Query-based comparison of OBDA specifications

An ontology-based data access (OBDA) system is composed of one or more data sources, an ontology that provides a conceptual view of the data, and declarative mappings that relate the data and ontology schemas. In order to debug and optimize such systems, it is important to be able to analyze and compare OBDA specifications. Recent work in this direction compared specifications using classical notions of equivalence and entailment, but an interesting alternative is to consider query-based notions, in which two specifications are deemed equivalent if they give the same answers to the considered query or class of queries for all possible data sources. In this paper, we define such query-based notions of entailment and equivalence of OBDA specifications and investigate the complexity of the resulting analysis tasks when the ontology is formulated in DL-LiteR

Using Ontologies for Semantic Data Integration

While big data analytics is considered as one of the most important paths to competitive advantage of today’s enterprises, data scientists spend a comparatively large amount of time in the data preparation and data integration phase of a big data project. This shows that data integration is still a major challenge in IT applications. Over the past two decades, the idea of using semantics for data integration has become increasingly crucial, and has received much attention in the AI, database, web, and data mining communities. Here, we focus on a specific paradigm for semantic data integration, called Ontology-Based Data Access (OBDA). The goal of this paper is to provide an overview of OBDA, pointing out both the techniques that are at the basis of the paradigm, and the main challenges that remain to be addressed

Query Rewriting and Optimization for Ontological Databases

Ontological queries are evaluated against a knowledge base consisting of an extensional database and an ontology (i.e., a set of logical assertions and constraints which derive new intensional knowledge from the extensional database), rather than directly on the extensional database. The evaluation and optimization of such queries is an intriguing new problem for database research. In this paper, we discuss two important aspects of this problem: query rewriting and query optimization. Query rewriting consists of the compilation of an ontological query into an equivalent first-order query against the underlying extensional database. We present a novel query rewriting algorithm for rather general types of ontological constraints which is well-suited for practical implementations. In particular, we show how a conjunctive query against a knowledge base, expressed using linear and sticky existential rules, that is, members of the recently introduced Datalog+/- family of ontology languages, can be compiled into a union of conjunctive queries (UCQ) against the underlying database. Ontological query optimization, in this context, attempts to improve this rewriting process so to produce possibly small and cost-effective UCQ rewritings for an input query.Comment: arXiv admin note: text overlap with arXiv:1312.5914 by other author

Inconsistency-tolerant Query Answering in Ontology-based Data Access

Ontology-based data access (OBDA) is receiving great attention as a new paradigm for managing information systems through semantic technologies. According to this paradigm, a Description Logic ontology provides an abstract and formal representation of the domain of interest to the information system, and is used as a sophisticated schema for accessing the data and formulating queries over them. In this paper, we address the problem of dealing with inconsistencies in OBDA. Our general goal is both to study DL semantical frameworks that are inconsistency-tolerant, and to devise techniques for answering unions of conjunctive queries under such inconsistency-tolerant semantics. Our work is inspired by the approaches to consistent query answering in databases, which are based on the idea of living with inconsistencies in the database, but trying to obtain only consistent information during query answering, by relying on the notion of database repair. We first adapt the notion of database repair to our context, and show that, according to such a notion, inconsistency-tolerant query answering is intractable, even for very simple DLs. Therefore, we propose a different repair-based semantics, with the goal of reaching a good compromise between the expressive power of the semantics and the computational complexity of inconsistency-tolerant query answering. Indeed, we show that query answering under the new semantics is first-order rewritable in OBDA, even if the ontology is expressed in one of the most expressive members of the DL-Lite family

Abstraction in ontology-based data management

In many aspects of our society there is growing awareness and consent on the need for data-driven approaches that are resilient, transparent, and fully accountable. But in order to fulfil the promises and benefits of a data-driven society, it is necessary that the data services exposed by the organisations' information systems are well-documented, and their semantics is clearly specified. Effectively documenting data services is indeed a crucial issue for organisations, not only for governing their own data, but also for interoperation purposes. In this thesis, we propose a new approach to automatically associate formal semantic descriptions to data services, thus bringing them into compliance with the FAIR guiding principles, i.e., make data services automatically Findable, Accessible, Interoperable, and Reusable (FAIR). We base our proposal on the Ontology-based Data Management (OBDM) paradigm, where a domain ontology is used to provide a semantic layer mapped to the data sources of an organisation, thus abstracting from the technical details of the data layer implementation. The basic idea is to characterise or explain the semantics of a given data service expressed as query over the source schema in terms of a query over the ontology. Thus, the query over the ontology represents an abstraction of the given data service in terms of the domain ontology through the mapping, and, together with the elements in the vocabulary of the ontology, such abstraction forms a basis for annotating the given data service with suitable metadata expressing its semantics. We illustrate a formal framework for the task of automatically produce a semantic characterisation of a given data service expressed as a query over the source schema. The framework is based on three semantically well-founded notions, namely perfect, sound, and complete source-to-ontology rewriting, and on two associated basic computational problems, namely verification and computation. The former verifies whether a given query over the ontology is a perfect (respectively, sound, complete) source-to-ontology rewriting of a given data service expressed as a query over the source schema, whereas the latter computes one such rewriting, provided it exists. We provide an in-depth complexity analysis of these two computational problems in a very general scenario which uses languages amongst the most popular considered in the literature of managing data through an ontology. Furthermore, since we study also cases where the target query language for expressing source-to-ontology rewritings allows inequality atoms, we also investigate the problem of answering queries with inequalities over lightweight ontologies, a problem that has been rarely addressed. In another direction, we study and advocate the use of a non-monotonic target query language for expressing source-to-ontology rewritings. Last but not least, we outline a detailed related work, which illustrates how the results achieved in this thesis notably contributes to new results in the Semantic Web context, in the relational database theory, and in view-based query processing

