271 research outputs found

    Conference on Binary Optics: An Opportunity for Technical Exchange

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    The papers herein were presented at the Conference on Binary Optics held in Huntsville, AL, February 23-25, 1993. The papers were presented according to subject as follows: modeling and design, fabrication, and applications. Invited papers and tutorial viewgraphs presented on these subjects are included

    Magnetic components and microfluidics optimization on a Lab-on-a-chip platform

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    Tese de mestrado integrado, Engenharia Biomédica e Biofísica (Sinais e Imagens Médicas), Universidade de Lisboa, Faculdade de Ciências, 2017Desde 1934, quando Moldovan criou o primeiro instrumento que poderia ser descrito como um citómetro de fluxo, este equipamento tornou-se um importante componente em várias especialidades dentro do laboratório clínico para o diagnóstico, prognóstico e monitorização de um número incontável de doenças. Esta tecnologia biofísica suspende entidades biológicas num fluxo de fluido, sinalizando-as usando reconhecimento biomolecular, para depois as detetar através de um aparelho de detecção eletrónica. Com o crescimento das técnicas de fabricação de semicondutores e microfluídos, foram e continuam a ser feitas muitas tentativas de criar citómetros de fluxo do tipo Lab-on-a-Chip (LOC), o que certamente irá afastar os equipamentos usados hoje me dia nos laboratórios por equipamentos usados in situ de custo e tamanho reduzidos, portáteis e sem necessidade de pessoal especializado. Após uma revisão bibliográfica das técnicas e princípios de funcionamento dos equipamentos já existentes foi possível perceber que a utilização de partículas magnéticas (PM) pode ter várias vantagens quando comparadas com o uso convencional de deteção por fluorescência, removendo assim a necessidade de integrar e alinhar componentes ópticos, permitindo uma medição direta e a construção de um citómetro de fluxo LOC com preparação, separação e deteção de amostras totalmente magnético. No INESC-MN foi feito um protótipo que permite a deteção de um tipo de PMs em tempo real a velocidades da ordem de cm/s usando sensores magnetoresistivos integrados em canais microfluídicos mas a primeira demonstração desta técnica para aplicações de citómetro foi realizada através da detecção de células Kg1-a marcadas com PMs de 50 nm que passaram, através de um canal microfluídico, sobre 3 sensores magnetoresistivos demonstrando que, para amostras de elevada concentração, pode ter a mesma eficiência que um hemocitómetro, mas com menor erro. Tendo como ambição um dispositivo LOC capaz de contar várias entidades biológicas na mesma amostra, um módulo de contagem com vários canais paralelos é necessário. Nesse sentido, foi projetado um novo chip com 4 colunas separadas por 3 mm, cada uma com 7 sensores do tipo válvula de spin (SV) com uma área de deteção de 100x4 μm2 distanciados 150 μm uns dos outros. Os sensores são abordados individualmente por uma linha de corrente de alumínio de 300 nm e passivados com 300 nm de nitreto de silicio. Alinhados com as colunas de sensores, 4 canais de polydimethylsiloxane (PDMS) com uma secção de 20 μm de altura e 100 μm de largura foram irreversivelmente colados ao chip por ultravioleta-ozono (UVO) criando o canal onde a amostra irá fluir. Para que as PMs sinalizem a sua passagem é necessário colocá-las sob um campo magnético forte o suficiente para induzir a sua magnetização e para que, consequentemente, as PMs emanem um campo marginal significativo. Aproveitando a insensibilidade das SVs às componentes perpendiculares ao seu plano (xy), aplica-se um campo magnético nesse sentido (z) para magnetizar as partículas. As PMs ao passarem sobre o sensor geraram um sinal bipolar devido ao campo marginal criado pela sua magnetização perpendicular. Como é apresentado na simulação do sinal, a amplitude do mesmo depende apenas da altura da partícula em relação ao sensor e da magnetização das mesmas, idealmente, uma saturação da magnetização das partículas e o máximo de proximidade aos sensores geraria a maior amplitude possível. O campo magnético perpendicular foi criado usando um magnete de neodímio posicionado sob a placa de circuito impresso (PCB), onde o chip do citómetro é colado e as ligações entre o chip e a PCB soldadas por ultrassons com fio de alumínio. Na abordagem usada em Loureiro et al., 2011, um magnete de 20 mm x 10 mm x 1 mm foi simplesmente colado sob a PCB, mas devido aos campos magnéticos serem sempre fechados as componentes x e y criam desvios nas curvas de transferência dos sensores deixando apenas 1 ou 2 sensores de uma coluna do chip operacionais. Numa abordagem seguinte foi usado um magnete 20 mm x 20 mm x 3 mm distanciado 2 cm abaixo da PCB, isto tornou as curvas de transferência dos sensores adequadas para medição, mas fez com que a componente z do campo magnético não fosse grande o suficiente para que as PMs emanassem um campo magnético suficientemente forte. Percebendo as falhas de cada uma das configurações anteriores, foram feitas simulações do campo magnético que iria influenciar o chip originado por magnetes de vários tamanhos a várias distancias para perceber qual conseguiria fornecer uma maior área em que as componentes x e y fossem menores que 10 Oe e em que a componente z fosse de pelo menos 1 kOe. Através das simulações foi concluído que o magnete de 20 mm x 10 mm x 1 mm o mais próximo possível do chip seria a melhor solução, mas que um alinhamento preciso seria necessário. Para esse fim, foi fabricado numa fresadora um sistema de alinhamento em PMMA. Para que o alinhamento fosse o correto foram feitos 4 furos de alinhamento no sistema de PMMA e na PCB