Model-driven Scheduling for Distributed Stream Processing Systems

Distributed Stream Processing frameworks are being commonly used with the evolution of Internet of Things(IoT). These frameworks are designed to adapt to the dynamic input message rate by scaling in/out.Apache Storm, originally developed by Twitter is a widely used stream processing engine while others includes Flink, Spark streaming. For running the streaming applications successfully there is need to know the optimal resource requirement, as over-estimation of resources adds extra cost.So we need some strategy to come up with the optimal resource requirement for a given streaming application. In this article, we propose a model-driven approach for scheduling streaming applications that effectively utilizes a priori knowledge of the applications to provide predictable scheduling behavior. Specifically, we use application performance models to offer reliable estimates of the resource allocation required. Further, this intuition also drives resource mapping, and helps narrow the estimated and actual dataflow performance and resource utilization. Together, this model-driven scheduling approach gives a predictable application performance and resource utilization behavior for executing a given DSPS application at a target input stream rate on distributed resources.Comment: 54 page

OpenAlea: Scientific Workflows Combining Data Analysis and Simulation

International audienceAnalyzing biological data (e.g., annotating genomes, assembling NGS data...) may involve very complex and inter-linked steps where several tools are combined together. Scientific workflow systems have reached a level of maturity that makes them able to support the design and execution of such in-silico experiments, and thus making them increasingly popular in the bioinformatics community. However, in some emerging application domains such as system biology, developmental biology or ecology, the need for data analysis is combined with the need to model complex multi-scale biological systems, possibly involving multiple simulation steps. This requires the scientific work-flow to deal with retro-action to understand and predict the relationships between structure and function of these complex systems. OpenAlea (openalea.gforge.inria.fr) is the only scientific workflow system able to uniformly address the problem, which made it successful in the scientific community. One of its main originality is to introduce higher-order dataflows as a means to uniformly combine classical data analysis with modeling and simulation. In this demonstration paper, we provide for the first time the description of the OpenAlea system involving an original combination of features. We illustrate the demonstration on a high-throughput workflow in phenotyping, phenomics, and environmental control designed to study the interplay between plant architecture and climatic change

Enhancing Energy Production with Exascale HPC Methods

High Performance Computing (HPC) resources have become the key actor for achieving more ambitious challenges in many disciplines. In this step beyond, an explosion on the available parallelism and the use of special purpose processors are crucial. With such a goal, the HPC4E project applies new exascale HPC techniques to energy industry simulations, customizing them if necessary, and going beyond the state-of-the-art in the required HPC exascale simulations for different energy sources. In this paper, a general overview of these methods is presented as well as some specific preliminary results.The research leading to these results has received funding from the European Union's Horizon 2020 Programme (2014-2020) under the HPC4E Project (www.hpc4e.eu), grant agreement n° 689772, the Spanish Ministry of Economy and Competitiveness under the CODEC2 project (TIN2015-63562-R), and from the Brazilian Ministry of Science, Technology and Innovation through Rede Nacional de Pesquisa (RNP). Computer time on Endeavour cluster is provided by the Intel Corporation, which enabled us to obtain the presented experimental results in uncertainty quantification in seismic imagingPostprint (author's final draft

Semantics-driven dataflow diagram processing.

Dataflow diagram is a commonly used tool of structured analysis and design techniques in specifications and design of a software system, and in analysis of an existing system as well. While automatic generating dataflow diagram saves system designers from tedious drawing and help them develop a new system, simulating dataflow diagrams provides system analysts with a dynamic graph and help them understand an existing system. CASE tools for dataflow diagrams play an important role in software engineering. Methodologies applied to the tools are dominant issues extensively evaluated by tools designers. Executable specifications with dataflow diagrams turn out an opportunity to execute graphic dataflow diagrams for systems analysts to simulate the behavior of a system. In this thesis, a syntax representation of dataflow diagram was developed, and a formal specification for dataflow diagram was established. A parser of this developed CASE tool translates the syntax representation of DFDs into their semantic representation. An interpreter of this tool then analyzes the DFDs semantic notations and builds a set of services of a system represented by the DFDs. This CASE tool can be used to simulate system behavior, check equivalence of two systems and detect deadlock. Based on its features, this tool can be used in every phase through entire software life cycle. Paper copy at Leddy Library: Theses & Major Papers - Basement, West Bldg. / Call Number: Thesis1998 .Z46. Source: Masters Abstracts International, Volume: 39-02, page: 0535. Adviser: Indra A. Tjandra. Thesis (M.Sc.)--University of Windsor (Canada), 1998

