspectral data from a multidisciplinary perspective. The presence of these two viewpoints and the inclusion of application fields other than Remote Sensing are the original contributions of this review, which also highlights some potentialities and critical issues related to the observed development trends

Técnicas de compresión de imágenes hiperespectrales sobre hardware reconfigurable

Tesis de la Universidad Complutense de Madrid, Facultad de Informática, leída el 18-12-2020Sensors are nowadays in all aspects of human life. When possible, sensors are used remotely. This is less intrusive, avoids interferces in the measuring process, and more convenient for the scientist. One of the most recurrent concerns in the last decades has been sustainability of the planet, and how the changes it is facing can be monitored. Remote sensing of the earth has seen an explosion in activity, with satellites now being launched on a weekly basis to perform remote analysis of the earth, and planes surveying vast areas for closer analysis...Los sensores aparecen hoy en día en todos los aspectos de nuestra vida. Cuando es posible, de manera remota. Esto es menos intrusivo, evita interferencias en el proceso de medida, y además facilita el trabajo científico. Una de las preocupaciones recurrentes en las últimas décadas ha sido la sotenibilidad del planeta, y cómo menitoirzar los cambios a los que se enfrenta. Los estudios remotos de la tierra han visto un gran crecimiento, con satélites lanzados semanalmente para analizar la superficie, y aviones sobrevolando grades áreas para análisis más precisos...Fac. de InformáticaTRUEunpu

Spectral-spatial classification of n-dimensional images in real-time based on segmentation and mathematical morphology on GPUs

The objective of this thesis is to develop efficient schemes for spectral-spatial n-dimensional image classification. By efficient schemes, we mean schemes that produce good classification results in terms of accuracy, as well as schemes that can be executed in real-time on low-cost computing infrastructures, such as the Graphics Processing Units (GPUs) shipped in personal computers. The n-dimensional images include images with two and three dimensions, such as images coming from the medical domain, and also images ranging from ten to hundreds of dimensions, such as the multiand hyperspectral images acquired in remote sensing. In image analysis, classification is a regularly used method for information retrieval in areas such as medical diagnosis, surveillance, manufacturing and remote sensing, among others. In addition, as the hyperspectral images have been widely available in recent years owing to the reduction in the size and cost of the sensors, the number of applications at lab scale, such as food quality control, art forgery detection, disease diagnosis and forensics has also increased. Although there are many spectral-spatial classification schemes, most are computationally inefficient in terms of execution time. In addition, the need for efficient computation on low-cost computing infrastructures is increasing in line with the incorporation of technology into everyday applications. In this thesis we have proposed two spectral-spatial classification schemes: one based on segmentation and other based on wavelets and mathematical morphology. These schemes were designed with the aim of producing good classification results and they perform better than other schemes found in the literature based on segmentation and mathematical morphology in terms of accuracy. Additionally, it was necessary to develop techniques and strategies for efficient GPU computing, for example, a block–asynchronous strategy, resulting in an efficient implementation on GPU of the aforementioned spectral-spatial classification schemes. The optimal GPU parameters were analyzed and different data partitioning and thread block arrangements were studied to exploit the GPU resources. The results show that the GPU is an adequate computing platform for on-board processing of hyperspectral information

MICCS: A Novel Framework for Medical Image Compression Using Compressive Sensing

The vision of some particular applications such as robot-guided remote surgery where the image of a patient body will need to be captured by the smart visual sensor and to be sent on a real-time basis through a network of high bandwidth but yet limited. The particular problem considered for the study is to develop a mechanism of a hybrid approach of compression where the Region-of-Interest (ROI) should be compressed with lossless compression techniques and Non-ROI should be compressed with Compressive Sensing (CS) techniques. So the challenge is gaining equal image quality for both ROI and Non-ROI while overcoming optimized dimension reduction by sparsity into Non-ROI. It is essential to retain acceptable visual quality to Non-ROI compressed region to obtain a better reconstructed image. This step could bridge the trade-off between image quality and traffic load. The study outcomes were compared with traditional hybrid compression methods to find that proposed method achieves better compression performance as compared to conventional hybrid compression techniques on the performances parameters e.g. PSNR, MSE, and Compression Ratio

PSO-SVM hybrid system for melanoma detection from histo-pathological images

This paper introduces an automated system for skin cancer (melanoma) detection from Histo-pathological images sampled from microscopic slides of skin biopsy. The proposed system is a hybrid system based on Particle Swarm Optimization and Support Vector Machine (PSO-SVM). The features used are extracted from the grayscale image histogram, the co-occurrence matrix and the energy of the wavelet coefficients resulting from the wavelet packet decomposition. The PSO-SVM system selects the best feature set and the best values for the SVM parameters (C and γ) that optimize the performance of the SVM classifier.   The system performance is tested on a real dataset obtained from the Southern Pathology Laboratory in Wollongong NSW, Australia. Evaluation results show a classification accuracy of 87.13%, a sensitivity of 94.1% and a specificity of 80.22%.The sensitivity and specificity results are comparable to those obtained by dermatologists