Temporal Query Answering in DL-Lite over Inconsistent Data

In ontology-based systems that process data stemming from different sources and that is received over time, as in context-aware systems, reasoning needs to cope with the temporal dimension and should be resilient against inconsistencies in the data. Motivated by such settings, this paper addresses the problem of handling inconsistent data in a temporal version of ontology-based query answering. We consider a recently proposed temporal query language that combines conjunctive queries with operators of propositional linear temporal logic and extend to this setting three inconsistency-tolerant semantics that have been introduced for querying inconsistent description logic knowledge bases. We investigate their complexity for DL-LiteR temporal knowledge bases, and furthermore complete the picture for the consistent case

Query Answering in Probabilistic Data and Knowledge Bases

Probabilistic data and knowledge bases are becoming increasingly important in academia and industry. They are continuously extended with new data, powered by modern information extraction tools that associate probabilities with knowledge base facts. The state of the art to store and process such data is founded on probabilistic database systems, which are widely and successfully employed. Beyond all the success stories, however, such systems still lack the fundamental machinery to convey some of the valuable knowledge hidden in them to the end user, which limits their potential applications in practice. In particular, in their classical form, such systems are typically based on strong, unrealistic limitations, such as the closed-world assumption, the closed-domain assumption, the tuple-independence assumption, and the lack of commonsense knowledge. These limitations do not only lead to unwanted consequences, but also put such systems on weak footing in important tasks, querying answering being a very central one. In this thesis, we enhance probabilistic data and knowledge bases with more realistic data models, thereby allowing for better means for querying them. Building on the long endeavor of unifying logic and probability, we develop different rigorous semantics for probabilistic data and knowledge bases, analyze their computational properties and identify sources of (in)tractability and design practical scalable query answering algorithms whenever possible. To achieve this, the current work brings together some recent paradigms from logics, probabilistic inference, and database theory

Combining open and closed world reasoning for the semantic web

Dissertação para obtenção do Grau de Doutor em InformáticaOne important problem in the ongoing standardization of knowledge representation languages for the Semantic Web is combining open world ontology languages, such as the OWL-based ones, and closed world rule-based languages. The main difficulty of such a combination is that both formalisms are quite orthogonal w.r.t. expressiveness and how decidability is achieved. Combining non-monotonic rules and ontologies is thus a challenging task that requires careful balancing between expressiveness of the knowledge representation language and the computational complexity of reasoning. In this thesis, we will argue in favor of a combination of ontologies and nonmonotonic rules that tightly integrates the two formalisms involved, that has a computational complexity that is as low as possible, and that allows us to query for information instead of calculating the whole model. As our starting point we choose the mature approach of hybrid MKNF knowledge bases, which is based on an adaptation of the Stable Model Semantics to knowledge bases consisting of ontology axioms and rules. We extend the two-valued framework of MKNF logics to a three-valued logics, and we propose a well-founded semantics for non-disjunctive hybrid MKNF knowledge bases. This new semantics promises to provide better efficiency of reasoning,and it is faithful w.r.t. the original two-valued MKNF semantics and compatible with both the OWL-based semantics and the traditional Well- Founded Semantics for logic programs. We provide an algorithm based on operators to compute the unique model, and we extend SLG resolution with tabling to a general framework that allows us to query a combination of non-monotonic rules and any given ontology language. Finally, we investigate concrete instances of that procedure w.r.t. three tractable ontology languages, namely the three description logics underlying the OWL 2 pro les.Fundação para a Ciência e Tecnologia - grant contract SFRH/BD/28745/200

Tree-like Queries in OWL 2 QL: Succinctness and Complexity Results

This paper investigates the impact of query topology on the difficulty of answering conjunctive queries in the presence of OWL 2 QL ontologies. Our first contribution is to clarify the worst-case size of positive existential (PE), non-recursive Datalog (NDL), and first-order (FO) rewritings for various classes of tree-like conjunctive queries, ranging from linear queries to bounded treewidth queries. Perhaps our most surprising result is a superpolynomial lower bound on the size of PE-rewritings that holds already for linear queries and ontologies of depth 2. More positively, we show that polynomial-size NDL-rewritings always exist for tree-shaped queries with a bounded number of leaves (and arbitrary ontologies), and for bounded treewidth queries paired with bounded depth ontologies. For FO-rewritings, we equate the existence of polysize rewritings with well-known problems in Boolean circuit complexity. As our second contribution, we analyze the computational complexity of query answering and establish tractability results (either NL- or LOGCFL-completeness) for a range of query-ontology pairs. Combining our new results with those from the literature yields a complete picture of the succinctness and complexity landscapes for the considered classes of queries and ontologies.Comment: This is an extended version of a paper accepted at LICS'15. It contains both succinctness and complexity results and adopts FOL notation. The appendix contains proofs that had to be omitted from the conference version for lack of space. The previous arxiv version (a long version of our DL'14 workshop paper) only contained the succinctness results and used description logic notatio

Knowledge base exchange: the case of OWL 2 QL

In this article, we define and study the problem of exchanging knowledge between a source and a target knowledge base (KB), connected through mappings. Differently from the traditional database exchange setting, which considers only the exchange of data, we are interested in exchanging implicit knowledge. As representation formalism we use Description Logics (DLs), thus assuming that the source and target KBs are given as a DL TBox+ABox, while the mappings have the form of DL TBox assertions. We define a general framework of KB exchange, and study the problem of translating the knowledge in the source KB according to the mappings expressed in OWL 2 QL, the profile of the standard Web Ontology Language OWL 2 based on the description logic DL-LiteR. We develop novel game- and automata-theoretic techniques, and we provide complexity results that range from NLogSpace to ExpTim