Unmanned Aerial Vehicles (UAVs) in environmental biology: A Review

Acquiring information about the environment is a key step during each study in the field of environmental biology at different levels, from an individual species to community and biome. However, obtaining information about the environment is frequently difficult because of, for example, the phenological timing, spatial distribution of a species or limited accessibility of a particular area for the field survey. Moreover, remote sensing technology, which enables the observation of the Earth’s surface and is currently very common in environmental research, has many limitations such as insufficient spatial, spectral and temporal resolution and a high cost of data acquisition. Since the 1990s, researchers have been exploring the potential of different types of unmanned aerial vehicles (UAVs) for monitoring Earth’s surface. The present study reviews recent scientific literature dealing with the use of UAV in environmental biology. Amongst numerous papers, short communications and conference abstracts, we selected 110 original studies of how UAVs can be used in environmental biology and which organisms can be studied in this manner. Most of these studies concerned the use of UAV to measure the vegetation parameters such as crown height, volume, number of individuals (14 studies) and quantification of the spatio-temporal dynamics of vegetation changes (12 studies). UAVs were also frequently applied to count birds and mammals, especially those living in the water. Generally, the analytical part of the present study was divided into following sections: (1) detecting, assessing and predicting threats on vegetation, (2) measuring the biophysical parameters of vegetation, (3) quantifying the dynamics of changes in plants and habitats and (4) population and behaviour studies of animals. At the end, we also synthesised all the information showing, amongst others, the advances in environmental biology because of UAV application. Considering that 33% of studies found and included in this review were published in 2017 and 2018, it is expected that the number and variety of applications of UAVs in environmental biology will increase in the future

UNMANNED AERIAL SYSTEMS (UAS) AS A TOOL FOR INVESTIGATING EDGE INFLUENCES IN NEW HAMPSHIRE FORESTS

The continued decline in forest cover across New England becomes more concerning when faced with the fact that these same forests may be playing an important role in the fight against climate change. New Hampshire, in particular, is experiencing a 0.27% annual net loss in forest cover as of 2018. Increased population growth and accompanied development has resulted in the removal of forest cover and the fragmentation of once continuous forest blocks. Fragmentation can lead to further degradation of the remaining forest stands via alterations of the biotic and abiotic process at their edges. The use of unmanned aerial systems (UAS) is becoming an important tool to ensure the sustainable management of current forests stands and may help to better understand the effects of fragmentation at forest edges. Because of the relatively recent arrival of this technology, effective and appropriate testing for accurate and efficient data collection is necessary. Furthermore, UAS have not been employed yet to detect edge effects.This research investigated the impacts of UAS flight parameters on the accuracy of canopy height estimates made from UAS data by comparing UAS estimates across twelve combinations of flying height and image overlap to ground measured canopy height. A multi-temporal approach to species level mapping with UAS imagery was tested by collecting multiple dates of UAS imagery from early spring to late summer and assessing whether the inclusion of one or more dates improved classification accuracy. Additional comparisons between RGB and multi-spectral cameras were carried out. Finally, UAS imagery was used to measure and assess the changes in canopy cover with increased distance from the edge. This trend was compared to trends in canopy cover measured on the ground. The results show that flying height had no impact of the accuracy of the height estimates made from UAS data and increasing forward image overlap resulted in a significant but minor increase in accuracy. Classification accuracy was improved with the use of multi-temporal data collection but no more than three dates of optimally timed imagery was necessary. Additionally, the RGB imagery produced maps with consistently higher accuracy than the multi-spectral sensor employed in this study. Finally, we were able to detect and measure a significant trend in canopy cover that mimicked the trends found on the ground. The results of the first two parts of this dissertation will go on to provide guidance to forestry practitioners on how to collect UAS that balances accuracy and efficiency, thus reducing project costs. The final result serves as an initial demonstration of utilizing UAS for understanding edge effects and opens the door to better understanding the impacts of fragmentation over larger areas

