Introducing PHAEDRA: a new spectral code for simulations of relativistic magnetospheres

We describe a new scheme for evolving the equations of force-free electrodynamics, the vanishing-inertia limit of magnetohydrodynamics. This pseudospectral code uses global orthogonal basis function expansions to take accurate spatial derivatives, allowing the use of an unstaggered mesh and the complete force-free current density. The method has low numerical dissipation and diffusion outside of singular current sheets. We present a range of one- and two-dimensional tests, and demonstrate convergence to both smooth and discontinuous analytic solutions. As a first application, we revisit the aligned rotator problem, obtaining a steady solution with resistivity localised in the equatorial current sheet outside the light cylinder.Comment: 23 pages, 18 figures, accepted for publication in MNRA

Segregated Runge–Kutta time integration of convection-stabilized mixed finite element schemes for wall-unresolved LES of incompressible flows

In this work, we develop a high-performance numerical framework for the large eddy simulation (LES) of incompressible flows. The spatial discretization of the nonlinear system is carried out using mixed finite element (FE) schemes supplemented with symmetric projection stabilization of the convective term and a penalty term for the divergence constraint. These additional terms introduced at the discrete level have been proved to act as implicit LES models. In order to perform meaningful wall-unresolved simulations, we consider a weak imposition of the boundary conditions using a Nitsche’s-type scheme, where the tangential component penalty term is designed to act as a wall law. Next, segregated Runge–Kutta (SRK) schemes (recently proposed by the authors for laminar flow problems) are applied to the LES simulation of turbulent flows. By the introduction of a penalty term on the trace of the acceleration, these methods exhibit excellent stability properties for both implicit and explicit treatment of the convective terms. SRK schemes are excellent for large-scale simulations, since they reduce the computational cost of the linear system solves by splitting velocity and pressure computations at the time integration level, leading to two uncoupled systems. The pressure system is a Darcy-type problem that can easily be preconditioned using a traditional block-preconditioning scheme that only requires a Poisson solver. At the end, only coercive systems have to be solved, which can be effectively preconditioned by multilevel domain decomposition schemes, which are both optimal and scalable. The framework is applied to the Taylor–Green and turbulent channel flow benchmarks in order to prove the accuracy of the convection-stabilized mixed FEs as LES models and SRK time integrators. The scalability of the preconditioning techniques (in space only) has also been proven for one step of the SRK scheme for the Taylor–Green flow using uniform meshes. Moreover, a turbulent flow around a NACA profile is solved to show the applicability of the proposed algorithms for a realistic problem.Peer ReviewedPostprint (author's final draft

Simulation of flows with violent free surface motion and moving objects using unstructured grids

This is the peer reviewed version of the following article: [Löhner, R. , Yang, C. and Oñate, E. (2007), Simulation of flows with violent free surface motion and moving objects using unstructured grids. Int. J. Numer. Meth. Fluids, 53: 1315-1338. doi:10.1002/fld.1244], which has been published in final form at https://doi.org/10.1002/fld.1244. This article may be used for non-commercial purposes in accordance with Wiley Terms and Conditions for Self-Archiving.A volume of fluid (VOF) technique has been developed and coupled with an incompressible Euler/Navier–Stokes solver operating on adaptive, unstructured grids to simulate the interactions of extreme waves and three-dimensional structures. The present implementation follows the classic VOF implementation for the liquid–gas system, considering only the liquid phase. Extrapolation algorithms are used to obtain velocities and pressure in the gas region near the free surface. The VOF technique is validated against the classic dam-break problem, as well as series of 2D sloshing experiments and results from SPH calculations. These and a series of other examples demonstrate that the ability of the present approach to simulate violent free surface flows with strong nonlinear behaviour.Peer ReviewedPostprint (author's final draft

A Low Mach Number Solver: Enhancing Applicability

In astrophysics and meteorology there exist numerous situations where flows exhibit small velocities compared to the sound speed. To overcome the stringent timestep restrictions posed by the predominantly used explicit methods for integration in time the Euler (or Navier-Stokes) equations are usually replaced by modified versions. In astrophysics this is nearly exclusively the anelastic approximation. Kwatra et al. have proposed a method with favourable time-step properties integrating the original equations (and thus allowing, for example, also the treatment of shocks). We describe the extension of the method to the Navier-Stokes and two-component equations. - However, when applying the extended method to problems in convection and double diffusive convection (semiconvection) we ran into numerical difficulties. We describe our procedure for stabilizing the method. We also investigate the behaviour of Kwatra et al.'s method for very low Mach numbers (down to Ma = 0.001) and point out its very favourable properties in this realm for situations where the explicit counterpart of this method returns absolutely unusable results. Furthermore, we show that the method strongly scales over 3 orders of magnitude of processor cores and is limited only by the specific network structure of the high performance computer we use.Comment: author's accepted version at Elsevier,JCP; 42 pages, 14 figure

