Kernel solver design of FPGA-based real-time simulator for active distribution networks

The field-programmable gate array (FPGA)-based real-time simulator takes advantage of many merits of FPGA, such as small time-step, high simulation precision, rich I/O interface resources, and low cost. The sparse linear equations formed by the node conductance matrix need to be solved repeatedly within each time-step, which introduces great challenges to the performance of the real-time simulator. In this paper, a fine-grained solver of the FPGA-based real-time simulator for active distribution networks is designed to meet the computational demand. The framework of the solver, offline process design on PC and online process design on FPGA are proposed in detail. The modified IEEE 33-node system with photovoltaics is simulated on a 4-FPGA-based real-time simulator. Simulation results are compared with PSCAD/EMTDC under the same conditions to validate the solver design

Co-simulation techniques based on virtual platforms for SoC design and verification in power electronics applications

En las últimas décadas, la inversión en el ámbito energético ha aumentado considerablemente. Actualmente, existen numerosas empresas que están desarrollando equipos como convertidores de potencia o máquinas eléctricas con sistemas de control de última generación. La tendencia actual es usar System-on-chips y Field Programmable Gate Arrays para implementar todo el sistema de control. Estos dispositivos facilitan el uso de algoritmos de control más complejos y eficientes, mejorando la eficiencia de los equipos y habilitando la integración de los sistemas renovables en la red eléctrica. Sin embargo, la complejidad de los sistemas de control también ha aumentado considerablemente y con ello la dificultad de su verificación. Los sistemas Hardware-in-the-loop (HIL) se han presentado como una solución para la verificación no destructiva de los equipos energéticos, evitando accidentes y pruebas de alto coste en bancos de ensayo. Los sistemas HIL simulan en tiempo real el comportamiento de la planta de potencia y su interfaz para realizar las pruebas con la placa de control en un entorno seguro. Esta tesis se centra en mejorar el proceso de verificación de los sistemas de control en aplicaciones de electrónica potencia. La contribución general es proporcionar una alternativa a al uso de los HIL para la verificación del hardware/software de la tarjeta de control. La alternativa se basa en la técnica de Software-in-the-loop (SIL) y trata de superar o abordar las limitaciones encontradas hasta la fecha en el SIL. Para mejorar las cualidades de SIL se ha desarrollado una herramienta software denominada COSIL que permite co-simular la implementación e integración final del sistema de control, sea software (CPU), hardware (FPGA) o una mezcla de software y hardware, al mismo tiempo que su interacción con la planta de potencia. Dicha plataforma puede trabajar en múltiples niveles de abstracción e incluye soporte para realizar co-simulación mixtas en distintos lenguajes como C o VHDL. A lo largo de la tesis se hace hincapié en mejorar una de las limitaciones de SIL, su baja velocidad de simulación. Se proponen diferentes soluciones como el uso de emuladores software, distintos niveles de abstracción del software y hardware, o relojes locales en los módulos de la FPGA. En especial se aporta un mecanismo de sincronizaron externa para el emulador software QEMU habilitando su emulación multi-core. Esta aportación habilita el uso de QEMU en plataformas virtuales de co-simulacion como COSIL. Toda la plataforma COSIL, incluido el uso de QEMU, se ha analizado bajo diferentes tipos de aplicaciones y bajo un proyecto industrial real. Su uso ha sido crítico para desarrollar y verificar el software y hardware del sistema de control de un convertidor de 400 kVA

Accelerating Linear Algebra and Machine Learning Kernels on a Massively Parallel Reconfigurable Architecture

