ILSA 2017 in Tromsø : proceedings from the 42nd annual conference of the International Lung Sound Association

Edited by Hasse Medbye, med bidrag fra flere.<brThe usefulness of lung auscultation is changing. It depends on how well practitioners understand the generation of sounds. It also depends on their knowledge on how lung sounds are associated with lung and heart diseases, as well as with other factors such as ageing and smoking habits. In clinical practice, practitioners need to give sufficient attention to lung auscultation, and they should use the same terminology, or at least understand each other’s use of terms. Technological innovations lead to an extended use of lung auscultation. Continuous monitoring of lung sounds is now possible, and computers can extract more information from the complex lung sounds than human hearing is capable of. Learning how to carry out lung auscultation and to interpret the sounds are essential skills in the education of doctors and other health professionals. Thus, new computer based learning tools for the study of recorded sounds will be helpful. In this conference there will be focus on all these determinants for efficient lung auscultation. In addition to free oral presentations, we have three symposia: on computerized analysis based on machine learning, on diagnostics, and on learning lung sounds, including the psychology of hearing. The symposia include extended presentations from invited speakers. The 42nd conference is the first in history arranged by a research unit for general practice. Primary care doctors are probably the group of health professionals that put the greatest emphasis on lung auscultation in their clinical work. Many patients with chest symptoms consult without a known diagnosis, and several studies have shown that general practitioners pay attention to crackles and wheezes when making decisions, for instance when antibiotics are prescribed to coughing patients. In hospital, the diagnosis of lung diseases is more strongly influenced by technologies such as radiography and blood gas analysis. Since lung auscultation holds a strong position in the work of primary care doctors, I think it is just timely, that the 42nd ILSA conference is hosted by General Practice Research Unit in Tromsø. I hope all participants will find presentations of importance, and that the stay in Tromsø will be enjoyable

Portable UWB RADAR Sensing System for Transforming Subtle Chest Movement into Actionable Micro-Doppler Signatures to Extract Respiratory Rate Exploiting ResNet Algorithm

Contactless or non-invasive technology for the monitoring of anomalies in an inconspicuous and distant environment has immense significance in health-related applications, in particular COVID-19 symptoms detection, diagnosis, and monitoring. Contactless methods are crucial specifically during the COVID-19 epidemic as they require the least amount of involvement from infected individuals as well as healthcare personnel. According to recent medical research studies regarding coronavirus, individuals infected with novel COVID-19-Delta variant undergo elevated respiratory rates due to extensive infection in the lungs. This appalling situation demands constant real-time monitoring of respiratory patterns, which can help in avoiding any pernicious circumstances. In this paper, an Ultra-Wideband RADAR sensor “XeThru X4M200” is exploited to capture vital respiratory patterns. In the low and high frequency band, X4M200 operates within the 6.0-8.5 GHz and 7.25-10.20 GHz band, respectively. The experimentation is conducted on six distinct individuals to replicate a realistic scenario of irregular respiratory rates. The data is obtained in the form of spectrograms by carrying out normal (eupnea) and abnormal (tachypnea) respiratory. The collected spectrogram data is trained, validated, and tested using a cutting-edge deep learning technique called Residual Neural Network or ResNet. The trained ResNet model’s performance is assessed using the confusion matrix, precision, recall, F1-score, and classification accuracy. The unordinary skip connection process of the deep ResNet algorithm significantly reduces the underfitting and overfitting problem, resulting in a classification accuracy rate of up to 90%

Characterization and processing of novel neck photoplethysmography signals for cardiorespiratory monitoring