Compile-Time Query Optimization for Big Data Analytics

Many emerging programming environments for large-scale data analysis, such as Map-Reduce, Spark, and Flink, provide Scala-based APIs that consist of powerful higher-order operations that ease the development of complex data analysis applications. However, despite the simplicity of these APIs, many programmers prefer to use declarative languages, such as Hive and Spark SQL, to code their distributed applications. Unfortunately, most current data analysis query languages are based on the relational model and cannot effectively capture the rich data types and computations required for complex data analysis applications. Furthermore, these query languages are not well-integrated with the host programming language, as they are based on an incompatible data model. To address these shortcomings, we introduce a new query language for data-intensive scalable computing that is deeply embedded in Scala, called DIQL, and a query optimization framework that optimizes and translates DIQL queries to byte code at compile-time. In contrast to other query languages, our query embedding eliminates impedance mismatch as any Scala code can be seamlessly mixed with SQL-like syntax, without having to add any special declaration. DIQL supports nested collections and hierarchical data and allows query nesting at any place in a query. With DIQL, programmers can express complex data analysis tasks, such as PageRank and matrix factorization, using SQL-like syntax exclusively. The DIQL query optimizer uses algebraic transformations to derive all possible joins in a query, including those hidden across deeply nested queries, thus unnesting nested queries of any form and any number of nesting levels. The optimizer also uses general transformations to push down predicates before joins and to prune unneeded data across operations. DIQL has been implemented on three Big Data platforms, Apache Spark, Apache Flink, and Twitter's Cascading/Scalding, and has been shown to have competitive performance relative to Spark DataFrames and Spark SQL for some complex queries. This paper extends our previous work on embedded data-intensive query languages by describing the complete details of the formal framework and the query translation and optimization processes, and by providing more experimental results that give further evidence of the performance of our system