e para reduzir a distancia ao máximo foi feita uma bolsa na PCB da mesma área que o chip deixando a distancia do magnete aos sensores de 1 mm (0.3 mm de PCB + 0.7 mm de substrato de silício). Com isto, o alinhamento em x foi conseguido, mas para alinhar em y foi criado um trilho no sistema de PMMA onde o magnete pudesse deslizar, controlando-o pela rotação de um parafuso com passo de 0.5 mm. Para colocar o magnete na posição ideal, foi medida consecutivamente a curva de transferência do 4º sensor de uma das colunas, num campo magnético de -141 Oe a 141 Oe, até que este tivesse um campo de acoplamento efectivo (Hf) de aproximadamente 0 Oe, o que significa que a curva de transferência estaria perfeitamente centrada em zero e criaria um sinal bipolar perfeito. Após o alinhamento e posicionamento do magnete, todos os sensores foram caracterizados e, nesses resultados, podemos ver perfeitamente o efeito das componentes x e y do magnete. Com o lado longo do magnete paralelo ao lado longo das SVs e alinhado de forma que o Hf fosse o mais próximo de 0 Oe no 4º sensor de uma coluna, percebemos que a componente x (lado longo) do campo magnético criado pelo magnete tem efeitos na sensibilidade dos sensores fazendo com que esta caia à medida que nos afastamos do centro do magnete. Enquanto que a componente y tem efeitos sobre o Hf dos sensores tornando-o mais positivo à medida que medimos a 3ª, 2ª e 1ª linha de sensores e tornando-o mais negativo quando medimos a 5ª, 6ª e 7ª linha. São também apresentadas simulações dos canais microfluídicos para perceber como a velocidade das partículas afeta o sinal e qual a velocidade máxima permitida para que placa de aquisição eletrónica seja capaz de o detetar. Com estas conclusões, um novo chip foi desenhado e fabricado. Neste novo chip a distância entre as colunas de SVs foi reduzida para apenas 1 mm, o que obrigou também à alteração dos canais microfluídicos, ao tamanho do chip e da estrutura de PDMS. Também são apresentadas simulações que mostram que se um segundo magnete, alinhado com o primeiro, for colocado sobre os canais microfluídicos poderá melhorar a magnetização e a homogeneidade do campo, o que permitirá que os 4 canais tenham a mesma sensibilidade e um desvio padrão de Hf menor. Todos os antecedentes teóricos, os métodos de microfabricação e técnicas de caracterização usados são apresentados e descritos.The diagnosis, prognosis and monitoring of diseases serves for the only purpose of preserving and improving life. Being this the greatest objective of the human kind, since ever that efforts have been made to better our ways to do that. One of those, a very important component in several specialties within the clinical laboratory is the flow cytometer, a biophysical technology which uses biomolecular recognition to sort and count biological entities by suspending them in a stream of fluid and detecting them through an electronic detection apparatus. The improvement of the semiconductor and microfluidic fabrication techniques have created the chance to bring the expensive, specialized and bulky equipment out of the laboratories and generate new machines able of having the same efficiency but with smaller price, size, allowing portability and removing the need for specialized personnel. This is the concept behind the next generation of in pointof- care apparatus, the La-on-a-Chip (LOC). At INESC-MN it is understood the potential that magnetic particles (MP) have in a LOC flow cytometer and as such a real-time detection of single magnetic particles magnetoresistive based cytometer was prototyped. Demonstration of this technique for cytometer applications was accomplished by indicating that for high concentration samples it can have the same efficiency as the hemocytometer method but with lesser error. This thesis has as objective the optimization of the magnetic and microfluidic components of a LOC to allow the parallelization of measurements and enabling the real-time measurement of different particles at the same time. For this purpose, a bibliographic review of the theoretical backgrounds, of the fabrication and characterization techniques, of the different detecting principles and of the already existing magnetoresistive counting modules was made to get a deeper understanding of the optimization possibilities. The present work describes the above-mentioned platform for dynamic detection of magnetic labels with a magnetoresistive based flow cytometer, where a permanent magnet is used to magnetize the labels enabling them to trigger the sensor. Several simulations of the magnetic fields created by the permanent magnet and the microfluidic channels were done and analyzed in order to characterize the MPs signal, understand which would be the best positioning of these components and which fluid velocities would be in the range of the electronic read-out capabilities. This study led to the fabrication of a micromachined polymethylmethacrylate (PMMA) alignment system to correctly position the permanent magnet under the cytometer’s chip. This made the control over the magnet’s positioning more sensible and thus reducing the influence of its unwanted magnetic components on the chip. The approximation of the magnet to the chip enhanced the signal by optimizing the MPs magnetization and consequently the signal amplitude, the precise alignment corrected the sensors response by improving its sensitivity and removing them from saturation states. Through this new setup all the sensors in the chip became operational. Finally, using the several techniques of microfabrication also describe in this thesis, a new chip was designed and fabricated to improve even more the sensors sensitivity and consequently augment the number of the cytometer’s counting channels

