A Methodology Based on Bioacoustic Information for Automatic Identification of Reptiles and Anurans

Nowadays, human activity is considered one of the main risk factors for the life of reptiles and amphibians. The presence of these living beings represents a good biological indicator of an excellent environmental quality. Because of their behavior and size, most of these species are complicated to recognize in their living environment with image devices. Nevertheless, the use of bioacoustic information to identify animal species is an efficient way to sample populations and control the conservation of these living beings in large and remote areas where environmental conditions and visibility are limited. In this chapter, a novel methodology for the identification of different reptile and anuran species based on the fusion of Mel and Linear Frequency Cepstral Coefficients, MFCC and LFCC, is presented. The proposed methodology has been validated using public databases, and experimental results yielded an accuracy above 95% showing the efficiency of the proposal

Improving classification algorithms by considering score series in wireless acoustic sensor networks

The reduction in size, power consumption and price of many sensor devices has enabled the deployment of many sensor networks that can be used to monitor and control several aspects of various habitats. More specifically, the analysis of sounds has attracted a huge interest in urban and wildlife environments where the classification of the different signals has become a major issue. Various algorithms have been described for this purpose, a number of which frame the sound and classify these frames,while others take advantage of the sequential information embedded in a sound signal. In the paper, a new algorithm is proposed that, while maintaining the frame-classification advantages, adds a new phase that considers and classifies the score series derived after frame labelling. These score series are represented using cepstral coefficients and classified using standard machine-learning classifiers. The proposed algorithm has been applied to a dataset of anuran calls and its results compared to the performance obtained in previous experiments on sensor networks. The main outcome of our research is that the consideration of score series strongly outperforms other algorithms and attains outstanding performance despite the noisy background commonly encountered in this kind of application

WASIS - Identificação bioacústica de espécies baseada em múltiplos algoritmos de extração de descritores e de classificação

Orientador: Claudia Maria Bauzer MedeirosDissertação (mestrado) - Universidade Estadual de Campinas, Instituto de ComputaçãoResumo: A identificação automática de animais por meio de seus sons é um dos meios para realizar pesquisa em bioacústica. Este domínio de pesquisa fornece, por exemplo, métodos para o monitoramento de espécies raras e ameaçadas, análises de mudanças em comunidades ecológicas, ou meios para o estudo da função social de vocalizações no contexto comportamental. Mecanismos de identificação são tipicamente executados em dois estágios: extração de descritores e classificação. Ambos estágios apresentam desafios, tanto em ciência da computação quanto na bioacústica. A escolha de algoritmos de extração de descritores e técnicas de classificação eficientes é um desafio em qualquer sistema de reconhecimento de áudio, especialmente no domínio da bioacústica. Dada a grande variedade de grupos de animais estudados, algoritmos são adaptados a grupos específicos. Técnicas de classificação de áudio também são sensíveis aos descritores extraídos e condições associadas às gravações. Como resultado, muitos sistemas computacionais para bioacústica não são expansíveis, limitando os tipos de experimentos de reconhecimento que possam ser conduzidos. Baseado neste cenário, esta dissertação propõe uma arquitetura de software que acomode múltiplos algoritmos de extração de descritores, fusão entre descritores e algoritmos de classificação para auxiliar cientistas e o grande público na identificação de animais através de seus sons. Esta arquitetura foi implementada no software WASIS, gratuitamente disponível na Internet. Diversos algoritmos foram implementados, servindo como base para um estudo comparativo que recomenda conjuntos de algoritmos de extração de descritores e de classificação para três grupos de animaisAbstract: Automatic identification of animal species based on their sounds is one of the means to conduct research in bioacoustics. This research domain provides, for instance, ways to monitor rare and endangered species, to analyze changes in ecological communities, or ways to study the social meaning of the animal calls in the behavior context. Identification mechanisms are typically executed in two stages: feature extraction and classification. Both stages present challenges, in computer science and in bioacoustics. The choice of effective feature extraction and classification algorithms is a challenge on any audio recognition system, especially in bioacoustics. Considering the wide variety of animal groups studied, algorithms are tailored to specific groups. Classification techniques are also sensitive to the extracted features, and conditions surrounding the recordings. As a results, most bioacoustic softwares are not extensible, therefore limiting the kinds of recognition experiments that can be conducted. Given this scenario, this dissertation proposes a software architecture that allows multiple feature extraction, feature fusion and classification algorithms to support scientists and the general public on the identification of animal species through their recorded sounds. This architecture was implemented by the WASIS software, freely available on the Web. A number of algorithms were implemented, serving as the basis for a comparative study that recommends sets of feature extraction and classification algorithms for three animal groupsMestradoCiência da ComputaçãoMestre em Ciência da Computação132849/2015-12013/02219-0CNPQFAPES

