accelerating wrf i/o performance with adios2 and network-based streaming

With the approach of Exascale computing power for large-scale High Performance Computing (HPC) clusters, the gap between compute capabilities and storage systems is growing larger. This is particularly problematic for the Weather Research and Forecasting Model (WRF), a widely-used HPC application for high-resolution forecasting and research that produces sizable datasets, especially when analyzing transient weather phenomena. Despite this issue, the I/O modules within WRF have not been updated in the past ten years, resulting in subpar parallel I/O performance. This research paper demonstrates the positive impact of integrating ADIOS2, a next-generation parallel I/O framework, as a new I/O backend option in WRF. It goes into detail about the challenges encountered during the integration process and how they were addressed. The resulting I/O times show an over tenfold improvement when using ADIOS2 compared to traditional MPI-I/O based solutions. Furthermore, the study highlights the new features available to WRF users worldwide, such as the Sustainable Staging Transport (SST) enabling Unified Communication X (UCX) DataTransport, the node-local burst buffer write capabilities and in-line lossless compression capabilities of ADIOS2. Additionally, the research shows how ADIOS2's in-situ analysis capabilities can be smoothly integrated with a simple WRF forecasting pipeline, resulting in a significant improvement in overall time to solution. This study serves as a reminder to legacy HPC applications that incorporating modern libraries and tools can lead to considerable performance enhancements with minimal changes to the core application.Comment: arXiv admin note: text overlap with arXiv:2201.0822

Efficient algorithms for passive network measurement

Network monitoring has become a necessity to aid in the management and operation of large networks. Passive network monitoring consists of extracting metrics (or any information of interest) by analyzing the traffic that traverses one or more network links. Extracting information from a high-speed network link is challenging, given the great data volumes and short packet inter-arrival times. These difficulties can be alleviated by using extremely efficient algorithms or by sampling the incoming traffic. This work improves the state of the art in both these approaches. For one-way packet delay measurement, we propose a series of improvements over a recently appeared technique called Lossy Difference Aggregator. A main limitation of this technique is that it does not provide per-flow measurements. We propose a data structure called Lossy Difference Sketch that is capable of providing such per-flow delay measurements, and, unlike recent related works, does not rely on any model of packet delays. In the problem of collecting measurements under the sliding window model, we focus on the estimation of the number of active flows and in traffic filtering. Using a common approach, we propose one algorithm for each problem that obtains great accuracy with significant resource savings. In the traffic sampling area, the selection of the sampling rate is a crucial aspect. The most sensible approach involves dynamically adjusting sampling rates according to network traffic conditions, which is known as adaptive sampling. We propose an algorithm called Cuckoo Sampling that can operate with a fixed memory budget and perform adaptive flow-wise packet sampling. It is based on a very simple data structure and is computationally extremely lightweight. The techniques presented in this work are thoroughly evaluated through a combination of theoretical and experimental analysis.Postprint (published version

Towards Confident Body Sensor Networking

With the recent technology advances of wireless communication and lightweight low-power sensors, Body Sensor Network (BSN) is made possible. More and more researchers are interested in developing numerous novel BSN applications, such as remote health/fitness monitoring, military and sport training, interactive gaming, personal information sharing, and secure authentication. Despite the unstable wireless communication, various confidence requirements are placed on the BSN networking service. This thesis aims to provide Quality of Service (QoS) solutions for BSN communication, in order to achieve the required confidence goals.;We develop communication quality solutions to satisfy confidence requirements from both the communication and application levels, in single and multiple BSNs. First, we build communication QoS, targeting at providing service quality guarantees in terms of throughput and time delay on the communication level. More specifically, considering the heterogeneous BSN platform in a real deployment, we develop a radio-agnostic solution for wireless resource scheduling in the BSN. Second, we provide a QoS solution for both inter- and intra-BSN communications when more than one BSNs are involved. Third, we define application fidelity for two neurometric applications as examples, and bridge a connection between the communication QoS and application QoS