Elastic Dataflow Processing on the Cloud

Τα νεφη εχουν μετατραπει σε μια ελκυστικη πλατφορμα για την πολυπλοκη επεξεργασια δεδομενων μεγαλης κλιμακας, ειδικα εξαιτιας της εννοιας της ελαστικοτητας, η οποια και τα χαρακτηριζει: οι υπολογιστικοι ποροι μπορουν να εκμισθωθουν δυναμικα και να χρησιμοποιουνται για οσο χρονο ειναι απαραιτητο. Αυτο δινει την δυνατοτητα να δημιουργηθει μια εικονικη υποδομη η οποια μπορει να αλλαζει δυναμικα στο χρονο. Οι συγχρονες εφαρμογες απαιτουν την εκτελεση πολυπλοκων ερωτηματων σε Μεγαλα Δεδομενα για την εξορυξη γνωσης και την υποστηριξη επιχειρησιακων αποφασεων. Τα πολυπλοκα αυτα ερωτηματα, εκφραζονται σε γλωσσες υψηλου επιπεδου και τυπικα μεταφραζονται σε ροες επεξεργασιας δεδομενων, η απλα ροες δεδομενων. Ενα λογικο ερωτημα που τιθεται ειναι κατα ποσον η ελαστικοτητα επηρεαζει την εκτελεση των ροων δεδομενων και με πιο τροπο. Ειναι λογικο οτι η εκτελεση να ειναι πιθανον γρηγοροτερη αν χρησιμοποιηθουν περισ- σοτεροι υπολογιστικοι ποροι, αλλα το κοστος θα ειναι υψηλοτερο. Αυτο δημιουργει την εννοια της οικο-ελαστικοτητας, ενος επιπλεον τυπου ελαστικοτητας ο οποιος προερχεται απο την οικονο- μικη θεωρια, και συλλαμβανει τις εναλλακτικες μεταξυ του χρονου εκτελεσης και του χρηματικου κοστους οπως προκυπτει απο την χρηση των πορων. Στα πλαισια αυτης της διδακτορικης διατριβης, προσεγγιζουμε την ελαστικοτητα με ενα ενοποιημενο μοντελο που περιλαμβανει και τις δυο ειδων ελαστικοτητες που υπαρχουν στα υπολογιστικα νεφη. Αυτη η ενοποιημενη προσεγγιση της ελαστικοτητας ειναι πολυ σημαντικη στην σχεδιαση συστηματων που ρυθμιζονται αυτοματα (auto-tuned) σε περιβαλλοντα νεφους. Αρχικα δειχνουμε οτι η οικο-ελαστικοτητα υπαρχει σε αρκετους τυπους υπολογισμου που εμφανιζονται συχνα στην πραξη και οτι μπορει να βρεθει χρησιμοποιωντας εναν απλο, αλλα ταυτοχρονα αποδοτικο και ε- πεκτασιμο αλγοριθμο. Επειτα, παρουσιαζουμε δυο εφαρμογες που χρησιμοποιουν αλγοριθμους οι οποιοι χρησιμοποιουν το ενοποιημενο μοντελο ελαστικοτητας που προτεινουμε για να μπορουν να προσαρμοζουν δυναμικα το συστημα στα ερωτηματα της εισοδου: 1) την ελαστικη επεξεργασια αναλυτικων ερωτηματων τα οποια εχουν πλανα εκτελεσης με μορφη δεντρων με σκοπο την μεγι- στοποιηση του κερδους και 2) την αυτοματη διαχειριση χρησιμων ευρετηριων λαμβανοντας υποψη το χρηματικο κοστος των υπολογιστικων και των αποθηκευτικων πορων. Τελος, παρουσιαζουμε το EXAREME, ενα συστημα για την ελαστικη επεξεργασια μεγαλου ογκου δεδομενων στο νεφος το οποιο εχει χρησιμοποιηθει και επεκταθει σε αυτην την δουλεια. Το συστημα προσφερει δηλωτικες γλωσσες που βασιζονται στην SQL επεκταμενη με συναρτησεις οι οποιες μπορει να οριστουν απο χρηστες (User-Defined Functions, UDFs). Επιπλεον, το συντακτικο της γλωσσας εχει επεκταθει με στοιχεια παραλληλισμου. Το EXAREME εχει σχεδιαστει για να εκμεταλλευεται τις ελαστικοτη- τες που προσφερουν τα νεφη, δεσμευοντας και αποδεσμευοντας υπολογιστικους πορους δυναμικα με σκοπο την προσαρμογη στα ερωτηματα.Clouds have become an attractive platform for the large-scale processing of modern applications on Big Data, especially due to the concept of elasticity, which characterizes them: resources can be leased on demand and used for as much time as needed, offering the ability to create virtual infrastructures that change dynamically over time. Such applications often require processing of complex queries that are expressed in a high-level language and are typically transformed into data processing flows (dataflows). A logical question that arises is whether elasticity affects dataflow execution and in which way. It seems reasonable that the execution is faster when more resources are used, however the monetary cost is higher. This gives rise to the concept eco-elasticity, an additional kind of elasticity that comes from economics, and captures the trade-offs between the response time of the system and the amount of money we pay for it as influenced by the use of different amounts of resources. In this thesis, we approach the elasticity of clouds in a unified way that combines both the traditional notion and eco-elasticity. This unified elasticity concept is essential for the development of auto-tuned systems in cloud environments. First, we demonstrate that eco-elasticity exists in several common tasks that appear in practice and that can be discovered using a simple, yet highly scalable and efficient algorithm. Next, we present two cases of auto-tuned algorithms that use the unified model of elasticity in order to adapt to the query workload: 1) processing analytical queries in the form of tree execution plans in order to maximize profit and 2) automated index management taking into account compute and storage re- sources. Finally, we describe EXAREME, a system for elastic data processing on the cloud that has been used and extended in this work. The system offers declarative languages that are based on SQL with user-defined functions (UDFs) extended with parallelism primi- tives. EXAREME exploits both elasticities of clouds by dynamically allocating and deallocating compute resources in order to adapt to the query workload