abstract: This thesis presents efficient implementations of several linear algebra kernels, machine learning kernels and a neural network based recommender systems engine onto a massively parallel reconfigurable architecture, Transformer. The linear algebra kernels include Triangular Matrix Solver (TRSM), LU Decomposition (LUD), QR Decomposition (QRD), and Matrix Inversion. The machine learning kernels include an LSTM (Long Short Term Memory) cell, and a GRU (gated Recurrent Unit) cell used in recurrent neural networks. The neural network based recommender systems engine consists of multiple kernels including fully connected layers, embedding layer, 1-D batchnorm, Adam optimizer, etc. Transformer is a massively parallel reconfigurable multicore architecture designed at the University of Michigan. The Transformer configuration considered here is 4 tiles and 16 General Processing Elements (GPEs) per tile. It supports a two level cache hierarchy where the L1 and L2 caches can operate in shared (S) or private (P) modes. The architecture was modeled using Gem5 and cycle accurate simulations were done to evaluate the performance in terms of execution times, giga-operations per second per Watt (GOPS/W), and giga-floating-point-operations per second per Watt (GFLOPS/W). This thesis shows that for linear algebra kernels, each kernel achieves high performance for a certain cache mode and that this cache mode can change when the matrix size changes. For instance, for smaller matrix sizes, L1P, L2P cache mode is best for TRSM, while L1S, L2S is the best cache mode for LUD, and L1P, L2S is the best for QRD. For each kernel, the optimal cache mode changes when the matrix size is increased. For instance, for TRSM, the L1P, L2P cache mode is best for smaller matrix sizes ($N=64, 128, 256, 512$) and it changes to L1S, L2P for larger matrix sizes ($N=1024$). For machine learning kernels, L1P, L2P is the best cache mode for all network parameter sizes. Gem5 simulations show that the peak performance for TRSM, LUD, QRD and Matrix Inverse in the 14nm node is 97.5, 59.4, 133.0 and 83.05 GFLOPS/W, respectively. For LSTM and GRU, the peak performance is 44.06 and 69.3 GFLOPS/W. The neural network based recommender system was implemented in L1S, L2S cache mode. It includes a forward pass and a backward pass and is significantly more complex in terms of both computational complexity and data movement. The most computationally intensive block is the fully connected layer followed by Adam optimizer. The overall performance of the recommender systems engine is 54.55 GFLOPS/W and 169.12 GOPS/W.Dissertation/ThesisMasters Thesis Electrical Engineering 201

SPICE²: A Spatial, Parallel Architecture for Accelerating the Spice Circuit Simulator

Spatial processing of sparse, irregular floating-point computation using a single FPGA enables up to an order of magnitude speedup (mean 2.8X speedup) over a conventional microprocessor for the SPICE circuit simulator. We deliver this speedup using a hybrid parallel architecture that spatially implements the heterogeneous forms of parallelism available in SPICE. We decompose SPICE into its three constituent phases: Model-Evaluation, Sparse Matrix-Solve, and Iteration Control and parallelize each phase independently. We exploit data-parallel device evaluations in the Model-Evaluation phase, sparse dataflow parallelism in the Sparse Matrix-Solve phase and compose the complete design in streaming fashion. We name our parallel architecture SPICE²: Spatial Processors Interconnected for Concurrent Execution for accelerating the SPICE circuit simulator. We program the parallel architecture with a high-level, domain-specific framework that identifies, exposes and exploits parallelism available in the SPICE circuit simulator. This design is optimized with an auto-tuner that can scale the design to use larger FPGA capacities without expert intervention and can even target other parallel architectures with the assistance of automated code-generation. This FPGA architecture is able to outperform conventional processors due to a combination of factors including high utilization of statically-scheduled resources, low-overhead dataflow scheduling of fine-grained tasks, and overlapped processing of the control algorithms. We demonstrate that we can independently accelerate Model-Evaluation by a mean factor of 6.5X(1.4--23X) across a range of non-linear device models and Matrix-Solve by 2.4X(0.6--13X) across various benchmark matrices while delivering a mean combined speedup of 2.8X(0.2--11X) for the two together when comparing a Xilinx Virtex-6 LX760 (40nm) with an Intel Core i7 965 (45nm). With our high-level framework, we can also accelerate Single-Precision Model-Evaluation on NVIDIA GPUs, ATI GPUs, IBM Cell, and Sun Niagara 2 architectures. We expect approaches based on exploiting spatial parallelism to become important as frequency scaling slows down and modern processing architectures turn to parallelism (\eg multi-core, GPUs) due to constraints of power consumption. This thesis shows how to express, exploit and optimize spatial parallelism for an important class of problems that are challenging to parallelize.</p

Multi-Criteria Optimization of Real-Time DAGs on Heterogeneous Platforms under P-EDF

