Monte Carlo-based Noise Compensation in Coil Intensity Corrected Endorectal MRI

Background: Prostate cancer is one of the most common forms of cancer found in males making early diagnosis important. Magnetic resonance imaging (MRI) has been useful in visualizing and localizing tumor candidates and with the use of endorectal coils (ERC), the signal-to-noise ratio (SNR) can be improved. The coils introduce intensity inhomogeneities and the surface coil intensity correction built into MRI scanners is used to reduce these inhomogeneities. However, the correction typically performed at the MRI scanner level leads to noise amplification and noise level variations. Methods: In this study, we introduce a new Monte Carlo-based noise compensation approach for coil intensity corrected endorectal MRI which allows for effective noise compensation and preservation of details within the prostate. The approach accounts for the ERC SNR profile via a spatially-adaptive noise model for correcting non-stationary noise variations. Such a method is useful particularly for improving the image quality of coil intensity corrected endorectal MRI data performed at the MRI scanner level and when the original raw data is not available. Results: SNR and contrast-to-noise ratio (CNR) analysis in patient experiments demonstrate an average improvement of 11.7 dB and 11.2 dB respectively over uncorrected endorectal MRI, and provides strong performance when compared to existing approaches. Conclusions: A new noise compensation method was developed for the purpose of improving the quality of coil intensity corrected endorectal MRI data performed at the MRI scanner level. We illustrate that promising noise compensation performance can be achieved for the proposed approach, which is particularly important for processing coil intensity corrected endorectal MRI data performed at the MRI scanner level and when the original raw data is not available.Comment: 23 page

The Robo-AO-2 facility for rapid visible/near-infrared AO imaging and the demonstration of hybrid techniques

We are building a next-generation laser adaptive optics system, Robo-AO-2, for the UH 2.2-m telescope that will deliver robotic, diffraction-limited observations at visible and near-infrared wavelengths in unprecedented numbers. The superior Maunakea observing site, expanded spectral range and rapid response to high-priority events represent a significant advance over the prototype. Robo-AO-2 will include a new reconfigurable natural guide star sensor for exquisite wavefront correction on bright targets and the demonstration of potentially transformative hybrid AO techniques that promise to extend the faintness limit on current and future exoplanet adaptive optics systems.Comment: 15 page

Temporal phase unwrapping using deep learning

The multi-frequency temporal phase unwrapping (MF-TPU) method, as a classical phase unwrapping algorithm for fringe projection profilometry (FPP), is capable of eliminating the phase ambiguities even in the presence of surface discontinuities or spatially isolated objects. For the simplest and most efficient case, two sets of 3-step phase-shifting fringe patterns are used: the high-frequency one is for 3D measurement and the unit-frequency one is for unwrapping the phase obtained from the high-frequency pattern set. The final measurement precision or sensitivity is determined by the number of fringes used within the high-frequency pattern, under the precondition that the phase can be successfully unwrapped without triggering the fringe order error. Consequently, in order to guarantee a reasonable unwrapping success rate, the fringe number (or period number) of the high-frequency fringe patterns is generally restricted to about 16, resulting in limited measurement accuracy. On the other hand, using additional intermediate sets of fringe patterns can unwrap the phase with higher frequency, but at the expense of a prolonged pattern sequence. Inspired by recent successes of deep learning techniques for computer vision and computational imaging, in this work, we report that the deep neural networks can learn to perform TPU after appropriate training, as called deep-learning based temporal phase unwrapping (DL-TPU), which can substantially improve the unwrapping reliability compared with MF-TPU even in the presence of different types of error sources, e.g., intensity noise, low fringe modulation, and projector nonlinearity. We further experimentally demonstrate for the first time, to our knowledge, that the high-frequency phase obtained from 64-period 3-step phase-shifting fringe patterns can be directly and reliably unwrapped from one unit-frequency phase using DL-TPU

Automated near-field scanning algorithm for the EMC analysis of electronic devices

This paper presents an automated procedure to determine the electric ormagnetic near-field profile of electronic systems and devices in a given plane. It combines sequential sampling to determine the optimal coordinates of near-field scan points at arbitrary coordinates in the scanning plane. The effectiveness of the approach is illustrated by applying it to both a simulated and a measured printed circuit board example

Assessing the Viability of Complex Electrical Impedance Tomography (EIT) with a Spatially Distributed Sensor Array for Imaging of River Bed Morphology: a Proof of Concept (Study)