Finite element modeling of free surface flow in variable porosity media

The aim of the present work is to present an overview of some numerical procedures for the simulation of free surface flows within a porous structure. A particular algorithm developed by the authors for solving this type of problems is presented. A modified form of the classical Navier–Stokes equations is proposed, with the principal aim of simulating in a unified way the seepage flow inside rockfill-like porous material and the free surface flow in the clear fluid region. The problem is solved using a semi-explicit stabilized fractional step algorithm where velocity is calculated using a 4th order Runge–Kutta scheme. The numerical formulation is developed in an Eulerian framework using a level set technique to track the evolution of the free surface. An edge-based data structure is employed to allow an easy OpenMP parallelization of the resulting finite element code. The numerical model is validated against laboratory experiments on small scale rockfill dams and is compared with other existing methods for solving similar problems.Peer ReviewedPostprint (author’s final draft

A fast immersed boundary method for external incompressible viscous flows using lattice Green's functions

A new parallel, computationally efficient immersed boundary method for solving three-dimensional, viscous, incompressible flows on unbounded domains is presented. Immersed surfaces with prescribed motions are generated using the interpolation and regularization operators obtained from the discrete delta function approach of the original (Peskin's) immersed boundary method. Unlike Peskin's method, boundary forces are regarded as Lagrange multipliers that are used to satisfy the no-slip condition. The incompressible Navier-Stokes equations are discretized on an unbounded staggered Cartesian grid and are solved in a finite number of operations using lattice Green's function techniques. These techniques are used to automatically enforce the natural free-space boundary conditions and to implement a novel block-wise adaptive grid that significantly reduces the run-time cost of solutions by limiting operations to grid cells in the immediate vicinity and near-wake region of the immersed surface. These techniques also enable the construction of practical discrete viscous integrating factors that are used in combination with specialized half-explicit Runge-Kutta schemes to accurately and efficiently solve the differential algebraic equations describing the discrete momentum equation, incompressibility constraint, and no-slip constraint. Linear systems of equations resulting from the time integration scheme are efficiently solved using an approximation-free nested projection technique. The algebraic properties of the discrete operators are used to reduce projection steps to simple discrete elliptic problems, e.g. discrete Poisson problems, that are compatible with recent parallel fast multipole methods for difference equations. Numerical experiments on low-aspect-ratio flat plates and spheres at Reynolds numbers up to 3,700 are used to verify the accuracy and physical fidelity of the formulation.Comment: 32 pages, 9 figures; preprint submitted to Journal of Computational Physic

Accelerating moderately stiff chemical kinetics in reactive-flow simulations using GPUs

The chemical kinetics ODEs arising from operator-split reactive-flow simulations were solved on GPUs using explicit integration algorithms. Nonstiff chemical kinetics of a hydrogen oxidation mechanism (9 species and 38 irreversible reactions) were computed using the explicit fifth-order Runge-Kutta-Cash-Karp method, and the GPU-accelerated version performed faster than single- and six-core CPU versions by factors of 126 and 25, respectively, for 524,288 ODEs. Moderately stiff kinetics, represented with mechanisms for hydrogen/carbon-monoxide (13 species and 54 irreversible reactions) and methane (53 species and 634 irreversible reactions) oxidation, were computed using the stabilized explicit second-order Runge-Kutta-Chebyshev (RKC) algorithm. The GPU-based RKC implementation demonstrated an increase in performance of nearly 59 and 10 times, for problem sizes consisting of 262,144 ODEs and larger, than the single- and six-core CPU-based RKC algorithms using the hydrogen/carbon-monoxide mechanism. With the methane mechanism, RKC-GPU performed more than 65 and 11 times faster, for problem sizes consisting of 131,072 ODEs and larger, than the single- and six-core RKC-CPU versions, and up to 57 times faster than the six-core CPU-based implicit VODE algorithm on 65,536 ODEs. In the presence of more severe stiffness, such as ethylene oxidation (111 species and 1566 irreversible reactions), RKC-GPU performed more than 17 times faster than RKC-CPU on six cores for 32,768 ODEs and larger, and at best 4.5 times faster than VODE on six CPU cores for 65,536 ODEs. With a larger time step size, RKC-GPU performed at best 2.5 times slower than six-core VODE for 8192 ODEs and larger. Therefore, the need for developing new strategies for integrating stiff chemistry on GPUs was discussed.Comment: 27 pages, LaTeX; corrected typos in Appendix equations A.10 and A.1