Epilepsy is a neurological disorder causing serious brain seizures that severely affect the patients' quality of life. Sudden unexpected death in epilepsy (SUDEP), for which no evident decease reason is found after post-mortem examination, is a common cause of mortality. The mechanisms leading to SUDEP are uncertain, but, centrally mediated apneic respiratory dysfunction, inducing dangerous hypoxemia, plays a key role. Continuous physiological monitoring appears as the only reliable solution for SUDEP prevention. However, current seizure-detection systems do not show enough sensitivity and present a high number of intolerable false alarms. A wearable system capable of measuring several physiological signals from the same body location, could efficiently overcome these limitations. In this framework, a neck wearable apnea detection device (WADD), sensing airflow through tracheal sounds, was designed. Despite the promising performance, it is still necessary to integrate an oximeter sensor into the system, to measure oxygen saturation in blood (SpO2) from neck photoplethysmography (PPG) signals, and hence, support the apnea detection decision. The neck is a novel PPG measurement site that has not yet been thoroughly explored, due to numerous challenges. This research work aims to characterize neck PPG signals, in order to fully exploit this alternative pulse oximetry location, for precise cardiorespiratory biomarkers monitoring. In this thesis, neck PPG signals were recorded, for the first time in literature, in a series of experiments under different artifacts and respiratory conditions. Morphological and spectral characteristics were analyzed in order to identify potential singularities of the signals. The most common neck PPG artifacts critically corrupting the signal quality, and other breathing states of interest, were thoroughly characterized in terms of the most discriminative features. An algorithm was further developed to differentiate artifacts from clean PPG signals. Both, the proposed characterization and classification model can be useful tools for researchers to denoise neck PPG signals and exploit them in a variety of clinical contexts. In addition to that, it was demonstrated that the neck also offered the possibility, unlike other body parts, to extract the Jugular Venous Pulse (JVP) non-invasively. Overall, the thesis showed how the neck could be an optimum location for multi-modal monitoring in the context of diseases affecting respiration, since it not only allows the sensing of airflow related signals, but also, the breathing frequency component of the PPG appeared more prominent than in the standard finger location. In this context, this property enabled the extraction of relevant features to develop a promising algorithm for apnea detection in near-real time. These findings could be of great importance for SUDEP prevention, facilitating the investigation of the mechanisms and risk factors associated to it, and ultimately reduce epilepsy mortality.Open Acces

Learning Biosignals with Deep Learning

The healthcare system, which is ubiquitously recognized as one of the most influential system in society, is facing new challenges since the start of the decade.The myriad of physiological data generated by individuals, namely in the healthcare system, is generating a burden on physicians, losing effectiveness on the collection of patient data. Information systems and, in particular, novel deep learning (DL) algorithms have been prompting a way to take this problem. This thesis has the aim to have an impact in biosignal research and industry by presenting DL solutions that could empower this field. For this purpose an extensive study of how to incorporate and implement Convolutional Neural Networks (CNN), Recursive Neural Networks (RNN) and Fully Connected Networks in biosignal studies is discussed. Different architecture configurations were explored for signal processing and decision making and were implemented in three different scenarios: (1) Biosignal learning and synthesis; (2) Electrocardiogram (ECG) biometric systems, and; (3) Electrocardiogram (ECG) anomaly detection systems. In (1) a RNN-based architecture was able to replicate autonomously three types of biosignals with a high degree of confidence. As for (2) three CNN-based architectures, and a RNN-based architecture (same used in (1)) were used for both biometric identification, reaching values above 90% for electrode-base datasets (Fantasia, ECG-ID and MIT-BIH) and 75% for off-person dataset (CYBHi), and biometric authentication, achieving Equal Error Rates (EER) of near 0% for Fantasia and MIT-BIH and bellow 4% for CYBHi. As for (3) the abstraction of healthy clean the ECG signal and detection of its deviation was made and tested in two different scenarios: presence of noise using autoencoder and fully-connected network (reaching 99% accuracy for binary classification and 71% for multi-class), and; arrhythmia events by including a RNN to the previous architecture (57% accuracy and 61% sensitivity). In sum, these systems are shown to be capable of producing novel results. The incorporation of several AI systems into one could provide to be the next generation of preventive medicine, as the machines have access to different physiological and anatomical states, it could produce more informed solutions for the issues that one may face in the future increasing the performance of autonomous preventing systems that could be used in every-day life in remote places where the access to medicine is limited. These systems will also help the study of the signal behaviour and how they are made in real life context as explainable AI could trigger this perception and link the inner states of a network with the biological traits.O sistema de saúde, que é ubiquamente reconhecido como um dos sistemas mais influentes da sociedade, enfrenta novos desafios desde o ínicio da década. A miríade de dados fisiológicos gerados por indíviduos, nomeadamente no sistema de saúde, está a gerar um fardo para os médicos, perdendo a eficiência no conjunto dos dados do paciente. Os sistemas de informação e, mais espcificamente, da inovação de algoritmos de aprendizagem profunda (DL) têm sido usados na procura de uma solução para este problema. Esta tese tem o objetivo de ter um impacto na pesquisa e na indústria de biosinais, apresentando soluções de DL que poderiam melhorar esta área de investigação. Para esse fim, é discutido um extenso estudo de como incorporar e implementar redes neurais convolucionais (CNN), redes neurais recursivas (RNN) e redes totalmente conectadas para o estudo de biosinais. Diferentes arquiteturas foram exploradas para processamento e tomada de decisão de sinais e foram implementadas em três cenários diferentes: (1) Aprendizagem e síntese de biosinais; (2) sistemas biométricos com o uso de eletrocardiograma (ECG), e; (3) Sistema de detecção de anomalias no ECG. Em (1) uma arquitetura baseada na RNN foi capaz de replicar autonomamente três tipos de sinais biológicos com um alto grau de confiança. Quanto a (2) três arquiteturas baseadas em CNN e uma arquitetura baseada em RNN (a mesma usada em (1)) foram usadas para ambas as identificações, atingindo valores acima de 90 % para conjuntos de dados à base de eletrodos (Fantasia, ECG-ID e MIT -BIH) e 75 % para o conjunto de dados fora da pessoa (CYBHi) e autenticação, atingindo taxas de erro iguais (EER) de quase 0 % para Fantasia e MIT-BIH e abaixo de 4 % para CYBHi. Quanto a (3) a abstração de sinais limpos e assimptomáticos de ECG e a detecção do seu desvio foram feitas e testadas em dois cenários diferentes: na presença de ruído usando um autocodificador e uma rede totalmente conectada (atingindo 99 % de precisão na classificação binária e 71 % na multi-classe), e; eventos de arritmia incluindo um RNN na arquitetura anterior (57 % de precisão e 61 % de sensibilidade). Em suma, esses sistemas são mais uma vez demonstrados como capazes de produzir resultados inovadores. A incorporação de vários sistemas de inteligência artificial em um unico sistema pederá desencadear a próxima geração de medicina preventiva. Os algoritmos ao terem acesso a diferentes estados fisiológicos e anatómicos, podem produzir soluções mais informadas para os problemas que se possam enfrentar no futuro, aumentando o desempenho de sistemas autónomos de prevenção que poderiam ser usados na vida quotidiana, nomeadamente em locais remotos onde o acesso à medicinas é limitado. Estes sistemas também ajudarão o estudo do comportamento do sinal e como eles são feitos no contexto da vida real, pois a IA explicável pode desencadear essa percepção e vincular os estados internos de uma rede às características biológicas