Acoustic classification of Australian frogs for ecosystem survey

Novel bioacoustics signal processing techniques have been developed to classify frog vocalisations in both trophy and field recordings. The research is useful in helping ecologists monitor frog community activity and species richness over long-term. Two major contributions are the construction of novel feature descriptors in the Cepstral domain, and the design of novel classification systems for multiple simultaneously vocalising frog species

Detection of rain in acoustic recordings of the environment using machine learning techniques

This thesis is concerned with the detection and prediction of rain in environmental recordings using different machine learning algorithms. The results obtained in this research will help ecologists to efficiently analyse environmental data and monitor biodiversity

Automatic Recognition of Non-Verbal Acoustic Communication Events With Neural Networks

Non-verbal acoustic communication is of high importance to humans and animals: Infants use the voice as a primary communication tool. Animals of all kinds employ acoustic communication, such as chimpanzees, which use pant-hoot vocalizations for long-distance communication. Many applications require the assessment of such communication for a variety of analysis goals. Computational systems can support these areas through automatization of the assessment process. This is of particular importance in monitoring scenarios over large spatial and time scales, which are infeasible to perform manually. Algorithms for sound recognition have traditionally been based on conventional machine learning approaches. In recent years, so-called representation learning approaches have gained increasing popularity. This particularly includes deep learning approaches that feed raw data to deep neural networks. However, there remain open challenges in applying these approaches to automatic recognition of non-verbal acoustic communication events, such as compensating for small data set sizes. The leading question of this thesis is: How can we apply deep learning more effectively to automatic recognition of non-verbal acoustic communication events? The target communication types were specifically (1) infant vocalizations and (2) chimpanzee long-distance calls. This thesis comprises four studies that investigated aspects of this question: Study (A) investigated the assessment of infant vocalizations by laypersons. The central goal was to derive an infant vocalization classification scheme based on the laypersons' perception. The study method was based on the Nijmegen Protocol, where participants rated vocalization recordings through various items, such as affective ratings and class labels. Results showed a strong association between valence ratings and class labels, which was used to derive a classification scheme. Study (B) was a comparative study on various neural network types for the automatic classification of infant vocalizations. The goal was to determine the best performing network type among the currently most prevailing ones, while considering the influence of their architectural configuration. Results showed that convolutional neural networks outperformed recurrent neural networks and that the choice of the frequency and time aggregation layer inside the network is the most important architectural choice. Study (C) was a detailed investigation on computer vision-like convolutional neural networks for infant vocalization classification. The goal was to determine the most important architectural properties for increasing classification performance. Results confirmed the importance of the aggregation layer and additionally identified the input size of the fully-connected layers and the accumulated receptive field to be of major importance. Study (D) was an investigation on compensating class imbalance for chimpanzee call detection in naturalistic long-term recordings. The goal was to determine which compensation method among a selected group improved performance the most for a deep learning system. Results showed that spectrogram denoising was most effective, while methods for compensating relative imbalance either retained or decreased performance.:1. Introduction 2. Foundations in Automatic Recognition of Acoustic Communication 3. State of Research 4. Study (A): Investigation of the Assessment of Infant Vocalizations by Laypersons 5. Study (B): Comparison of Neural Network Types for Automatic Classification of Infant Vocalizations 6. Study (C): Detailed Investigation of CNNs for Automatic Classification of Infant Vocalizations 7. Study (D): Compensating Class Imbalance for Acoustic Chimpanzee Detection With Convolutional Recurrent Neural Networks 8. Conclusion and Collected Discussion 9. AppendixNonverbale akustische Kommunikation ist für Menschen und Tiere von großer Bedeutung: Säuglinge nutzen die Stimme als primäres Kommunikationsmittel. Schimpanse verwenden sogenannte 'Pant-hoots' und Trommeln zur Kommunikation über weite Entfernungen. Viele