This report was produced as part of a NERC funded ‘Connect A’ project to establish a new collaborative partnership between the University of Worcester (UW) and Q-par Angus Ltd. The project aim was to assess the potential of using complex Electrical Impedance Tomography (EIT) to image river bed morphology. An assessment of the viability of sensors inserted vertically into the channel margins to provide real-time or near real-time monitoring of bed morphology is reported. Funding has enabled UW to carry out a literature review of the use of EIT and existing methods used for river bed surveys, and outline the requirements of potential end-users. Q-par Angus has led technical developments and assessed the viability of EIT for this purpose. EIT is one of a suite of tomographic imaging techniques and has already been used as an imaging tool for medical analysis, industrial processing and geophysical site survey work. The method uses electrodes placed on the margins or boundary of the entity being imaged, and a current is applied to some and measured on the remaining ones. Tomographic reconstruction uses algorithms to estimate the distribution of conductivity within the object and produce an image of this distribution from impedance measurements. The advantages of the use of EIT lie with the inherent simplicity, low cost and portability of the hardware, the high speed of data acquisition for real-time or near real-time monitoring, robust sensors, and the object being monitored is done so in a non-invasive manner. The need for sophisticated image reconstruction algorithms, and providing images with adequate spatial resolution are key challenges. A literature review of the use of EIT suggests that to date, despite its many other applications, to the best of our knowledge only one study has utilised EIT for river survey work (Sambuelli et al 2002). The Sambuelli (2002) study supported the notion that EIT may provide an innovative way of describing river bed morphology in a cost effective way. However this study used an invasive sensor array, and therefore the potential for using EIT in a non-invasive way in a river environment is still to be tested. A review of existing methods to monitor river bed morphology indicates that a plethora of techniques have been applied by a range of disciplines including fluvial geomorphology, ecology and engineering. However, none provide non-invasive, low costs assessments in real-time or near real-time. Therefore, EIT has the potential to meet the requirements of end users that no existing technique can accomplish. Work led by Q-par Angus Ltd. has assessed the technical requirements of the proposed approach, including probe design and deployment, sensor array parameters, data acquisition, image reconstruction and test procedure. Consequently, the success of this collaboration, literature review, identification of the proposed approach and potential applications of this technique have encouraged the authors to seek further funding to test, develop and market this approach through the development of a new environmental sensor

Optical techniques for 3D surface reconstruction in computer-assisted laparoscopic surgery

One of the main challenges for computer-assisted surgery (CAS) is to determine the intra-opera- tive morphology and motion of soft-tissues. This information is prerequisite to the registration of multi-modal patient-specific data for enhancing the surgeon’s navigation capabilites by observ- ing beyond exposed tissue surfaces and for providing intelligent control of robotic-assisted in- struments. In minimally invasive surgery (MIS), optical techniques are an increasingly attractive approach for in vivo 3D reconstruction of the soft-tissue surface geometry. This paper reviews the state-of-the-art methods for optical intra-operative 3D reconstruction in laparoscopic surgery and discusses the technical challenges and future perspectives towards clinical translation. With the recent paradigm shift of surgical practice towards MIS and new developments in 3D opti- cal imaging, this is a timely discussion about technologies that could facilitate complex CAS procedures in dynamic and deformable anatomical regions

Coil combination using linear deconvolution in k-space for phase imaging

Background: The combination of multi-channel data is a critical step for the imaging of phase and susceptibility contrast in magnetic resonance imaging (MRI). Magnitude-weighted phase combination methods often produce noise and aliasing artifacts in the magnitude images at accelerated imaging sceneries. To address this issue, an optimal coil combination method through deconvolution in k-space is proposed in this paper. Methods: The proposed method firstly employs the sum-of-squares and phase aligning method to yield a complex reference coil image which is then used to calculate the coil sensitivity and its Fourier transform. Then, the coil k-space combining weights is computed, taking into account the truncated frequency data of coil sensitivity and the acquired k-space data. Finally, combining the coil k-space data with the acquired weights generates the k-space data of proton distribution, with which both phase and magnitude information can be obtained straightforwardly. Both phantom and in vivo imaging experiments were conducted to evaluate the performance of the proposed method. Results: Compared with magnitude-weighted method and MCPC-C, the proposed method can alleviate the phase cancellation in coil combination, resulting in a less wrapped phase. Conclusions: The proposed method provides an effective and efficient approach to combine multiple coil image in parallel MRI reconstruction, and has potential to benefit routine clinical practice in the future