Modulations of Heart Rate, ECG, and Cardio-Respiratory Coupling Observed in Polysomnography

The cardiac component of cardio-respiratory polysomnography is covered by ECG and heart rate recordings. However their evaluation is often underrepresented in summarizing reports. As complements to EEG, EOG, and EMG, these signals provide diagnostic information for autonomic nervous activity during sleep. This review presents major methodological developments in sleep research regarding heart rate, ECG and cardio-respiratory couplings in a chronological (historical) sequence. It presents physiological and pathophysiological insights related to sleep medicine obtained by new technical developments. Recorded nocturnal ECG facilitates conventional heart rate variability analysis, studies of cyclical variations of heart rate, and analysis of ECG waveform. In healthy adults, the autonomous nervous system is regulated in totally different ways during wakefulness, slow-wave sleep, and REM sleep. Analysis of beat-to-beat heart-rate variations with statistical methods enables us to estimate sleep stages based on the differences in autonomic nervous system regulation. Furthermore, up to some degree, it is possible to track transitions from wakefulness to sleep by analysis of heart-rate variations. ECG and heart rate analysis allow assessment of selected sleep disorders as well. Sleep disordered breathing can be detected reliably by studying cyclical variation of heart rate combined with respiration-modulated changes in ECG morphology (amplitude of R wave and T wave)

Noncontact Vital Signs Detection

Human health condition can be accessed by measurement of vital signs, i.e., respiratory rate (RR), heart rate (HR), blood oxygen level, temperature and blood pressure. Due to drawbacks of contact sensors in measurement, non-contact sensors such as imaging photoplethysmogram (IPPG) and Doppler radar system have been proposed for cardiorespiratory rates detection by researchers.The UWB pulse Doppler radars provide high resolution range-time-frequency information. It is bestowed with advantages of low transmitted power, through-wall capabilities, and high resolution in localization. However, the poor signal to noise ratio (SNR) makes it challenging for UWB radar systems to accurately detect the heartbeat of a subject. To solve the problem, phased-methods have been proposed to extract the phase variations in the reflected pulses modulated by human tiny thorax motions. Advance signal processing method, i.e., state space method, can not only be used to enhance SNR of human vital signs detection, but also enable the micro-Doppler trajectories extraction of walking subject from UWB radar data.Stepped Frequency Continuous Wave (SFCW) radar is an alternative technique useful to remotely monitor human subject activities. Compared with UWB pulse radar, it relieves the stress on requirement of high sampling rate analog-to-digital converter (ADC) and possesses higher signal-to-noise-ratio (SNR) in vital signs detection. However, conventional SFCW radar suffers from long data acquisition time to step over many frequencies. To solve this problem, multi-channel SFCW radar has been proposed to step through different frequency bandwidths simultaneously. Compressed sensing (CS) can further reduce the data acquisition time by randomly stepping through 20% of the original frequency steps.In this work, SFCW system is implemented with low cost, off-the-shelf surface mount components to make the radar sensors portable. Experimental results collected from both pulse and SFCW radar systems have been validated with commercial contact sensors and satisfactory results are shown