Towards Prescriptive Analytics in Cyber-Physical Systems

More and more of our physical world today is being monitored and controlled by so-called cyber-physical systems (CPSs). These are compositions of networked autonomous cyber and physical agents such as sensors, actuators, computational elements, and humans in the loop. Today, CPSs are still relatively small-scale and very limited compared to CPSs to be witnessed in the future. Future CPSs are expected to be far more complex, large-scale, wide-spread, and mission-critical, and found in a variety of domains such as transportation, medicine, manufacturing, and energy, where they will bring many advantages such as the increased efficiency, sustainability, reliability, and security. To unleash their full potential, CPSs need to be equipped with, among other features, the support for automated planning and control, where computing agents collaboratively and continuously plan and control their actions in an intelligent and well-coordinated manner to secure and optimize a physical process, e.g., electricity flow in the power grid. In today’s CPSs, the control is typically automated, but the planning is solely performed by humans. Unfortunately, it is intractable and infeasible for humans to plan every action in a future CPS due to the complexity, scale, and volatility of a physical process. Due to these properties, the control and planning has to be continuous and automated in future CPSs. Humans may only analyse and tweak the system’s operation using the set of tools supporting prescriptive analytics that allows them (1) to make predictions, (2) to get the suggestions of the most prominent set of actions (decisions) to be taken, and (3) to analyse the implications as if such actions were taken. This thesis considers the planning and control in the context of a large-scale multi-agent CPS. Based on the smart-grid use-case, it presents a so-called PrescriptiveCPS – which is (the conceptual model of) a multi-agent, multi-role, and multi-level CPS automatically and continuously taking and realizing decisions in near real-time and providing (human) users prescriptive analytics tools to analyse and manage the performance of the underlying physical system (or process). Acknowledging the complexity of CPSs, this thesis provides contributions at the following three levels of scale: (1) the level of a (full) PrescriptiveCPS, (2) the level of a single PrescriptiveCPS agent, and (3) the level of a component of a CPS agent software system. At the CPS level, the contributions include the definition of PrescriptiveCPS, according to which it is the system of interacting physical and cyber (sub-)systems. Here, the cyber system consists of hierarchically organized inter-connected agents, collectively managing instances of so-called flexibility, decision, and prescription models, which are short-lived, focus on the future, and represent a capability, an (user’s) intention, and actions to change the behaviour (state) of a physical system, respectively. At the agent level, the contributions include the three-layer architecture of an agent software system, integrating the number of components specially designed or enhanced to support the functionality of PrescriptiveCPS. At the component level, the most of the thesis contribution is provided. The contributions include the description, design, and experimental evaluation of (1) a unified multi-dimensional schema for storing flexibility and prescription models (and related data), (2) techniques to incrementally aggregate flexibility model instances and disaggregate prescription model instances, (3) a database management system (DBMS) with built-in optimization problem solving capability allowing to formulate optimization problems using SQL-like queries and to solve them “inside a database”, (4) a real-time data management architecture for processing instances of flexibility and prescription models under (soft or hard) timing constraints, and (5) a graphical user interface (GUI) to visually analyse the flexibility and prescription model instances. Additionally, the thesis discusses and exemplifies (but provides no evaluations of) (1) domain-specific and in-DBMS generic forecasting techniques allowing to forecast instances of flexibility models based on historical data, and (2) powerful ways to analyse past, current, and future based on so-called hypothetical what-if scenarios and flexibility and prescription model instances stored in a database. Most of the contributions at this level are based on the smart-grid use-case. In summary, the thesis provides (1) the model of a CPS with planning capabilities, (2) the design and experimental evaluation of prescriptive analytics techniques allowing to effectively forecast, aggregate, disaggregate, visualize, and analyse complex models of the physical world, and (3) the use-case from the energy domain, showing how the introduced concepts are applicable in the real world. We believe that all this contribution makes a significant step towards developing planning-capable CPSs in the future.Mehr und mehr wird heute unsere physische Welt überwacht und durch sogenannte Cyber-Physical-Systems (CPS) geregelt. Dies sind Kombinationen von vernetzten