    Hydrogel-based logic circuits for planar microfluidics and lab-on-a-chip automation

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    The transport of vital nutrient supply in fluids as well as the exchange of specific chemical signals from cell to cell has been optimized over billion years of natural evolution. This model from nature is a driving factor in the field of microfluidics, which investigates the manipulation of the smallest amounts of fluid with the aim of applying these effects in fluidic microsystems for technical solutions. Currently, microfluidic systems are receiving attention, especially in diagnostics, \textit{e.g.} as SARS-CoV-2 antigen tests, or in the field of high-throughput analysis, \textit{e.g.} for cancer research. Either simple-to-use or large-scale integrated microfluidic systems that perform biological and chemical laboratory investigations on a so called Lab-on-a-Chip (LoC) provide fast analysis, high functionality, outstanding reproducibility at low cost per sample, and small demand of reagents due to system miniaturization. Despite the great progress of different LoC technology platforms in the last 30 years, there is still a lack of standardized microfluidic components, as well as a high-performance, fully integrated on-chip automation. Quite promising for the microfluidic system design is the similarity of the Kirchhoff's laws from electronics to predict pressure and flow rate in microchannel structures. One specific LoC platform technology approach controls fluids by active polymers which respond to specific physical and chemical signals in the fluid. Analogue to (micro-)electronics, these active polymer materials can be realized by various photolithographic and micro patterning methods to generate functional elements at high scalability. The so called chemofluidic circuits have a high-functional potential and provide “real” on-chip automation, but are complex in system design. In this work, an advanced circuit concept for the planar microfluidic chip architecture, originating from the early era of the semiconductor-based resistor-transistor-logic (RTL) will be presented. Beginning with the state of the art of microfluidic technologies, materials, and methods of this work will be further described. Then the preferred fabrication technology is evaluated and various microfluidic components are discussed in function and design. The most important component to be characterized is the hydrogel-based chemical volume phase transition transistor (CVPT) which is the key to approach microfluidic logic gate operations. This circuit concept (CVPT-RTL) is robust and simple in design, feasible with common materials and manufacturing techniques. Finally, application scenarios for the CVPT-RTL concept are presented and further development recommendations are proposed.:1 The transistor: invention of the 20th century 2 Introduction to fluidic microsystems and the theoretical basics 2.1 Fluidic systems at the microscale 2.2 Overview of microfluidic chip fabrication 2.2.1 Common substrate materials for fluidic microsystems 2.2.2 Structuring polymer substrates for microfluidics 2.2.3 Polymer chip bonding technologies 2.3 Fundamentals and microfluidic transport processes 2.3.1 Fluid dynamics in miniaturized systems 2.3.2 Hagen-Poiseuille law: the fluidic resistance 2.3.3 Electronic and microfluidic circuit model analogy 2.3.4 Limits of the electro-fluidic analogy 2.4 Active components for microfluidic control 2.4.1 Fluid transport by integrated micropumps 2.4.2 Controlling fluids by on-chip microvalves 2.4.3 Hydrogel-based microvalve archetypes 2.5 LoC technologies: lost in translation? 2.6 Microfluidic platforms providing logic operations 2.6.1 Hybrids: MEMS-based logic concepts 2.6.2 Intrinsic logic operators for microfluidic circuits 2.7 Research objective: microfluidic hydrogel-based logic circuits 3 Stimuli-responsive polymers for microfluidics 3.1 Introduction to hydrogels 3.1.1 Application variety of hydrogels 3.1.2 Hydrogel microstructuring methods 3.2 Theory: stimuli-responsive hydrogels 3.3 PNIPAAm: a multi-responsive hydrogel 4 Design, production and characterization methods of hydrogel-based microfluidic systems 4.1 The semi-automated computer aided design approach for microfluidic systems 4.2 The applied design process 4.3 Fabrication of microfluidic chips 4.3.1 Photoresist master fabrication 4.3.2 Soft lithography for PDMS chip production 4.3.3 Assembling PDMS chips by plasma bonding 4.4 Integration of functional hydrogels in microfluidic chips 4.4.1 Preparation of a monomer solution for hydrogel synthesis 4.4.2 Integration methods 4.5 Effects on hydrogel photopolymerization and the role of integration method 4.5.1 Photopolymerization from monomer solutions: managing the diffusion of free radicals 4.5.2 Hydrogel adhesion and UV light intensity distribution in the polymerization chamber 4.5.3 Hydrogel shrinkage behavior of different adhesion types 4.6 Comparison of the integration methods 4.7 Characterization setups for hydrogel actuators and microfluidic measurements . 