K-Means Segmentation Based-on Lab Color Space for Embryo Detection in Incubated Egg

The quality of the hatching process influences the success of the hatch rate besides the inherent egg factors. Eliminating infertile or dead eggs and monitoring embryonic growth are very important factors in efficient hatchery practices. This process aims to sort eggs that only have embryos to remain in the incubator until the end of the hatching process. This process aims to sort eggs with embryos to remain hatched until the end. Maximum checking is done the first week in the hatching period. This study aims to detect the presence of embryos in eggs. Detection of the existence of embryos is processed using segmentation. Egg images are segmented using the K-means algorithm based on Lab color images. The results of the image acquisition are converted into Lab color space images. The results of Lab color space images are processed using K-means for each color. The K-means process uses cluster k=3, where this cluster divides the image into three parts: background, eggs, and yolk. Egg yolks are part of eggs that have embryonic characteristics. This study applies the concept of color in the initial segmentation and grayscale in the final stages. The initial phase results show that the image segmentation results using k-means clustering based on Lab color space provide a grouping of three parts. At the grayscale image processing stage, the results of color image segmentation are processed with grayscaling, image enhancement, and morphology. Thus, it seems clear that the yolk segmented shows the presence of egg embryos. Based on this process and results, the initial stages of the embryo detection process used K-means segmentation based on Lab color space. The evaluation uses MSE and MSSIM, with values of 0.0486 and 0.9979; this can be used as a reference that the results obtained can detect embryos in egg yolk. This protocol could be used in a non-destructive quantitative study on embryos and their morphology in a precision poultry production system in the future

3D multiresolution statistical approaches for accelerated medical image and volume segmentation

This thesis was submitted for the degree of Doctor of Philosophy and awarded by Brunel University.Medical volume segmentation got the attraction of many researchers; therefore, many techniques have been implemented in terms of medical imaging including segmentations and other imaging processes. This research focuses on an implementation of segmentation system which uses several techniques together or on their own to segment medical volumes, the system takes a stack of 2D slices or a full 3D volumes acquired from medical scanners as a data input. Two main approaches have been implemented in this research for segmenting medical volume which are multi-resolution analysis and statistical modeling. Multi-resolution analysis has been mainly employed in this research for extracting the features. Higher dimensions of discontinuity (line or curve singularity) have been extracted in medical images using a modified multi-resolution analysis transforms such as ridgelet and curvelet transforms. The second implemented approach in this thesis is the use of statistical modeling in medical image segmentation; Hidden Markov models have been enhanced here to segment medical slices automatically, accurately, reliably and with lossless results. But the problem with using Markov models here is the computational time which is too long. This has been addressed by using feature reduction techniques which has also been implemented in this thesis. Some feature reduction and dimensionality reduction techniques have been used to accelerate the slowest block in the proposed system. This includes Principle Components Analysis, Gaussian Pyramids and other methods. The feature reduction techniques have been employed efficiently with the 3D volume segmentation techniques such as 3D wavelet and 3D Hidden Markov models. The system has been tested and validated using several procedures starting at a comparison with the predefined results, crossing the specialists’ validations, and ending by validating the system using a survey filled by the end users explaining the techniques and the results. This concludes that Markovian models segmentation results has overcome all other techniques in most patients’ cases. Curvelet transform has been also proved promising segmentation results; the end users rate it better than Markovian models due to the long time required with Hidden Markov models

Proceedings of the second "international Traveling Workshop on Interactions between Sparse models and Technology" (iTWIST'14)

The implicit objective of the biennial "international - Traveling Workshop on Interactions between Sparse models and Technology" (iTWIST) is to foster collaboration between international scientific teams by disseminating ideas through both specific oral/poster presentations and free discussions. For its second edition, the iTWIST workshop took place in the medieval and picturesque town of Namur in Belgium, from Wednesday August 27th till Friday August 29th, 2014. The workshop was conveniently located in "The Arsenal" building within walking distance of both hotels and town center. iTWIST'14 has gathered about 70 international participants and has featured 9 invited talks, 10 oral presentations, and 14 posters on the following themes, all related to the theory, application and generalization of the "sparsity paradigm": Sparsity-driven data sensing and processing; Union of low dimensional subspaces; Beyond linear and convex inverse problem; Matrix/manifold/graph sensing/processing; Blind inverse problems and dictionary learning; Sparsity and computational neuroscience; Information theory, geometry and randomness; Complexity/accuracy tradeoffs in numerical methods; Sparsity? What's next?; Sparse machine learning and inference.Comment: 69 pages, 24 extended abstracts, iTWIST'14 website: http://sites.google.com/site/itwist1