autonomen cyber und physischen Agenten wie Sensoren, Aktoren, Rechenelementen und Menschen. Heute sind CPS noch relativ klein und im Vergleich zu CPS der Zukunft sehr begrenzt. Zukünftige CPS werden voraussichtlich weit komplexer, größer, weit verbreiteter und unternehmenskritischer sein sowie in einer Vielzahl von Bereichen wie Transport, Medizin, Fertigung und Energie – in denen sie viele Vorteile wie erhöhte Effizienz, Nachhaltigkeit, Zuverlässigkeit und Sicherheit bringen – anzutreffen sein. Um ihr volles Potenzial entfalten zu können, müssen CPS unter anderem mit der Unterstützung automatisierter Planungs- und Steuerungsfunktionalität ausgestattet sein, so dass Agents ihre Aktionen gemeinsam und kontinuierlich auf intelligente und gut koordinierte Weise planen und kontrollieren können, um einen physischen Prozess wie den Stromfluss im Stromnetz sicherzustellen und zu optimieren. Zwar sind in den heutigen CPS Steuerung und Kontrolle typischerweise automatisiert, aber die Planung wird weiterhin allein von Menschen durchgeführt. Leider ist diese Aufgabe nur schwer zu bewältigen, und es ist für den Menschen schlicht unmöglich, jede Aktion in einem zukünftigen CPS auf Basis der Komplexität, des Umfangs und der Volatilität eines physikalischen Prozesses zu planen. Aufgrund dieser Eigenschaften müssen Steuerung und Planung in CPS der Zukunft kontinuierlich und automatisiert ablaufen. Der Mensch soll sich dabei ganz auf die Analyse und Einflussnahme auf das System mit Hilfe einer Reihe von Werkzeugen konzentrieren können. Derartige Werkzeuge erlauben (1) Vorhersagen, (2) Vorschläge der wichtigsten auszuführenden Aktionen (Entscheidungen) und (3) die Analyse und potentiellen Auswirkungen der zu fällenden Entscheidungen. Diese Arbeit beschäftigt sich mit der Planung und Kontrolle im Rahmen großer Multi-Agent-CPS. Basierend auf dem Smart-Grid als Anwendungsfall wird ein sogenanntes PrescriptiveCPS vorgestellt, welches einem Multi-Agent-, Multi-Role- und Multi-Level-CPS bzw. dessen konzeptionellem Modell entspricht. Diese PrescriptiveCPS treffen und realisieren automatisch und kontinuierlich Entscheidungen in naher Echtzeit und stellen Benutzern (Menschen) Prescriptive-Analytics-Werkzeuge und Verwaltung der Leistung der zugrundeliegenden physischen Systeme bzw. Prozesse zur Verfügung. In Anbetracht der Komplexität von CPS leistet diese Arbeit Beiträge auf folgenden Ebenen: (1) Gesamtsystem eines PrescriptiveCPS, (2) PrescriptiveCPS-Agenten und (3) Komponenten eines CPS-Agent-Software-Systems. Auf CPS-Ebene umfassen die Beiträge die Definition von PrescriptiveCPS als ein System von wechselwirkenden physischen und cyber (Sub-)Systemen. Das Cyber-System besteht hierbei aus hierarchisch organisierten verbundenen Agenten, die zusammen Instanzen sogenannter Flexibility-, Decision- und Prescription-Models verwalten, welche von kurzer Dauer sind, sich auf die Zukunft konzentrieren und Fähigkeiten, Absichten (des Benutzers) und Aktionen darstellen, die das Verhalten des physischen Systems verändern. Auf Agenten-Ebene umfassen die Beiträge die Drei-Ebenen-Architektur eines Agentensoftwaresystems sowie die Integration von Komponenten, die insbesondere zur besseren Unterstützung der Funktionalität von PrescriptiveCPS entwickelt wurden. Der Schwerpunkt dieser Arbeit bilden die Beiträge auf der Komponenten-Ebene, diese umfassen Beschreibung, Design und experimentelle Evaluation (1) eines einheitlichen multidimensionalen Schemas für die Speicherung von Flexibility- and Prescription-Models (und verwandten Daten), (2) der Techniken zur inkrementellen Aggregation von Instanzen eines Flexibilitätsmodells und Disaggregation von Prescription-Models, (3) eines Datenbankmanagementsystem (DBMS) mit integrierter Optimierungskomponente, die es erlaubt, Optimierungsprobleme mit Hilfe von SQL-ähnlichen Anfragen zu formulieren und sie „in einer Datenbank zu lösen“, (4) einer Echtzeit-Datenmanagementarchitektur zur Verarbeitung von Instanzen der Flexibility- and Prescription-Models unter (weichen oder harten) Zeitvorgaben und (5) einer grafische Benutzeroberfläche (GUI) zur Visualisierung und Analyse von Instanzen der Flexibility- and Prescription-Models. Darüber hinaus diskutiert und veranschaulicht diese Arbeit beispielhaft ohne detaillierte Evaluation (1) anwendungsspezifische und im DBMS integrierte Vorhersageverfahren, die die Vorhersage von Instanzen der Flexibility- and Prescription-Models auf Basis historischer Daten ermöglichen, und (2) leistungsfähige Möglichkeiten zur Analyse von Vergangenheit, Gegenwart und Zukunft auf Basis sogenannter hypothetischer „What-if“-Szenarien und der in der Datenbank hinterlegten Instanzen der Flexibility- and Prescription-Models. Die meisten der Beiträge auf dieser Ebene basieren auf dem Smart-Grid-Anwendungsfall. Zusammenfassend befasst sich diese Arbeit mit (1) dem Modell eines CPS mit Planungsfunktionen, (2) dem Design und der experimentellen Evaluierung von Prescriptive-Analytics-Techniken, die eine effektive Vorhersage, Aggregation, Disaggregation, Visualisierung und Analyse komplexer Modelle der physischen Welt ermöglichen und (3) dem Anwendungsfall der Energiedomäne, der zeigt, wie die vorgestellten Konzepte in der Praxis Anwendung