UNMANNED AERIAL SYSTEMS (UAS) AS A TOOL FOR INVESTIGATING EDGE INFLUENCES IN NEW HAMPSHIRE FORESTS

The continued decline in forest cover across New England becomes more concerning when faced with the fact that these same forests may be playing an important role in the fight against climate change. New Hampshire, in particular, is experiencing a 0.27% annual net loss in forest cover as of 2018. Increased population growth and accompanied development has resulted in the removal of forest cover and the fragmentation of once continuous forest blocks. Fragmentation can lead to further degradation of the remaining forest stands via alterations of the biotic and abiotic process at their edges. The use of unmanned aerial systems (UAS) is becoming an important tool to ensure the sustainable management of current forests stands and may help to better understand the effects of fragmentation at forest edges. Because of the relatively recent arrival of this technology, effective and appropriate testing for accurate and efficient data collection is necessary. Furthermore, UAS have not been employed yet to detect edge effects.This research investigated the impacts of UAS flight parameters on the accuracy of canopy height estimates made from UAS data by comparing UAS estimates across twelve combinations of flying height and image overlap to ground measured canopy height. A multi-temporal approach to species level mapping with UAS imagery was tested by collecting multiple dates of UAS imagery from early spring to late summer and assessing whether the inclusion of one or more dates improved classification accuracy. Additional comparisons between RGB and multi-spectral cameras were carried out. Finally, UAS imagery was used to measure and assess the changes in canopy cover with increased distance from the edge. This trend was compared to trends in canopy cover measured on the ground. The results show that flying height had no impact of the accuracy of the height estimates made from UAS data and increasing forward image overlap resulted in a significant but minor increase in accuracy. Classification accuracy was improved with the use of multi-temporal data collection but no more than three dates of optimally timed imagery was necessary. Additionally, the RGB imagery produced maps with consistently higher accuracy than the multi-spectral sensor employed in this study. Finally, we were able to detect and measure a significant trend in canopy cover that mimicked the trends found on the ground. The results of the first two parts of this dissertation will go on to provide guidance to forestry practitioners on how to collect UAS that balances accuracy and efficiency, thus reducing project costs. The final result serves as an initial demonstration of utilizing UAS for understanding edge effects and opens the door to better understanding the impacts of fragmentation over larger areas

Seeing the Forest for the Trees: Mapping Cover and Counting Trees from Aerial Images of a Mangrove Forest Using Artificial Intelligence

Mangrove forests provide valuable ecosystem services to coastal communities across tropical and subtropical regions. Current anthropogenic stressors threaten these ecosystems and urge researchers to create improved monitoring methods for better environmental management. Recent efforts that have focused on automatically quantifying the above-ground biomass using image analysis have found some success on high resolution imagery of mangrove forests that have sparse vegetation. In this study, we focus on stands of mangrove forests with dense vegetation consisting of the endemic Pelliciera rhizophorae and the more widespread Rhizophora mangle mangrove species located in the remote Utria National Park in the Colombian Pacific coast. Our developed workflow used consumer-grade Unoccupied Aerial System (UAS) imagery of the mangrove forests, from which large orthophoto mosaics and digital surface models are built. We apply convolutional neural networks (CNNs) for instance segmentation to accurately delineate (33% instance average precision) individual tree canopies for the Pelliciera rhizophorae species. We also apply CNNs for semantic segmentation to accurately identify (97% precision and 87% recall) the area coverage of the Rhizophora mangle mangrove tree species as well as the area coverage of surrounding mud and water land-cover classes. We provide a novel algorithm for merging predicted instance segmentation tiles of trees to recover tree shapes and sizes in overlapping border regions of tiles. Using the automatically segmented ground areas we interpolate their height from the digital surface model to generate a digital elevation model, significantly reducing the effort for ground pixel selection. Finally, we calculate a canopy height model from the digital surface and elevation models and combine it with the inventory of Pelliciera rhizophorae trees to derive the height of each individual mangrove tree. The resulting inventory of a mangrove forest, with individual P. rhizophorae tree height information, as well as crown shape and size descriptions, enables the use of allometric equations to calculate important monitoring metrics, such as above-ground biomass and carbon stocks

Forests

In this paper, we provide an overview of positioning systems for moving resources in forest and fire management and review the related literature. Emphasis is placed on the accuracy and range of different localization and location-sharing methods, particularly in forested environments and in the absence of conventional cellular or internet connectivity. We then conduct a second review of literature and concepts related to several emerging, broad themes in data science, including the terms |, |, |, |, |, |, and |. Our objective in this second review is to inform how these broader concepts, with implications for networking and analytics, may help to advance natural resource management and science in the future. Based on methods, themes, and concepts that arose in our systematic reviews, we then augmented the paper with additional literature from wildlife and fisheries management, as well as concepts from video object detection, relative positioning, and inventory-tracking that are also used as forms of localization. Based on our reviews of positioning technologies and emerging data science themes, we present a hierarchical model for collecting and sharing data in forest and fire management, and more broadly in the field of natural resources. The model reflects tradeoffs in range and bandwidth when recording, processing, and communicating large quantities of data in time and space to support resource management, science, and public safety in remote areas. In the hierarchical approach, wearable devices and other sensors typically transmit data at short distances using Bluetooth, Bluetooth Low Energy (BLE), or ANT wireless, and smartphones and tablets serve as intermediate data collection and processing hubs for information that can be subsequently transmitted using radio networking systems or satellite communication. Data with greater spatial and temporal complexity is typically processed incrementally at lower tiers, then fused and summarized at higher levels of incident command or resource management. Lastly, we outline several priority areas for future research to advance big data analytics in natural resources.U01 OH010841/OH/NIOSH CDC HHSUnited States/U54 OH007544/OH/NIOSH CDC HHSUnited States

