The model of an anomaly detector for HiLumi LHC magnets based on Recurrent Neural Networks and adaptive quantization

This paper focuses on an examination of an applicability of Recurrent Neural Network models for detecting anomalous behavior of the CERN superconducting magnets. In order to conduct the experiments, the authors designed and implemented an adaptive signal quantization algorithm and a custom GRU-based detector and developed a method for the detector parameters selection. Three different datasets were used for testing the detector. Two artificially generated datasets were used to assess the raw performance of the system whereas the 231 MB dataset composed of the signals acquired from HiLumi magnets was intended for real-life experiments and model training. Several different setups of the developed anomaly detection system were evaluated and compared with state-of-the-art OC-SVM reference model operating on the same data. The OC-SVM model was equipped with a rich set of feature extractors accounting for a range of the input signal properties. It was determined in the course of the experiments that the detector, along with its supporting design methodology, reaches F1 equal or very close to 1 for almost all test sets. Due to the profile of the data, the best_length setup of the detector turned out to perform the best among all five tested configuration schemes of the detection system. The quantization parameters have the biggest impact on the overall performance of the detector with the best values of input/output grid equal to 16 and 8, respectively. The proposed solution of the detection significantly outperformed OC-SVM-based detector in most of the cases, with much more stable performance across all the datasets.Comment: Related to arXiv:1702.0083

Criteria for a recommended standard

"Standard designed to protect the health and safety of employees exposed to ethylene-glycol-monobutyl-ether (111762) (EGBE) and ethylene-glycol-monobutyl-ether-acetate (112072) (EBGEA) by reducing those exposures to not more than 5 parts per million. The document contains information on recommended exposure limits for EGBE and EGBEA, exposure monitoring, medical monitoring, labeling and posting, protective clothing and equipment, informing workers about the hazards of EGBE and EGBEA, engineering controls and work practices, sanitation and hygiene, recordkeeping, chemical and physical properties of the substances, production methods and uses, number of workers potentially exposed, effects on humans, metabolism, elimination, effects on animals (hematologic effects, reproductive effects, carcinogenicity, mutagenicity, cytotoxicity), environmental sampling, analytical methods, correlation of effects and exposure, work practices (worker isolation, storage and handling, sanitation and hygiene), and spills and waste disposal." - NIOSHTIC-2"September 1990."Also available via the World Wide Web.Includes bibliographical references (p. 133-158)

Examination of the relationship between essential genes in PPI network and hub proteins in reverse nearest neighbor topology

Abstract Background In many protein-protein interaction (PPI) networks, densely connected hub proteins are more likely to be essential proteins. This is referred to as the "centrality-lethality rule", which indicates that the topological placement of a protein in PPI network is connected with its biological essentiality. Though such connections are observed in many PPI networks, the underlying topological properties for these connections are not yet clearly understood. Some suggested putative connections are the involvement of essential proteins in the maintenance of overall network connections, or that they play a role in essential protein clusters. In this work, we have attempted to examine the placement of essential proteins and the network topology from a different perspective by determining the correlation of protein essentiality and reverse nearest neighbor topology (RNN). Results The RNN topology is a weighted directed graph derived from PPI network, and it is a natural representation of the topological dependences between proteins within the PPI network. Similar to the original PPI network, we have observed that essential proteins tend to be hub proteins in RNN topology. Additionally, essential genes are enriched in clusters containing many hub proteins in RNN topology (RNN protein clusters). Based on these two properties of essential genes in RNN topology, we have proposed a new measure; the RNN cluster centrality. Results from a variety of PPI networks demonstrate that RNN cluster centrality outperforms other centrality measures with regard to the proportion of selected proteins that are essential proteins. We also investigated the biological importance of RNN clusters. Conclusions This study reveals that RNN cluster centrality provides the best correlation of protein essentiality and placement of proteins in PPI network. Additionally, merged RNN clusters were found to be topologically important in that essential proteins are significantly enriched in RNN clusters, and biologically important because they play an important role in many Gene Ontology (GO) processes.http://deepblue.lib.umich.edu/bitstream/2027.42/78257/1/1471-2105-11-505.xmlhttp://deepblue.lib.umich.edu/bitstream/2027.42/78257/2/1471-2105-11-505-S1.DOChttp://deepblue.lib.umich.edu/bitstream/2027.42/78257/3/1471-2105-11-505.pdfPeer Reviewe