finden. Wir glauben, dass diese Beiträge einen wesentlichen Schritt in der zukünftigen Entwicklung planender CPS darstellen.Mere og mere af vores fysiske verden bliver overvåget og kontrolleret af såkaldte cyber-fysiske systemer (CPSer). Disse er sammensætninger af netværksbaserede autonome IT (cyber) og fysiske (physical) agenter, såsom sensorer, aktuatorer, beregningsenheder, og mennesker. I dag er CPSer stadig forholdsvis små og meget begrænsede i forhold til de CPSer vi kan forvente i fremtiden. Fremtidige CPSer forventes at være langt mere komplekse, storstilede, udbredte, og missionskritiske, og vil kunne findes i en række områder såsom transport, medicin, produktion og energi, hvor de vil give mange fordele, såsom øget effektivitet, bæredygtighed, pålidelighed og sikkerhed. For at frigøre CPSernes fulde potentiale, skal de bl.a. udstyres med støtte til automatiseret planlægning og kontrol, hvor beregningsagenter i samspil og løbende planlægger og styrer deres handlinger på en intelligent og velkoordineret måde for at sikre og optimere en fysisk proces, såsom elforsyningen i elnettet. I nuværende CPSer er styringen typisk automatiseret, mens planlægningen udelukkende er foretaget af mennesker. Det er umuligt for mennesker at planlægge hver handling i et fremtidigt CPS på grund af kompleksiteten, skalaen, og omskifteligheden af en fysisk proces. På grund af disse egenskaber, skal kontrol og planlægning være kontinuerlig og automatiseret i fremtidens CPSer. Mennesker kan kun analysere og justere systemets drift ved hjælp af det sæt af værktøjer, der understøtter præskriptive analyser (prescriptive analytics), der giver dem mulighed for (1) at lave forudsigelser, (2) at få forslagene fra de mest fremtrædende sæt handlinger (beslutninger), der skal tages, og (3) at analysere konsekvenserne, hvis sådanne handlinger blev udført. Denne afhandling omhandler planlægning og kontrol i forbindelse med store multi-agent CPSer. Baseret på en smart-grid use case, præsenterer afhandlingen det såkaldte PrescriptiveCPS hvilket er (den konceptuelle model af) et multi-agent, multi-rolle, og multi-level CPS, der automatisk og kontinuerligt tager beslutninger i nær-realtid og leverer (menneskelige) brugere præskriptiveanalyseværktøjer til at analysere og håndtere det underliggende fysiske system (eller proces). I erkendelse af kompleksiteten af CPSer, giver denne afhandling bidrag til følgende tre niveauer: (1) niveauet for et (fuldt) PrescriptiveCPS, (2) niveauet for en enkelt PrescriptiveCPS agent, og (3) niveauet for en komponent af et CPS agent software system. På CPS-niveau, omfatter bidragene definitionen af PrescriptiveCPS, i henhold til hvilken det er det system med interagerende fysiske- og IT- (under-) systemer. Her består IT-systemet af hierarkisk organiserede forbundne agenter der sammen styrer instanser af såkaldte fleksibilitet (flexibility), beslutning (decision) og præskriptive (prescription) modeller, som henholdsvis er kortvarige, fokuserer på fremtiden, og repræsenterer en kapacitet, en (brugers) intention, og måder til at ændre adfærd (tilstand) af et fysisk system. På agentniveau omfatter bidragene en tre-lags arkitektur af et agent software system, der integrerer antallet af komponenter, der er specielt konstrueret eller udbygges til at understøtte funktionaliteten af PrescriptiveCPS. Komponentniveauet er hvor afhandlingen har sit hovedbidrag. Bidragene omfatter beskrivelse, design og eksperimentel evaluering af (1) et samlet multi- dimensionelt skema til at opbevare fleksibilitet og præskriptive modeller (og data), (2) teknikker til trinvis aggregering af fleksibilitet modelinstanser og disaggregering af præskriptive modelinstanser (3) et database management system (DBMS) med indbygget optimeringsproblemløsning (optimization problem solving) der gør det muligt at formulere optimeringsproblemer ved hjælp af SQL-lignende forespørgsler og at løse dem "inde i en database", (4) en realtids data management arkitektur til at behandle instanser af fleksibilitet og præskriptive modeller under (bløde eller hårde) tidsbegrænsninger, og (5) en grafisk brugergrænseflade (GUI) til visuelt at analysere fleksibilitet og præskriptive modelinstanser. Derudover diskuterer og eksemplificerer afhandlingen (men giver ingen evalueringer af) (1) domæne-specifikke og in-DBMS generiske prognosemetoder der gør det muligt at forudsige instanser af fleksibilitet modeller baseret på historiske data, og (2) kraftfulde måder at analysere tidligere-, nutids- og fremtidsbaserede såkaldte hypotetiske hvad-hvis scenarier og fleksibilitet og præskriptive modelinstanser gemt i en database. De fleste af bidragene på dette niveau er baseret på et smart-grid brugsscenarie. Sammenfattende giver afhandlingen (1) modellen for et CPS med planlægningsmulighed, (2) design og eksperimentel evaluering af præskriptive analyse teknikker der gør det muligt effektivt at forudsige, aggregere, disaggregere, visualisere og analysere komplekse modeller af den fysiske verden, og (3) brugsscenariet fra energiområdet, der viser, hvordan de indførte begreber kan anvendes i den virkelige verden. Vi mener, at dette bidrag udgør et betydeligt skridt i retning af at udvikle CPSer til planlægningsbrug i fremtiden