71 4.7.1 Optical characterization method to describe swelling behavior 4.7.2 Setup of a microfluidic test stand 4.8 Conclusion: design, production and characterization methods 5 VLSI technology for hydrogel-based microfluidics 5.1 Overview of photolithography methods 5.2 Standard UV photolithography system for microfluidic structures 5.3 Self-made UV lithography system suitable for the mVLSI 5.3.1 Lithography setup for the DFR and SU-8 master exposure 5.3.2 Comparison of mask-based UV induced crosslinking for DFR and SU-8 5.4 Mask-based UV photopolymerization for mVLSI hydrogel patterning 5.4.1 Lithography setup for the photopolymerization of hydrogels 5.4.2 Hydrogel photopolymerization: experiments and results 5.4.3 Troubleshooting: photopolymerization of hydrogels 5.5 Conclusion: mVLSI technologies for hydrogel-based LoCs 6 Components for chemofluidic circuit design 6.1 Passive components in microfluidics 6.1.1 Microfluidic resistor 6.1.2 Planar-passive microfluidic signal mixer 6.1.3 Phase separation: laminar flow signal splitter 6.1.4 Hydrogel-based microfluidic one-directional valves 6.2 Hydrogel-based active components 6.2.1 Reversible hydrogel-based valves 6.2.2 Hydrogel-based variable resistors 6.2.3 CVPT: the microfluidic transistor 6.3 Conclusion: components for chemofluidic circuits 7 Hydrogel-based logic circuits in planar microfluidics 7.1 Development of a planar CVPT logic concept 7.1.1 Challenges of planar microfluidics 7.1.2 Preparatory work and conceptional basis 7.2 The microfluidic CVPT-RTL concept 7.3 The CVPT-RTL NAND gate 7.3.1 Circuit optimization stabilizing the NAND operating mode 7.3.2 Role of laminar flow for the CVPT-RTL concept 7.3.3 Hydrogel-based components for improved switching reliability 7.4 One design fits all: the NOR, AND and OR gate 7.5 Control measures for cascaded systems 7.6 Application scenarios for the CVPT-RTL concept 7.6.1 Use case: automated cell growth system 7.6.2 Use case: chemofluidic converter 7.7 Conclusion: Hydrogel-based logic circuits 8 Summary and outlook 8.1 Scientific achievements 8.2 Summarized recommendations from this work Supplementary information SI.1 Swelling degree of BIS-pNIPAAm gels SI.2 Simulated ray tracing of UV lithography setup by WinLens® SI.3 Determination of the resolution using the intercept theorem SI.4 Microfluidic master mold test structures SI.4.1 Polymer and glass mask comparison SI.4.2 Resolution Siemens star in DFR SI.4.3 Resolution Siemens star in SU-8 SI.4.4 Integration test array 300 μm for DFR and SU-8 SI.4.5 Integration test array 100 μm for SU-8 SI.4.6 Microfluidic structure for different technology parameters SI.5 Microfluidic test setups SI.6 Supplementary information: microfluidic components SI.6.1 Compensation methods for flow stabilization in microfluidic chips SI.6.2 Planar-passive microfluidic signal mixer SI.6.3 Laminar flow signal splitter SI.6.4 Variable fluidic resistors: flow rate characteristics SI.6.5 CVPT flow rate characteristics for high Rout Standard operation proceduresDer Transport von lebenswichtigen Nährstoffen in Flüssigkeiten sowie der Austausch spezifischer chemischer Signale von Zelle zu Zelle wurde in Milliarden Jahren natürlicher Evolution optimiert. Dieses Vorbild aus der Natur ist ein treibender Faktor im Fachgebiet der Mikrofluidik, welches die Manipulation kleinster Flüssigkeitsmengen erforscht um diese Effekte in fluidischen Mikrosystemen für technische Lösungen zu nutzen. Derzeit finden mikrofluidische Systeme vor allem in der Diagnostik, z.B. wie SARS-CoV-2-Antigentests, oder im Bereich der Hochdurchsatzanalyse, z.B. in der Krebsforschung, besondere Beachtung. Entweder einfach zu bedienende oder hochintegrierte mikrofluidische Systeme, die biologische und chemische Laboruntersuchungen auf einem sogenannten Lab-on-a-Chip (LoC) durchführen, bieten schnelle Analysen, hohe Funktionalität, hervorragende Reproduzierbarkeit bei niedrigen Kosten pro Probe und einen geringen Bedarf an Reagenzien durch die Miniaturisierung des Systems. Trotz des großen Fortschritts verschiedener LoC-Technologieplattformen in den letzten 30 Jahren mangelt es noch an standardisierten mikrofluidischen Komponenten sowie an einer leistungsstarken, vollintegrierten On-Chip-Automatisierung. Vielversprechend für das Design mikrofluidischer Systeme ist die Ähnlichkeit der Kirchhoff'schen Gesetze aus der Elektronik zur Vorhersage von Druck und Flussrate in Mikrokanalstrukturen. Ein spezifischer Ansatz der LoC-Plattformtechnologie steuert Flüssigkeiten durch aktive Polymere, die auf spezifische physikalische und chemische Signale in der Flüssigkeit reagieren. Analog zur (Mikro-)Elektronik können diese aktiven Polymermaterialien durch verschiedene fotolithografische und mikrostrukturelle Methoden realisiert werden, um funktionelle Elemente mit hoher Skalierbarkeit zu erzeugen.\\ Die sogenannten chemofluidischen Schaltungen haben ein hohes funktionales Potenzial und ermöglichen eine 'wirkliche' on-chip Automatisierung, sind jedoch komplex im Systemdesign. In dieser Arbeit wird ein fortgeschrittenes Schaltungskonzept für eine planare mikrofluidische Chiparchitektur vorgestellt, das aus der frühen Ära der halbleiterbasierten Resistor-Transistor-Logik (RTL) hervorgeht. Beginnend mit dem Stand der Technik der mikrofluidischen Technologien, werden Materialien und Methoden dieser Arbeit näher beschrieben. Daraufhin wird die bevorzugte Herstellungstechnologie bewertet und verschiedene mikrofluidische Komponenten werden in Funktion und Design diskutiert. Die wichtigste Komponente, die es zu charakterisieren gilt, ist der auf Hydrogel basierende chemische Volumen-Phasenübergangstransistor (CVPT), der den Schlüssel zur Realisierung mikrofluidische Logikgatteroperationen darstellt. Dieses Schaltungskonzept (CVPT-RTL) ist robust und einfach im Design und kann mit gängigen