Anwendungen erfordern die Beurteilung solcher Kommunikation für verschiedenste Analyseziele. Algorithmen können solche Bereiche durch die Automatisierung der Beurteilung unterstützen. Dies ist besonders wichtig beim Monitoring langer Zeitspannen oder großer Gebiete, welche manuell nicht durchführbar sind. Algorithmen zur Geräuscherkennung verwendeten bisher größtenteils konventionelle Ansätzen des maschinellen Lernens. In den letzten Jahren hat eine alternative Herangehensweise Popularität gewonnen, das sogenannte Representation Learning. Dazu gehört insbesondere Deep Learning, bei dem Rohdaten in tiefe neuronale Netze eingespeist werden. Jedoch gibt es bei der Anwendung dieser Ansätze auf die automatische Erkennung von nonverbaler akustischer Kommunikation ungelöste Herausforderungen, wie z.B. die Kompensation der relativ kleinen Datenmengen. Die Leitfrage dieser Arbeit ist: Wie können wir Deep Learning effektiver zur automatischen Erkennung nonverbaler akustischer Kommunikation verwenden? Diese Arbeit konzentriert sich speziell auf zwei Kommunikationsarten: (1) vokale Laute von Säuglingen (2) Langstreckenrufe von Schimpansen. Diese Arbeit umfasst vier Studien, welche Aspekte dieser Frage untersuchen: Studie (A) untersuchte die Beurteilung von Säuglingslauten durch Laien. Zentrales Ziel war die Ableitung eines Klassifikationsschemas für Säuglingslaute auf der Grundlage der Wahrnehmung von Laien. Die Untersuchungsmethode basierte auf dem sogenannten Nijmegen-Protokoll. Hier beurteilten die Teilnehmenden Lautaufnahmen von Säuglingen anhand verschiedener Variablen, wie z.B. affektive Bewertungen und Klassenbezeichnungen. Die Ergebnisse zeigten eine starke Assoziation zwischen Valenzbewertungen und Klassenbezeichnungen, die zur Ableitung eines Klassifikationsschemas verwendet wurde. Studie (B) war eine vergleichende Studie verschiedener Typen neuronaler Netzwerke für die automatische Klassifizierung von Säuglingslauten. Ziel war es, den leistungsfähigsten Netzwerktyp unter den momentan verbreitetsten Typen zu ermitteln. Hierbei wurde der Einfluss verschiedener architektonischer Konfigurationen innerhalb der Typen berücksichtigt. Die Ergebnisse zeigten, dass Convolutional Neural Networks eine höhere Performance als Recurrent Neural Networks erreichten. Außerdem wurde gezeigt, dass die Wahl der Frequenz- und Zeitaggregationsschicht die wichtigste architektonische Entscheidung ist. Studie (C) war eine detaillierte Untersuchung von Computer Vision-ähnlichen Convolutional Neural Networks für die Klassifizierung von Säuglingslauten. Ziel war es, die wichtigsten architektonischen Eigenschaften zur Steigerung der Erkennungsperformance zu bestimmen. Die Ergebnisse bestätigten die Bedeutung der Aggregationsschicht. Zusätzlich Eigenschaften, die als wichtig identifiziert wurden, waren die Eingangsgröße der vollständig verbundenen Schichten und das akkumulierte rezeptive Feld. Studie (D) war eine Untersuchung zur Kompensation der Klassenimbalance zur Erkennung von Schimpansenrufen in Langzeitaufnahmen. Ziel war es, herauszufinden, welche Kompensationsmethode aus einer Menge ausgewählter Methoden die Performance eines Deep Learning Systems am meisten verbessert. Die Ergebnisse zeigten, dass Spektrogrammentrauschen am effektivsten war, während Methoden zur Kompensation des relativen Ungleichgewichts die Performance entweder gleichhielten oder verringerten.:1. Introduction 2. Foundations in Automatic Recognition of Acoustic Communication 3. State of Research 4. Study (A): Investigation of the Assessment of Infant Vocalizations by Laypersons 5. Study (B): Comparison of Neural Network Types for Automatic Classification of Infant Vocalizations 6. Study (C): Detailed Investigation of CNNs for Automatic Classification of Infant Vocalizations 7. Study (D): Compensating Class Imbalance for Acoustic Chimpanzee Detection With Convolutional Recurrent Neural Networks 8. Conclusion and Collected Discussion 9. Appendi

Proceedings of the 10th International Conference on Ecological Informatics: translating ecological data into knowledge and decisions in a rapidly changing world: ICEI 2018

The Conference Proceedings are an impressive display of the current scope of Ecological Informatics. Whilst Data Management, Analysis, Synthesis and Forecasting have been lasting popular themes over the past nine biannual ICEI conferences, ICEI 2018 addresses distinctively novel developments in Data Acquisition enabled by cutting edge in situ and remote sensing technology. The here presented ICEI 2018 abstracts captures well current trends and challenges of Ecological Informatics towards: • regional, continental and global sharing of ecological data, • thorough integration of complementing monitoring technologies including DNA-barcoding, • sophisticated pattern recognition by deep learning, • advanced exploration of valuable information in ‘big data’ by means of machine learning and process modelling, • decision-informing solutions for biodiversity conservation and sustainable ecosystem management in light of global changes