BATSEN: Modifying the BATMAN Routing Protocol for Wireless Sensor Networks

The proliferation of autonomous Wireless Sensor Networks (WSN) has spawned research seeking power efficient communications to improve the lifetime of sensor motes. WSNs are characterized by their power limitations, wireless transceivers, and the converge-cast communications techniques. WSN motes use low-power, lossy radio systems deployed in dense, random topologies, working sympathetically to sense and notify a sink node of the detectable information. In an effort to extend the life of battery powered motes, and hence the life of the network, various routing protocols have been suggested in an effort to optimize converge-cast delivery of sensor data. It is well known that reducing the overhead required to perform converge-cast routing and communications reduces the effects of the primary power drain in the mote, the transceiver. Furthermore, WSNs are not well protected; network security costs energy both in computation and in RF transmission. This paper investigates the use of a Mobile Ad-hoc Networking (MANET) routing protocol known as B.A.T.M.A.N. in WSN. This thesis proposes that the features of B.A.T.M.A.N. in the MANET realm may prove beneficial to the WSN routing domain; and that slight modifications to the routing technique may prove beneficial beyond current protocol technologies. The B.A.T.M.A.N. variant will be compared against the contemporary LEACH WSN routing protocol to discern any potential energy savings

Optimal Resource Allocation Using Deep Learning-Based Adaptive Compression For Mhealth Applications