Materialien und Fertigungstechniken realisiert werden. Zuletzt werden Anwendungsszenarien für das CVPT-RTL-Konzept vorgestellt und Empfehlungen für die fortlaufende Entwicklung angestellt.:1 The transistor: invention of the 20th century 2 Introduction to fluidic microsystems and the theoretical basics 2.1 Fluidic systems at the microscale 2.2 Overview of microfluidic chip fabrication 2.2.1 Common substrate materials for fluidic microsystems 2.2.2 Structuring polymer substrates for microfluidics 2.2.3 Polymer chip bonding technologies 2.3 Fundamentals and microfluidic transport processes 2.3.1 Fluid dynamics in miniaturized systems 2.3.2 Hagen-Poiseuille law: the fluidic resistance 2.3.3 Electronic and microfluidic circuit model analogy 2.3.4 Limits of the electro-fluidic analogy 2.4 Active components for microfluidic control 2.4.1 Fluid transport by integrated micropumps 2.4.2 Controlling fluids by on-chip microvalves 2.4.3 Hydrogel-based microvalve archetypes 2.5 LoC technologies: lost in translation? 2.6 Microfluidic platforms providing logic operations 2.6.1 Hybrids: MEMS-based logic concepts 2.6.2 Intrinsic logic operators for microfluidic circuits 2.7 Research objective: microfluidic hydrogel-based logic circuits 3 Stimuli-responsive polymers for microfluidics 3.1 Introduction to hydrogels 3.1.1 Application variety of hydrogels 3.1.2 Hydrogel microstructuring methods 3.2 Theory: stimuli-responsive hydrogels 3.3 PNIPAAm: a multi-responsive hydrogel 4 Design, production and characterization methods of hydrogel-based microfluidic systems 4.1 The semi-automated computer aided design approach for microfluidic systems 4.2 The applied design process 4.3 Fabrication of microfluidic chips 4.3.1 Photoresist master fabrication 4.3.2 Soft lithography for PDMS chip production 4.3.3 Assembling PDMS chips by plasma bonding 4.4 Integration of functional hydrogels in microfluidic chips 4.4.1 Preparation of a monomer solution for hydrogel synthesis 4.4.2 Integration methods 4.5 Effects on hydrogel photopolymerization and the role of integration method 4.5.1 Photopolymerization from monomer solutions: managing the diffusion of free radicals 4.5.2 Hydrogel adhesion and UV light intensity distribution in the polymerization chamber 4.5.3 Hydrogel shrinkage behavior of different adhesion types 4.6 Comparison of the integration methods 4.7 Characterization setups for hydrogel actuators and microfluidic measurements . 71 4.7.1 Optical characterization method to describe swelling behavior 4.7.2 Setup of a microfluidic test stand 4.8 Conclusion: design, production and characterization methods 5 VLSI technology for hydrogel-based microfluidics 5.1 Overview of photolithography methods 5.2 Standard UV photolithography system for microfluidic structures 5.3 Self-made UV lithography system suitable for the mVLSI 5.3.1 Lithography setup for the DFR and SU-8 master exposure 5.3.2 Comparison of mask-based UV induced crosslinking for DFR and SU-8 5.4 Mask-based UV photopolymerization for mVLSI hydrogel patterning 5.4.1 Lithography setup for the photopolymerization of hydrogels 5.4.2 Hydrogel photopolymerization: experiments and results 5.4.3 Troubleshooting: photopolymerization of hydrogels 5.5 Conclusion: mVLSI technologies for hydrogel-based LoCs 6 Components for chemofluidic circuit design 6.1 Passive components in microfluidics 6.1.1 Microfluidic resistor 6.1.2 Planar-passive microfluidic signal mixer 6.1.3 Phase separation: laminar flow signal splitter 6.1.4 Hydrogel-based microfluidic one-directional valves 6.2 Hydrogel-based active components 6.2.1 Reversible hydrogel-based valves 6.2.2 Hydrogel-based variable resistors 6.2.3 CVPT: the microfluidic transistor 6.3 Conclusion: components for chemofluidic circuits 7 Hydrogel-based logic circuits in planar microfluidics 7.1 Development of a planar CVPT logic concept 7.1.1 Challenges of planar microfluidics 7.1.2 Preparatory work and conceptional basis 7.2 The microfluidic CVPT-RTL concept 7.3 The CVPT-RTL NAND gate 7.3.1 Circuit optimization stabilizing the NAND operating mode 7.3.2 Role of laminar flow for the CVPT-RTL concept 7.3.3 Hydrogel-based components for improved switching reliability 7.4 One design fits all: the NOR, AND and OR gate 7.5 Control measures for cascaded systems 7.6 Application scenarios for the CVPT-RTL concept 7.6.1 Use case: automated cell growth system 7.6.2 Use case: chemofluidic converter 7.7 Conclusion: Hydrogel-based logic circuits 8 Summary and outlook 8.1 Scientific achievements 8.2 Summarized recommendations from this work Supplementary information SI.1 Swelling degree of BIS-pNIPAAm gels SI.2 Simulated ray tracing of UV lithography setup by WinLens® SI.3 Determination of the resolution using the intercept theorem SI.4 Microfluidic master mold test structures SI.4.1 Polymer and glass mask comparison SI.4.2 Resolution Siemens star in DFR SI.4.3 Resolution Siemens star in SU-8 SI.4.4 Integration test array 300 μm for DFR and SU-8 SI.4.5 Integration test array 100 μm for SU-8 SI.4.6 Microfluidic structure for different technology parameters SI.5 Microfluidic test setups SI.6 Supplementary information: microfluidic components SI.6.1 Compensation methods for flow stabilization in microfluidic chips SI.6.2 Planar-passive microfluidic signal mixer SI.6.3 Laminar flow signal splitter SI.6.4 Variable fluidic resistors: flow rate characteristics SI.6.5 CVPT flow rate characteristics for high Rout Standard operation procedure