Optical techniques for 3D surface reconstruction in computer-assisted laparoscopic surgery

One of the main challenges for computer-assisted surgery (CAS) is to determine the intra-opera- tive morphology and motion of soft-tissues. This information is prerequisite to the registration of multi-modal patient-specific data for enhancing the surgeon’s navigation capabilites by observ- ing beyond exposed tissue surfaces and for providing intelligent control of robotic-assisted in- struments. In minimally invasive surgery (MIS), optical techniques are an increasingly attractive approach for in vivo 3D reconstruction of the soft-tissue surface geometry. This paper reviews the state-of-the-art methods for optical intra-operative 3D reconstruction in laparoscopic surgery and discusses the technical challenges and future perspectives towards clinical translation. With the recent paradigm shift of surgical practice towards MIS and new developments in 3D opti- cal imaging, this is a timely discussion about technologies that could facilitate complex CAS procedures in dynamic and deformable anatomical regions

Nuclear Physics for Cultural Heritage

Nuclear physics applications in medicine and energy are well known and widely reported. Less well known are the many important nuclear and related techniques used for the study, characterization, assessment and preservation of cultural heritage. There has been enormous progress in this field in recent years and the current review aims to provide the public with a popular and accessible account of this work. The Nuclear Physics Division of the EPS represents scientists from all branches of nuclear physics across Europe. One of its aims is the dissemination of knowledge about nuclear physics and its applications. This review is led by Division board member Anna Macková, Head of the Tandetron Laboratory at the Nuclear Physics Institute of the Czech Academy of Sciences, and the review committee includes four other members of the nuclear physics board interested in this area: Faiçal Azaiez, Johan Nyberg, Eli Piasetzky and Douglas MacGregor. To create a truly authoritative account, the Scientific Editors have invited contributions from leading experts across Europe, and this publication is the combined result of their work. The review is extensively illustrated with important discoveries and examples from archaeology, pre-history, history, geography, culture, religion and curation, which underline the breadth and importance of this field. The large number of groups and laboratories working in the study and preservation of cultural heritage across Europe indicate the enormous effort and importance attached by society to this activity

A practical protocol for the experimental design of comparative studies on water treatment

The design and execution of effective and informative experiments in comparative studies on water treatment is challenging due to their complexity and multidisciplinarity. Often, environmental engineers and researchers carefully set up their experiments based on literature information, available equipment and time, analytical methods and experimental operations. However, because of time constraints but mainly missing insight, they overlook the value of preliminary experiments, as well as statistical and modeling techniques in experimental design. In this paper, the crucial roles of these overlooked techniques are highlighted in a practical protocol with a focus on comparative studies on water treatment optimization. By integrating a detailed experimental design, lab experiment execution, and advanced data analysis, more relevant conclusions and recommendations are likely to be delivered, hence, we can maximize the outputs of these precious and numerous experiments. The protocol underlines the crucial role of three key steps, including preliminary study, predictive modeling, and statistical analysis, which are strongly recommended to avoid suboptimal designs and even the failure of experiments, leading to wasted resources and disappointing results. The applicability and relevance of this protocol is demonstrated in a case study comparing the performance of conventional activated sludge and waste stabilization ponds in a shock load scenario. From that, it is advised that in the experimental design, the aim is to make best possible use of the statistical and modeling tools but not lose sight of a scientific understanding of the water treatment processes and practical feasibility