This paper tackles the problem of optimal placement of complex real-time embedded applications on heterogeneous platforms. Applications are composed of directed acyclic graphs of tasks, with each DAG having a minimum inter-arrival period for its activation requests, and an end-to-end deadline within which all of the computations need to terminate since each activation. The platforms of interest are heterogeneous power-aware multi-core platforms with DVFS capabilities, including big.LITTLE Arm architectures, and platforms with GPU or FPGA hardware accelerators with Dynamic Partial Reconfiguration capabilities. Tasks can be deployed on CPUs using partitioned EDF-based scheduling. Additionally, some of the tasks may have an alternate implementation available for one of the accelerators on the target platform, which are assumed to serve requests in non-preemptive FIFO order. The system can be optimized by: minimizing power consumption, respecting precise timing constraints; maximizing the applications’ slack, respecting given power consumption constraints; or even a combination of these, in a multi-objective formulation. We propose an off-line optimization of the mentioned problem based on mixed-integer quadratic constraint programming (MIQCP). The optimization provides the DVFS configuration of all the CPUs (or accelerators) capable of frequency switching and the placement to be followed by each task in the DAGs, including the software-vs-hardware implementation choice for tasks that can be hardware-accelerated. For relatively big problems, we developed heuristic solvers capable of providing suboptimal solutions in a significantly reduced time compared to the MIQCP strategy, thus widening the applicability of the proposed framework. We validate the approach by running a set of randomly generated DAGs on Linux under SCHED_DEADLINE, deployed onto two real boards, one with Arm big.LITTLE architecture, the other with FPGA acceleration, verifying that the experimental runs meet the theoretical expectations in terms of timing and power optimization goals

Architectural explorations for streaming accelerators with customized memory layouts