    Algorithmic techniques for physical design : macro placement and under-the-cell routing

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    With the increase of chip component density and new manufacturability constraints imposed by modern technology nodes, the role of algorithms for electronic design automation is key to the successful implementation of integrated circuits. Two of the critical steps in the physical design flows are macro placement and ensuring all design rules are honored after timing closure. This thesis proposes contributions to help in these stages, easing time-consuming manual steps and helping physical design engineers to obtain better layouts in reduced turnaround time. The first contribution is under-the-cell routing, a proposal to systematically connect standard cell components via lateral pins in the lower metal layers. The aim is to reduce congestion in the upper metal layers caused by extra metal and vias, decreasing the number of design rule violations. To allow cells to connect by abutment, a standard cell library is enriched with instances containing lateral pins in a pre-selected sharing track. Algorithms are proposed to maximize the numbers of connections via lateral connection by mapping placed cell instances to layouts with lateral pins, and proposing local placement modifications to increase the opportunities for such connections. Experimental results show a significant decrease in the number of pins, vias, and in number of design rule violations, with negligible impact on wirelength and timing. The second contribution, done in collaboration with eSilicon (a leading ASIC design company), is the creation of HiDaP, a macro placement tool for modern industrial designs. The proposed approach follows a multilevel scheme to floorplan hierarchical blocks, composed of macros and standard cells. By exploiting RTL information available in the netlist, the dataflow affinity between these blocks is modeled and minimized to find a macro placement with good wirelength and timing properties. The approach is further extended to allow additional engineer input, such as preferred macro locations, and also spectral and force methods to guide the floorplanning search. Experimental results show that the layouts generated by HiDaP outperforms those obtained by a state-of-the-art EDA physical design software, with similar wirelength and better timing when compared to manually designed tape-out ready macro placements. Layouts obtained by HiDaP have successfully been brought to near timing closure with one to two rounds of small modifications by physical design engineers. HiDaP has been fully integrated in the design flows of the company and its development remains an ongoing effort.A causa de l'increment de la densitat de components en els xip i les noves restriccions de disseny imposades pels últims nodes de fabricació, el rol de l'algorísmia en l'automatització del disseny electrònic ha esdevingut clau per poder implementar circuits integrats. Dos dels passos crucials en el procés de disseny físic és el placement de macros i assegurar la correcció de les regles de disseny un cop les restriccions de timing del circuit són satisfetes. Aquesta tesi proposa contribucions per ajudar en aquests dos reptes, facilitant laboriosos passos manuals en el procés i ajudant als enginyers de disseny físic a obtenir millors resultats en menys temps. La primera contribució és el routing "under-the-cell", una proposta per connectar cel·les estàndard usant pins laterals en les capes de metall inferior de manera sistemàtica. L'objectiu és reduir la congestió en les capes de metall superior causades per l'ús de metall i vies, i així disminuir el nombre de violacions de regles de disseny. Per permetre la connexió lateral de cel·les, estenem una llibreria de cel·les estàndard amb dissenys que incorporen connexions laterals. També proposem modificacions locals al placement per permetre explotar aquest tipus de connexions més sovint. Els resultats experimentals mostren una reducció significativa en el nombre de pins, vies i nombre de violacions de regles de disseny, amb un impacte negligible en wirelength i timing. La segona contribució, desenvolupada en col·laboració amb eSilicon (una empresa capdavantera en disseny ASIC), és el desenvolupament de HiDaP, una eina de macro placement per a dissenys industrials actuals. La proposta segueix un procés multinivell per fer el floorplan de blocks jeràrquics, formats per macros i cel·les estàndard. Mitjançant la informació RTL disponible en la netlist, l'afinitat de dataflow entre els mòduls es modela i minimitza per trobar macro placements amb bones propietats de wirelength i timing. La proposta també incorpora la possibilitat de rebre input addicional de l'enginyer, com ara suggeriments de les posicions de les macros. Finalment, també usa mètodes espectrals i de forçes per guiar la cerca de floorplans. Els resultats experimentals mostren que els dissenys generats amb HiDaP són millors que els obtinguts per eines comercials capdavanteres de EDA. Els resultats també mostren que els dissenys presentats poden obtenir un wirelength similar i millor timing que macro placements obtinguts manualment, usats per fabricació. Alguns dissenys obtinguts per HiDaP s'han dut fins a timing-closure en una o dues rondes de modificacions incrementals per part d'enginyers de disseny físic. L'eina s'ha integrat en el procés de disseny de eSilicon i el seu desenvolupament continua més enllà de les aportacions a aquesta tesi.Postprint (published version

