Comparative Study of Fingerprint Database Indexing Methods

International audienceNowadays, there are large country-sized fingerprint databases for identification purposes, for border access controls and also for Visa issuance procedures around the world. Fingerprint indexing techniques aim to speed up the research process in automatic fingerprint identification systems. Therefore, several preselection, classification and indexing techniques have been proposed in the literature. However, the proposed systems have been evaluated with different experimental protocols, that makes it difficult to assess their performances. The main objective of this paper is to provide a comparative study of fingerprint indexing methods using a common experimental protocol. Four fingerprint indexing methods, using naive, cascade, matcher and Minutiae Cylinder Code (MCC) approaches are evaluated on FVC databases from the Fingerprint Verification Competition (FVC) using the Cumulative Matches Curve (CMC) and for the first time using also the computing time required. Our study shows that MCC gives the best compromise between identification accuracy and computation time

Fingerprint Authentication System

Fingerprint is one of the most widely used biometric modality for recognition due to its reliability, non-invasive characteristic, speed and performance. The patterns remain stable throughout the lifetime of an individual. Attributable to these advantages, the application of Fingerprint biometric is increasingly encouraged by various commercial as well as government organizations. Fingerprint feature detection is to automatically and reliably extract minutiae from the input Fingerprint images. However, the performance of a minutiae extraction algorithm relies heavily on the quality of the input Fingerprint images. In order to ensure that the performance of an Fingerprint authentication system to be robust, it is essential to preprocessing Fingerprint image. This thesis describes steps involved during Fingerprint preprocessing, which improves the clarity of ridge and bifurcation structures of input Fingerprint images. After preprocessing minutiae are extracted and stored in database. Further an online Fingerprint authentication system is implemented in which elementary indexing strat- egy is used. Indexing Fingerprint data is done to identify and retrieve a small subset of candidate data from the database of Fingerprint data of individuals. Experimental work show that incorporating the online system, preprocessing algorithm, matching algorithm improves the overall response time

Indexing techniques for fingerprint and iris databases

This thesis addresses the problem of biometric indexing in the context of fingerprint and iris databases. In large scale authentication system, the goal is to determine the identity of a subject from a large set of identities. Indexing is a technique to reduce the number of candidate identities to be considered by the identification algorithm. The fingerprint indexing technique (for closed set identification) proposed in this thesis is based on a combination of minutiae and ridge features. Experiments conducted on the FVC2002 and FVC2004 databases indicate that the inclusion of ridge features aids in enhancing indexing performance. The thesis also proposes three techniques for iris indexing (for closed set identification). The first technique is based on iriscodes. The second technique utilizes local binary patterns in the iris texture. The third technique analyzes the iris texture based on a pixel-level difference histogram. The ability to perform indexing at the texture level avoids the computational complexity involved in encoding and is, therefore, more attractive for iris indexing. Experiments on the CASIA 3.0 database suggest the potential of these schemes to index large-scale iris databases

Universal Compressed Text Indexing

The rise of repetitive datasets has lately generated a lot of interest in compressed self-indexes based on dictionary compression, a rich and heterogeneous family that exploits text repetitions in different ways. For each such compression scheme, several different indexing solutions have been proposed in the last two decades. To date, the fastest indexes for repetitive texts are based on the run-length compressed Burrows-Wheeler transform and on the Compact Directed Acyclic Word Graph. The most space-efficient indexes, on the other hand, are based on the Lempel-Ziv parsing and on grammar compression. Indexes for more universal schemes such as collage systems and macro schemes have not yet been proposed. Very recently, Kempa and Prezza [STOC 2018] showed that all dictionary compressors can be interpreted as approximation algorithms for the smallest string attractor, that is, a set of text positions capturing all distinct substrings. Starting from this observation, in this paper we develop the first universal compressed self-index, that is, the first indexing data structure based on string attractors, which can therefore be built on top of any dictionary-compressed text representation. Let $\gamma$ be the size of a string attractor for a text of length $n$. Our index takes $O(\gamma\log(n/\gamma))$ words of space and supports locating the $occ$ occurrences of any pattern of length $m$ in $O(m\log n + occ\log^{\epsilon}n)$ time, for any constant $\epsilon>0$. This is, in particular, the first index for general macro schemes and collage systems. Our result shows that the relation between indexing and compression is much deeper than what was previously thought: the simple property standing at the core of all dictionary compressors is sufficient to support fast indexed queries.Comment: Fixed with reviewer's comment

A resource-frugal probabilistic dictionary and applications in (meta)genomics

Genomic and metagenomic fields, generating huge sets of short genomic sequences, brought their own share of high performance problems. To extract relevant pieces of information from the huge data sets generated by current sequencing techniques, one must rely on extremely scalable methods and solutions. Indexing billions of objects is a task considered too expensive while being a fundamental need in this field. In this paper we propose a straightforward indexing structure that scales to billions of element and we propose two direct applications in genomics and metagenomics. We show that our proposal solves problem instances for which no other known solution scales-up. We believe that many tools and applications could benefit from either the fundamental data structure we provide or from the applications developed from this structure.Comment: Submitted to PSC 201

String Indexing with Compressed Patterns

Given a string S of length n, the classic string indexing problem is to preprocess S into a compact data structure that supports efficient subsequent pattern queries. In this paper we consider the basic variant where the pattern is given in compressed form and the goal is to achieve query time that is fast in terms of the compressed size of the pattern. This captures the common client-server scenario, where a client submits a query and communicates it in compressed form to a server. Instead of the server decompressing the query before processing it, we consider how to efficiently process the compressed query directly. Our main result is a novel linear space data structure that achieves near-optimal query time for patterns compressed with the classic Lempel-Ziv 1977 (LZ77) compression scheme. Along the way we develop several data structural techniques of independent interest, including a novel data structure that compactly encodes all LZ77 compressed suffixes of a string in linear space and a general decomposition of tries that reduces the search time from logarithmic in the size of the trie to logarithmic in the length of the pattern