El concepto básico de la arquitectura mono-nucleo en los procesadores de propósito general se ajusta bien a un modelo de programación secuencial. La integración de multiples núcleos en un solo chip ha permitido a los procesadores correr partes del programa en paralelo. Sin embargo, la explotación del enorme paralelismo disponible en muchas aplicaciones de alto rendimiento y de los datos correspondientes es difícil de conseguir usando unicamente multicores de propósito general. La aparición de aceleradores tipo streaming y de los correspondientes modelos de programación han mejorado esta situación proporcionando arquitecturas orientadas al proceso de flujos de datos. La idea básica detrás del diseño de estas arquitecturas responde a la necesidad de procesar conjuntos enormes de datos. Estos dispositivos de alto rendimiento orientados a flujos permiten el procesamiento rapido de datos mediante el uso eficiente de computación paralela y comunicación entre procesos. Los aceleradores streaming orientados a flujos, igual que en otros procesadores, consisten en diversos componentes micro-arquitectonicos como por ejemplo las estructuras de memoria, las unidades de computo, las unidades de control, los canales de Entrada/Salida y controles de Entrada/Salida, etc. Sin embargo, los requisitos del flujo de datos agregan algunas características especiales e imponen otras restricciones que afectan al rendimiento. Estos dispositivos, por lo general, ofrecen un gran número de recursos computacionales, pero obligan a reorganizar los conjuntos de datos en paralelo, maximizando la independiencia para alimentar los recursos de computación en forma de flujos. La disposición de datos en conjuntos independientes de flujos paralelos no es una tarea sencilla. Es posible que se tenga que cambiar la estructura de un algoritmo en su conjunto o, incluso, puede requerir la reescritura del algoritmo desde cero. Sin embargo, todos estos esfuerzos para la reordenación de los patrones de las aplicaciones de acceso a datos puede que no sean muy útiles para lograr un rendimiento óptimo. Esto es debido a las posibles limitaciones microarquitectonicas de la plataforma de destino para los mecanismos hardware de prefetch, el tamaño y la granularidad del almacenamiento local, y la flexibilidad para disponer de forma serial los datos en el interior del almacenamiento local. Las limitaciones de una plataforma de streaming de proposito general para el prefetching de datos, almacenamiento y demas procedimientos para organizar y mantener los datos en forma de flujos paralelos e independientes podría ser eliminado empleando técnicas a nivel micro-arquitectonico. Esto incluye el uso de memorias personalizadas especificamente para las aplicaciones en el front-end de una arquitectura streaming. El objetivo de esta tesis es presentar exploraciones arquitectónicas de los aceleradores streaming con diseños de memoria personalizados. En general, la tesis cubre tres aspectos principales de tales aceleradores. Estos aspectos se pueden clasificar como: i) Diseño de aceleradores de aplicaciones específicas con diseños de memoria personalizados, ii) diseño de aceleradores con memorias personalizadas basados en plantillas, y iii) exploraciones del espacio de diseño para dispositivos orientados a flujos con las memorias estándar y personalizadas. Esta tesis concluye con la propuesta conceptual de una Blacksmith Streaming Architecture (BSArc). El modelo de computación Blacksmith permite la adopción a nivel de hardware de un front-end de aplicación específico utilizando una GPU como back-end. Esto permite maximizar la explotación de la localidad de datos y el paralelismo a nivel de datos de una aplicación mientras que proporciona un flujo mayor de datos al back-end. Consideramos que el diseño de estos procesadores con memorias especializadas debe ser proporcionado por expertos del dominio de aplicación en la forma de plantillas.The basic concept behind the architecture of a general purpose CPU core conforms well to a serial programming model. The integration of more cores on a single chip helped CPUs in running parts of a program in parallel. However, the utilization of huge parallelism available from many high performance applications and the corresponding data is hard to achieve from these general purpose multi-cores. Streaming accelerators and the corresponding programing models improve upon this situation by providing throughput oriented architectures. The basic idea behind the design of these architectures matches the everyday increasing requirements of processing huge data sets. These high-performance throughput oriented devices help in high performance processing of data by using efficient parallel computations and streaming based communications. The throughput oriented streaming accelerators ¿ similar to the other processors ¿ consist of numerous types of micro-architectural components including the memory structures, compute units, control units, I/O channels and I/O controls etc. However, the throughput requirements add some special features and impose other restrictions for the performance purposes. These devices, normally, offer a large number of compute resources but restrict the applications to arrange parallel and maximally independent data sets to feed the compute resources in the form of streams. The arrangement of data into independent sets of parallel streams is not an easy and simple task. It may need to change the structure of an algorithm as a whole or even it can require to write a new algorithm from scratch for the target application. However, all these efforts for the re-arrangement of application data access patterns may still not be very helpful to achieve the optimal performance. This is because of the possible micro-architectural constraints of the target platform for the hardware pre-fetching mechanisms, the size and the granularity of the local storage and the flexibility in data marshaling inside the local storage. The constraints of a general purpose streaming platform on the data pre-fetching, storing and maneuvering to arrange and maintain it in the form of parallel and independent streams could be removed by employing micro-architectural level design approaches. This includes the usage of application specific customized memories in the front-end of a streaming architecture. The focus of this thesis is to present architectural explorations for the streaming accelerators using customized memory layouts. In general the thesis covers three main aspects of such streaming accelerators in this research. These aspects can be categorized as : i) Design of Application Specific Accelerators with Customized Memory Layout ii) Template Based Design Support for Customized Memory Accelerators and iii) Design Space Explorations for Throughput Oriented Devices with Standard and Customized Memories. This thesis concludes with a conceptual proposal on a Blacksmith Streaming Architecture (BSArc). The Blacksmith Computing allow the hardware-level adoption of an application specific front-end with a GPU like streaming back-end. This gives an opportunity to exploit maximum possible data locality and the data level parallelism from an application while providing a throughput natured powerful back-end. We consider that the design of these specialized memory layouts for the front-end of the device are provided by the application domain experts in the form of templates. These templates are adjustable according to a device and the problem size at the device's configuration time. The physical availability of such an architecture may still take time. However, simulation framework helps in architectural explorations to give insight into the proposal and predicts potential performance benefits for such an architecture

Architectural explorations for streaming accelerators with customized memory layouts