    Algorithmic techniques for physical design : macro placement and under-the-cell routing

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    With the increase of chip component density and new manufacturability constraints imposed by modern technology nodes, the role of algorithms for electronic design automation is key to the successful implementation of integrated circuits. Two of the critical steps in the physical design flows are macro placement and ensuring all design rules are honored after timing closure. This thesis proposes contributions to help in these stages, easing time-consuming manual steps and helping physical design engineers to obtain better layouts in reduced turnaround time. The first contribution is under-the-cell routing, a proposal to systematically connect standard cell components via lateral pins in the lower metal layers. The aim is to reduce congestion in the upper metal layers caused by extra metal and vias, decreasing the number of design rule violations. To allow cells to connect by abutment, a standard cell library is enriched with instances containing lateral pins in a pre-selected sharing track. Algorithms are proposed to maximize the numbers of connections via lateral connection by mapping placed cell instances to layouts with lateral pins, and proposing local placement modifications to increase the opportunities for such connections. Experimental results show a significant decrease in the number of pins, vias, and in number of design rule violations, with negligible impact on wirelength and timing. The second contribution, done in collaboration with eSilicon (a leading ASIC design company), is the creation of HiDaP, a macro placement tool for modern industrial designs. The proposed approach follows a multilevel scheme to floorplan hierarchical blocks, composed of macros and standard cells. By exploiting RTL information available in the netlist, the dataflow affinity between these blocks is modeled and minimized to find a macro placement with good wirelength and timing properties. The approach is further extended to allow additional engineer input, such as preferred macro locations, and also spectral and force methods to guide the floorplanning search. Experimental results show that the layouts generated by HiDaP outperforms those obtained by a state-of-the-art EDA physical design software, with similar wirelength and better timing when compared to manually designed tape-out ready macro placements. Layouts obtained by HiDaP have successfully been brought to near timing closure with one to two rounds of small modifications by physical design engineers. HiDaP has been fully integrated in the design flows of the company and its development remains an ongoing effort.A causa de l'increment de la densitat de components en els xip i les noves restriccions de disseny imposades pels últims nodes de fabricació, el rol de l'algorísmia en l'automatització del disseny electrònic ha esdevingut clau per poder implementar circuits integrats. Dos dels passos crucials en el procés de disseny físic és el placement de macros i assegurar la correcció de les regles de disseny un cop les restriccions de timing del circuit són satisfetes. Aquesta tesi proposa contribucions per ajudar en aquests dos reptes, facilitant laboriosos passos manuals en el procés i ajudant als enginyers de disseny físic a obtenir millors resultats en menys temps. La primera contribució és el routing "under-the-cell", una proposta per connectar cel·les estàndard usant pins laterals en les capes de metall inferior de manera sistemàtica. L'objectiu és reduir la congestió en les capes de metall superior causades per l'ús de metall i vies, i així disminuir el nombre de violacions de regles de disseny. Per permetre la connexió lateral de cel·les, estenem una llibreria de cel·les estàndard amb dissenys que incorporen connexions laterals. També proposem modificacions locals al placement per permetre explotar aquest tipus de connexions més sovint. Els resultats experimentals mostren una reducció significativa en el nombre de pins, vies i nombre de violacions de regles de disseny, amb un impacte negligible en wirelength i timing. La segona contribució, desenvolupada en col·laboració amb eSilicon (una empresa capdavantera en disseny ASIC), és el desenvolupament de HiDaP, una eina de macro placement per a dissenys industrials actuals. La proposta segueix un procés multinivell per fer el floorplan de blocks jeràrquics, formats per macros i cel·les estàndard. Mitjançant la informació RTL disponible en la netlist, l'afinitat de dataflow entre els mòduls es modela i minimitza per trobar macro placements amb bones propietats de wirelength i timing. La proposta també incorpora la possibilitat de rebre input addicional de l'enginyer, com ara suggeriments de les posicions de les macros. Finalment, també usa mètodes espectrals i de forçes per guiar la cerca de floorplans. Els resultats experimentals mostren que els dissenys generats amb HiDaP són millors que els obtinguts per eines comercials capdavanteres de EDA. Els resultats també mostren que els dissenys presentats poden obtenir un wirelength similar i millor timing que macro placements obtinguts manualment, usats per fabricació. Alguns dissenys obtinguts per HiDaP s'han dut fins a timing-closure en una o dues rondes de modificacions incrementals per part d'enginyers de disseny físic. L'eina s'ha integrat en el procés de disseny de eSilicon i el seu desenvolupament continua més enllà de les aportacions a aquesta tesi