Multimodal Signal Processing for Diagnosis of Cardiorespiratory Disorders

This thesis addresses the use of multimodal signal processing to develop algorithms for the automated processing of two cardiorespiratory disorders. The aim of the first application of this thesis was to reduce false alarm rate in an intensive care unit. The goal was to detect five critical arrhythmias using processing of multimodal signals including photoplethysmography, arterial blood pressure, Lead II and augmented right arm electrocardiogram (ECG). A hierarchical approach was used to process the signals as well as a custom signal processing technique for each arrhythmia type. Sleep disorders are a prevalent health issue, currently costly and inconvenient to diagnose, as they normally require an overnight hospital stay by the patient. In the second application of this project, we designed automated signal processing algorithms for the diagnosis of sleep apnoea with a main focus on the ECG signal processing. We estimated the ECG-derived respiratory (EDR) signal using different methods: QRS-complex area, principal component analysis (PCA) and kernel PCA. We proposed two algorithms (segmented PCA and approximated PCA) for EDR estimation to enable applying the PCA method to overnight recordings and rectify the computational issues and memory requirement. We compared the EDR information against the chest respiratory effort signals. The performance was evaluated using three automated machine learning algorithms of linear discriminant analysis (LDA), extreme learning machine (ELM) and support vector machine (SVM) on two databases: the MIT PhysioNet database and the St. Vincent’s database. The results showed that the QRS area method for EDR estimation combined with the LDA classifier was the highest performing method and the EDR signals contain respiratory information useful for discriminating sleep apnoea. As a final step, heart rate variability (HRV) and cardiopulmonary coupling (CPC) features were extracted and combined with the EDR features and temporal optimisation techniques were applied. The cross-validation results of the minute-by-minute apnoea classification achieved an accuracy of 89%, a sensitivity of 90%, a specificity of 88%, and an AUC of 0.95 which is comparable to the best results reported in the literature

Novel Measurements of Cough and Breathing Abnormalities during Sleep in Cystic Fibrosis

This Doctor of Philosophy thesis describes cystic fibrosis (CF), sleep parameters and novel measurement techniques to determine the effect of lung disease on sleep using non-invasive techniques. Cystic Fibrosis (CF) is characterised by lungs that are normal at birth, but as lung disease progresses with age, adults with CF can develop sleep abnormalities including alteration in sleep architecture and sleep disordered breathing. This thesis seeks to investigate simple non-invasive measures which can detect abnormalities of sleep and breathing in CF adults. The identification of respiratory sounds (normal lung sounds, coughs, crackles, wheezes and snores) will be examined using the non-invasive sleep and breathing measurement device, the Sonomat. The characterisation of these respiratory sounds will be based on spectrographic and audio analysis of the Sonomat. Cross-sectional and longitudinal analysis of adults with CF using polysomnography and the Sonomat will further assess objective sleep and breathing abnormalities. Additional to the examination of objective measurements of sleep, subjective evaluation using CF-specific and sleep-specific questionnaires will assess subjective sleep quality and QoL in adults with CF

Models and Analysis of Vocal Emissions for Biomedical Applications

The International Workshop on Models and Analysis of Vocal Emissions for Biomedical Applications (MAVEBA) came into being in 1999 from the particularly felt need of sharing know-how, objectives and results between areas that until then seemed quite distinct such as bioengineering, medicine and singing. MAVEBA deals with all aspects concerning the study of the human voice with applications ranging from the neonate to the adult and elderly. Over the years the initial issues have grown and spread also in other aspects of research such as occupational voice disorders, neurology, rehabilitation, image and video analysis. MAVEBA takes place every two years always in Firenze, Italy. This edition celebrates twenty years of uninterrupted and succesfully research in the field of voice analysis