Combination of UAV Photogrammetry and Field Inventories Enables Description of Height-Diameter Relationship within Semi-Arid Silvopastoral Systems

Pollarding oak trees is a traditional silvopastoral technique practiced across wide areas of the northern Zagros mountains, a unique and vast semi-arid forest area with a strong cultural and ecological significance. So far, the effects of pollarding on tree structure in terms of DBH (diameter at breast height)~H (height) relationships within the typical pollarding cycle, which often lasts 4 years, has not been scientifically described. Here, we combine field inventories of DBH with H obtained from photogrammetric UAV flights for the first time to assess DBH~H relationships within this system. We conducted the research at six pollarded forest sites throughout the Northern Zagros. The sampling encompassed all three main species of coppice oak trees. In the case of multi-stem trees, we used the maximum DBH of each tree that formed a unique crown. A linear relationship between UAV and extracted H and the maximum DBH of pollarded trees explained a notable part of the variation in maximum DBH (R2 = 0.56), and more complex and well-known nonlinear allometries were also evaluated, for which the accuracies were in the same range as the linear model. This relationship proved to be stable across oak species, and the pollarding stage had a notable effect on the DBH~H relationship. This finding is relevant for future attempts to inventory biomass using remote sensing approaches across larger areas in northern Zagros, as well as for general DBH estimations within stands dominated by pollarded, multi-stem coppice structures

Monitoring Fine-Scale Forest Health Using Unmanned Aerial Systems (UAS) Multispectral Models

Forest disturbances—driven by pests, pathogens, and discrete events—have led to billions of dollars in lost ecosystem services and management costs. To understand the patterns and severity of these stressors across complex landscapes, there must be an increase in reliable data at scales compatible with management actions. Unmanned aerial systems (UAS or UAV) offer a capable platform for collecting local scale (e.g., individual tree) forestry data. In this study, we evaluate the capability of UAS multispectral imagery and freely available National Agricultural Imagery Program (NAIP) imagery for differentiating coniferous healthy, coniferous stressed, deciduous healthy, deciduous stressed, and degraded individual trees throughout a complex, mixed-species forests. These methods are first compared to assessments of crown vigor in the field, to evaluate the potential in supplementing this resource intensive practice. This investigation uses the random forest and support vector machine (SVM) machine learning algorithms to classify the imagery into the five forest health classes. Using the random forest classifier, the UAS imagery correctly classified five forest Health classes with an overall accuracy of 65.43%. Using similar methods, the high-resolution airborne NAIP imagery achieved an overall accuracy of 50.50% for the five health classes, a reduction of 14.93%. When these classes were generalized to healthy, stressed, and degraded trees, the accuracy improved to 71.19%, using UAS imagery, and 70.62%, using airborne imagery. Further analysis into the precise calibration of UAS multispectral imagery, a refinement of image segmentation methods, and the fusion of these data with more widely distributed remotely sensed imagery would further enhance the potential of these methods to more effectively and efficiently collect forest health information from the UAS instead of using field methods

Consumer-grade UAV imagery facilitates semantic segmentation of species-rich savanna tree layers

Conventional forest inventories are labour-intensive. This limits the spatial extent and temporal frequency at which woody vegetation is usually monitored. Remote sensing provides cost-effective solutions that enable extensive spatial coverage and high sampling frequency. Recent studies indicate that convolutional neural networks (CNNs) can classify woody forests, plantations, and urban vegetation at the species level using consumer-grade unmanned aerial vehicle (UAV) imagery. However, whether such an approach is feasible in species-rich savanna ecosystems remains unclear. Here, we tested whether small data sets of high-resolution RGB orthomosaics suffice to train U-Net, FC-DenseNet, and DeepLabv3 + in semantic segmentation of savanna tree species. We trained these models on an 18-ha training area and explored whether models could be transferred across space and time. These models could recognise trees in adjacent (mean F1-Score = 0.68) and distant areas (mean F1-Score = 0.61) alike. Over time, a change in plant morphology resulted in a decrease of model accuracy. Our results show that CNN-based tree mapping using consumer-grade UAV imagery is possible in savanna ecosystems. Still, larger and more heterogeneous data sets can further improve model robustness to capture variation in plant morphology across time and space