    Annual Report 2015 - Institute of Ion Beam Physics and Materials Research

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    After the successful evaluation in 2015 we started research and further development of our largescale facilities, in particular the Ion Beam Center (IBC), in the framework of Helmholtz’s Programmeoriented Funding scheme (POF) which coordinates scientific cooperation on a national and international scale. Most of our activities are assigned to the Helmholtz program “From Matter to Materials and Life” within the research area “Matter”, in cooperation with several other German Helmholtz Centers. Our in-house research is performed in three so-called research themes, as depicted in the schematic below. What is missing there for simplicity is a minor part of our activities in the program “Nuclear Waste Management and Safety” within the research area “Energy”. A few highlights which have been published in 2015 are reprinted in this annual report in order to show the variety of the research being performed at the Institute, ranging from self-organized pattern formation during ion erosion or DNA origami patterning, over ferromagnetism in SiC and TiO2 to plasmonics and THz-spectroscopy of III-V semiconductors. A technological highlight published recently is the demonstration of nanometer scale elemental analysis in a Helium ion microscope, making use of a time-of-flight detector that has been developed at the IBC. In addition to these inhouse research highlights, also users of the IBC, in particular of the accelerator mass spectrometry (AMS), succeeded in publishing their research on geomorphology in Nepal in the high-impact journal Science (W. Schwanghart et al., Science 351, 147 (2015)), which demonstrates impressively the added value of transdisciplinary research at the IBC. In order to further develop the IBC, we have started in 2015 the design and construction of our new low energy ion nanoengineering platform which was highly recommended by the POF evaluators. It will consist of two-dimensional materials synthesis and modification, high-resolution ion beam analysis and high-resolution electron beam analysis and will come into full operation in 2019

    Nanoimprint Lithography Technology and Applications

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    Nanoimprint Lithography (NIL) has been an interesting and growing field in recent years since its beginnings in the mid-1990s. During that time, nanoimprinting has undergone significant changes and developments and nowadays is a technology used in R&D labs and industrial production processes around the world. One of the exciting things about nanoimprinting process is its remarkable versatility and the broad range of applications. This reprint includes ten articles, which represent a small glimpse of the challenges and possibilities of this technology. Six contributions deal with nanoimprint processes aiming at specific applications, while the other four papers focus on more general aspects of nanoimprint processes or present novel materials. Several different types of nanoimprint processes are used: plate-to-plate, roll-to-plate, and roll-to-roll. Plate-to-plate NIL here also includes the use of soft and flexible stamps. The application fields in this reprint are broad and can be identified as plasmonics, superhydrophibicity, biomimetics, optics/datacom, and life sciences, showing the broad applicability of nanoimprinting. The sections on the nanoimprint process discuss filling and wetting aspects during nanoimprinting as well as materials for stamps and imprinting

    Cutting Edge Nanotechnology

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    The main purpose of this book is to describe important issues in various types of devices ranging from conventional transistors (opening chapters of the book) to molecular electronic devices whose fabrication and operation is discussed in the last few chapters of the book. As such, this book can serve as a guide for identifications of important areas of research in micro, nano and molecular electronics. We deeply acknowledge valuable contributions that each of the authors made in writing these excellent chapters
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