Scalable and Declarative Information Extraction in a Parallel Data Analytics System

Informationsextraktions (IE) auf sehr großen Datenmengen erfordert hochkomplexe, skalierbare und anpassungsfähige Systeme. Obwohl zahlreiche IE-Algorithmen existieren, ist die nahtlose und erweiterbare Kombination dieser Werkzeuge in einem skalierbaren System immer noch eine große Herausforderung. In dieser Arbeit wird ein anfragebasiertes IE-System für eine parallelen Datenanalyseplattform vorgestellt, das für konkrete Anwendungsdomänen konfigurierbar ist und für Textsammlungen im Terabyte-Bereich skaliert. Zunächst werden konfigurierbare Operatoren für grundlegende IE- und Web-Analytics-Aufgaben definiert, mit denen komplexe IE-Aufgaben in Form von deklarativen Anfragen ausgedrückt werden können. Alle Operatoren werden hinsichtlich ihrer Eigenschaften charakterisiert um das Potenzial und die Bedeutung der Optimierung nicht-relationaler, benutzerdefinierter Operatoren (UDFs) für Data Flows hervorzuheben. Anschließend wird der Stand der Technik in der Optimierung nicht-relationaler Data Flows untersucht und herausgearbeitet, dass eine umfassende Optimierung von UDFs immer noch eine Herausforderung ist. Darauf aufbauend wird ein erweiterbarer, logischer Optimierer (SOFA) vorgestellt, der die Semantik von UDFs mit in die Optimierung mit einbezieht. SOFA analysiert eine kompakte Menge von Operator-Eigenschaften und kombiniert eine automatisierte Analyse mit manuellen UDF-Annotationen, um die umfassende Optimierung von Data Flows zu ermöglichen. SOFA ist in der Lage, beliebige Data Flows aus unterschiedlichen Anwendungsbereichen logisch zu optimieren, was zu erheblichen Laufzeitverbesserungen im Vergleich mit anderen Techniken führt. Als Viertes wird die Anwendbarkeit des vorgestellten Systems auf Korpora im Terabyte-Bereich untersucht und systematisch die Skalierbarkeit und Robustheit der eingesetzten Methoden und Werkzeuge beurteilt um schließlich die kritischsten Herausforderungen beim Aufbau eines IE-Systems für sehr große Datenmenge zu charakterisieren.Information extraction (IE) on very large data sets requires highly complex, scalable, and adaptive systems. Although numerous IE algorithms exist, their seamless and extensible combination in a scalable system still is a major challenge. This work presents a query-based IE system for a parallel data analysis platform, which is configurable for specific application domains and scales for terabyte-sized text collections. First, configurable operators are defined for basic IE and Web Analytics tasks, which can be used to express complex IE tasks in the form of declarative queries. All operators are characterized in terms of their properties to highlight the potential and importance of optimizing non-relational, user-defined operators (UDFs) for dataflows. Subsequently, we survey the state of the art in optimizing non-relational dataflows and highlight that a comprehensive optimization of UDFs is still a challenge. Based on this observation, an extensible, logical optimizer (SOFA) is introduced, which incorporates the semantics of UDFs into the optimization process. SOFA analyzes a compact set of operator properties and combines automated analysis with manual UDF annotations to enable a comprehensive optimization of data flows. SOFA is able to logically optimize arbitrary data flows from different application areas, resulting in significant runtime improvements compared to other techniques. Finally, the applicability of the presented system to terabyte-sized corpora is investigated. Hereby, we systematically evaluate scalability and robustness of the employed methods and tools in order to pinpoint the most critical challenges in building an IE system for very large data sets