El concepto básico de la arquitectura mono-nucleo en los procesadores de propósito general se ajusta bien a un modelo de programación secuencial. La integración de multiples núcleos en un solo chip ha permitido a los procesadores correr partes del programa en paralelo. Sin embargo, la explotación del enorme paralelismo disponible en muchas aplicaciones de alto rendimiento y de los datos correspondientes es difícil de conseguir usando unicamente multicores de propósito general. La aparición de aceleradores tipo streaming y de los correspondientes modelos de programación han mejorado esta situación proporcionando arquitecturas orientadas al proceso de flujos de datos. La idea básica detrás del diseño de estas arquitecturas responde a la necesidad de procesar conjuntos enormes de datos. Estos dispositivos de alto rendimiento orientados a flujos permiten el procesamiento rapido de datos mediante el uso eficiente de computación paralela y comunicación entre procesos. Los aceleradores streaming orientados a flujos, igual que en otros procesadores, consisten en diversos componentes micro-arquitectonicos como por ejemplo las estructuras de memoria, las unidades de computo, las unidades de control, los canales de Entrada/Salida y controles de Entrada/Salida, etc. Sin embargo, los requisitos del flujo de datos agregan algunas características especiales e imponen otras restricciones que afectan al rendimiento. Estos dispositivos, por lo general, ofrecen un gran número de recursos computacionales, pero obligan a reorganizar los conjuntos de datos en paralelo, maximizando la independiencia para alimentar los recursos de computación en forma de flujos. La disposición de datos en conjuntos independientes de flujos paralelos no es una tarea sencilla. Es posible que se tenga que cambiar la estructura de un algoritmo en su conjunto o, incluso, puede requerir la reescritura del algoritmo desde cero. Sin embargo, todos estos esfuerzos para la reordenación de los patrones de las aplicaciones de acceso a datos puede que no sean muy útiles para lograr un rendimiento óptimo. Esto es debido a las posibles limitaciones microarquitectonicas de la plataforma de destino para los mecanismos hardware de prefetch, el tamaño y la granularidad del almacenamiento local, y la flexibilidad para disponer de forma serial los datos en el interior del almacenamiento local. Las limitaciones de una plataforma de streaming de proposito general para el prefetching de datos, almacenamiento y demas procedimientos para organizar y mantener los datos en forma de flujos paralelos e independientes podría ser eliminado empleando técnicas a nivel micro-arquitectonico. Esto incluye el uso de memorias personalizadas especificamente para las aplicaciones en el front-end de una arquitectura streaming. El objetivo de esta tesis es presentar exploraciones arquitectónicas de los aceleradores streaming con diseños de memoria personalizados. En general, la tesis cubre tres aspectos principales de tales aceleradores. Estos aspectos se pueden clasificar como: i) Diseño de aceleradores de aplicaciones específicas con diseños de memoria personalizados, ii) diseño de aceleradores con memorias personalizadas basados en plantillas, y iii) exploraciones del espacio de diseño para dispositivos orientados a flujos con las memorias estándar y personalizadas. Esta tesis concluye con la propuesta conceptual de una Blacksmith Streaming Architecture (BSArc). El modelo de computación Blacksmith permite la adopción a nivel de hardware de un front-end de aplicación específico utilizando una GPU como back-end. Esto permite maximizar la explotación de la localidad de datos y el paralelismo a nivel de datos de una aplicación mientras que proporciona un flujo mayor de datos al back-end. Consideramos que el diseño de estos procesadores con memorias especializadas debe ser proporcionado por expertos del dominio de aplicación en la forma de plantillas.The basic concept behind the architecture of a general purpose CPU core conforms well to a serial programming model. The integration of more cores on a single chip helped CPUs in running parts of a program in parallel. However, the utilization of huge parallelism available from many high performance applications and the corresponding data is hard to achieve from these general purpose multi-cores. Streaming accelerators and the corresponding programing models improve upon this situation by providing throughput oriented architectures. The basic idea behind the design of these architectures matches the everyday increasing requirements of processing huge data sets. These high-performance throughput oriented devices help in high performance processing of data by using efficient parallel computations and streaming based communications. The throughput oriented streaming accelerators ¿ similar to the other processors ¿ consist of numerous types of micro-architectural components including the memory structures, compute units, control units, I/O channels and I/O controls etc. However, the throughput requirements add some special features and impose other restrictions for the performance purposes. These devices, normally, offer a large number of compute resources but restrict the applications to arrange parallel and maximally independent data sets to feed the compute resources in the form of streams. The arrangement of data into independent sets of parallel streams is not an easy and simple task. It may need to change the structure of an algorithm as a whole or even it can require to write a new algorithm from scratch for the target application. However, all these efforts for the re-arrangement of application data access patterns may still not be very helpful to achieve the optimal performance. This is because of the possible micro-architectural constraints of the target platform for the hardware pre-fetching mechanisms, the size and the granularity of the local storage and the flexibility in data marshaling inside the local storage. The constraints of a general purpose streaming platform on the data pre-fetching, storing and maneuvering to arrange and maintain it in the form of parallel and independent streams could be removed by employing micro-architectural level design approaches. This includes the usage of application specific customized memories in the front-end of a streaming architecture. The focus of this thesis is to present architectural explorations for the streaming accelerators using customized memory layouts. In general the thesis covers three main aspects of such streaming accelerators in this research. These aspects can be categorized as : i) Design of Application Specific Accelerators with Customized Memory Layout ii) Template Based Design Support for Customized Memory Accelerators and iii) Design Space Explorations for Throughput Oriented Devices with Standard and Customized Memories. This thesis concludes with a conceptual proposal on a Blacksmith Streaming Architecture (BSArc). The Blacksmith Computing allow the hardware-level adoption of an application specific front-end with a GPU like streaming back-end. This gives an opportunity to exploit maximum possible data locality and the data level parallelism from an application while providing a throughput natured powerful back-end. We consider that the design of these specialized memory layouts for the front-end of the device are provided by the application domain experts in the form of templates. These templates are adjustable according to a device and the problem size at the device's configuration time. The physical availability of such an architecture may still take time. However, simulation framework helps in architectural explorations to give insight into the proposal and predicts potential performance benefits for such an architecture.Postprint (published version