In the last few years the number of patients with chronic diseases that require constant monitoring increases rapidly; which motivates the researchers to develop scalable remote health applications. Nevertheless, transmitting big real-time data through a dynamic network limited by the bandwidth, end-to-end delay and transmission energy; will be an obstacle against having an efficient transmission of the data. The problem can be resolved by applying data reduction techniques on the vital signs at the transmitter side and reconstructing the data at the receiver side (i.e. the m-Health center). However, a new problem will be introduced which is the ability to receive the vital signs at the server side with an acceptable distortion rate (i.e. deformation of vital signs because of inefficient data reduction). In this thesis, we integrate efficient data reduction with wireless networking to deliver an adaptive compression with an acceptable distortion, while reacting to the wireless network dynamics such as channel fading and user mobility. A Deep Learning (DL) approach was used to implement an adaptive compression technique to compress and reconstruct the vital signs in general and specifically the Electroencephalogram Signal (EEG) with the minimum distortion. Then, a resource allocation framework was introduced to minimize the transmission energy along with the distortion of the reconstructed signa

Security protocols suite for machine-to-machine systems

Nowadays, the great diffusion of advanced devices, such as smart-phones, has shown that there is a growing trend to rely on new technologies to generate and/or support progress; the society is clearly ready to trust on next-generation communication systems to face today’s concerns on economic and social fields. The reason for this sociological change is represented by the fact that the technologies have been open to all users, even if the latter do not necessarily have a specific knowledge in this field, and therefore the introduction of new user-friendly applications has now appeared as a business opportunity and a key factor to increase the general cohesion among all citizens. Within the actors of this technological evolution, wireless machine-to-machine (M2M) networks are becoming of great importance. These wireless networks are made up of interconnected low-power devices that are able to provide a great variety of services with little or even no user intervention. Examples of these services can be fleet management, fire detection, utilities consumption (water and energy distribution, etc.) or patients monitoring. However, since any arising technology goes together with its security threats, which have to be faced, further studies are necessary to secure wireless M2M technology. In this context, main threats are those related to attacks to the services availability and to the privacy of both the subscribers’ and the services providers’ data. Taking into account the often limited resources of the M2M devices at the hardware level, ensuring the availability and privacy requirements in the range of M2M applications while minimizing the waste of valuable resources is even more challenging. Based on the above facts, this Ph. D. thesis is aimed at providing efficient security solutions for wireless M2M networks that effectively reduce energy consumption of the network while not affecting the overall security services of the system. With this goal, we first propose a coherent taxonomy of M2M network that allows us to identify which security topics deserve special attention and which entities or specific services are particularly threatened. Second, we define an efficient, secure-data aggregation scheme that is able to increase the network lifetime by optimizing the energy consumption of the devices. Third, we propose a novel physical authenticator or frame checker that minimizes the communication costs in wireless channels and that successfully faces exhaustion attacks. Fourth, we study specific aspects of typical key management schemes to provide a novel protocol which ensures the distribution of secret keys for all the cryptographic methods used in this system. Fifth, we describe the collaboration with the WAVE2M community in order to define a proper frame format actually able to support the necessary security services, including the ones that we have already proposed; WAVE2M was funded to promote the global use of an emerging wireless communication technology for ultra-low and long-range services. And finally sixth, we provide with an accurate analysis of privacy solutions that actually fit M2M-networks services’ requirements. All the analyses along this thesis are corroborated by simulations that confirm significant improvements in terms of efficiency while supporting the necessary security requirements for M2M networks

Control of Multiple Remote Servers for Quality-Fair Delivery of Multimedia Contents

This paper proposes a control scheme for the quality-fair delivery of several encoded video streams to mobile users sharing a common wireless resource. Video quality fairness, as well as similar delivery delays are targeted among streams. The proposed controller is implemented within some aggregator located near the bottleneck of the network. The transmission rate among streams is adapted based on the quality of the already encoded and buffered packets in the aggregator. Encoding rate targets are evaluated by the aggregator and fed back to each remote video server (fully centralized solution), or directly evaluated by each server in a distributed way (partially distributed solution). Each encoding rate target is adjusted for each stream independently based on the corresponding buffer level or buffering delay in the aggregator. Communication delays between the servers and the aggregator are taken into account. The transmission and encoding rate control problems are studied with a control-theoretic perspective. The system is described with a multi-input multi-output model. Proportional Integral (PI) controllers are used to adjust the video quality and control the aggregator buffer levels. The system equilibrium and stability properties are studied. This provides guidelines for choosing the parameters of the PI controllers. Experimental results show the convergence of the proposed control system and demonstrate the improvement in video quality fairness compared to a classical transmission rate fair streaming solution and to a utility max-min fair approach