Real-Time Hardware-In-the-Loop Testing of IEC 61850 GOOSE based Logically Selective Adaptive Protection of AC Microgrid

The real-time (RT) hardware-in-the-loop (HIL) simulation-based testing is getting popular for power systems and power electronics applications. The HIL testing provides the interactive environment between the actual power system components like control and protection devices and simulated power system networks including different communication protocols. Therefore, the results of the RT simulation and HIL testing before the actual implementation in the field are generally more acceptable than offline simulations. This paper reviews the HIL testing methods and applications in the recent literature and presents a step-by-step documentation of a new HIL testing setup for a specific case study. The case study evaluates improved version of previously proposed communication-dependent logically selective adaptive protection algorithm of AC microgrids using the real-time HIL testing of IEC 61850 generic object-oriented substation event (GOOSE) protocol. The RT model of AC microgrid including the converter-based distributed energy resources and battery storage along with IEC 61850 GOOSE protocol implementation is created in MATLAB/Simulink and RT-LAB software using OPAL-RT simulator platform. The Ethernet switch acts as IEC 61850 station bus for exchanging GOOSE Boolean signals between the RT target and the actual digital relay. The evaluation of the round-trip delay using the RT simulation has been performed. It is found that the whole process of fault detection, isolation and adaptive setting using Ethernet communication is possible within the standard low voltage ride through curve maintaining the seamless transition to the islanded mode. The signal monitoring inside the relay is suggested to avoid false tripping of the relay.©2021 Institute of Electrical and Electronics Engineers. This work is licensed under a Creative Commons Attribution 4.0 License. For more information, see https://creativecommons.org/licenses/by/4.0/This work was mainly carried out in the SolarX research project funded by the Business Finland under Grant No. 6844/31/2018. Some part of this work was carried out during the VINPOWER research project funded by the European Regional Development Fund (ERDF), Project No. A73094. The financial support provided through these projects is greatly acknowledged.fi=vertaisarvioitu|en=peerReviewed

Reconfigurable computing for large-scale graph traversal algorithms

This thesis proposes a reconfigurable computing approach for supporting parallel processing in large-scale graph traversal algorithms. Our approach is based on a reconfigurable hardware architecture which exploits the capabilities of both FPGAs (Field-Programmable Gate Arrays) and a multi-bank parallel memory subsystem. The proposed methodology to accelerate graph traversal algorithms has been applied to three case studies, revealing that application-specific hardware customisations can benefit performance. A summary of our four contributions is as follows. First, a reconfigurable computing approach to accelerate large-scale graph traversal algorithms. We propose a reconfigurable hardware architecture which decouples computation and communication while keeping multiple memory requests in flight at any given time, taking advantage of the high bandwidth of multi-bank memory subsystems. Second, a demonstration of the effectiveness of our approach through two case studies: the breadth-first search algorithm, and a graphlet counting algorithm from bioinformatics. Both case studies involve graph traversal, but each of them adopts a different graph data representation. Third, a method for using on-chip memory resources in FPGAs to reduce off-chip memory accesses for accelerating graph traversal algorithms, through a case-study of the All-Pairs Shortest-Paths algorithm. This case study has been applied to process human brain network data. Fourth, an evaluation of an approach based on instruction-set extension for FPGA design against many-core GPUs (Graphics Processing Units), based on a set of benchmarks with different memory access characteristics. It is shown that while GPUs excel at streaming applications, the proposed approach can outperform GPUs in applications with poor locality characteristics, such as graph traversal problems.Open Acces