GraphCombEx: A Software Tool for Exploration of Combinatorial Optimisation Properties of Large Graphs

We present a prototype of a software tool for exploration of multiple combinatorial optimisation problems in large real-world and synthetic complex networks. Our tool, called GraphCombEx (an acronym of Graph Combinatorial Explorer), provides a unified framework for scalable computation and presentation of high-quality suboptimal solutions and bounds for a number of widely studied combinatorial optimisation problems. Efficient representation and applicability to large-scale graphs and complex networks are particularly considered in its design. The problems currently supported include maximum clique, graph colouring, maximum independent set, minimum vertex clique covering, minimum dominating set, as well as the longest simple cycle problem. Suboptimal solutions and intervals for optimal objective values are estimated using scalable heuristics. The tool is designed with extensibility in mind, with the view of further problems and both new fast and high-performance heuristics to be added in the future. GraphCombEx has already been successfully used as a support tool in a number of recent research studies using combinatorial optimisation to analyse complex networks, indicating its promise as a research software tool

Simple Combinatorial Optimisation Cost Games

In this paper we introduce the class of simple combinatorial optimisation cost games, which are games associated to {0, 1}-matrices.A coalitional value of a combinatorial optimisation game is determined by solving an integer program associated with this matrix and the characteristic vector of the coalition.For this class of games, we will characterise core stability and totally balancedness.We continue by characterising exactness and largeness.Finally, we conclude the paper by applying our main results to minimum colouring games and minimum vertex cover games.Combinatorial optimisation game;core stability;totally balancedness;largeness;exactness

Molecular self-organisation in a developmental model for the evolution of large-scale artificial neural networks

We argue that molecular self-organisation during embryonic development allows evolution to perform highly nonlinear combinatorial optimisation. A structured approach to architectural optimisation of large-scale Artificial Neural Networks using this principle is presented. We also present simulation results demonstrating the evolution of an edge detecting retina using the proposed methodology

Local search: A guide for the information retrieval practitioner

There are a number of combinatorial optimisation problems in information retrieval in which the use of local search methods are worthwhile. The purpose of this paper is to show how local search can be used to solve some well known tasks in information retrieval (IR), how previous research in the field is piecemeal, bereft of a structure and methodologically flawed, and to suggest more rigorous ways of applying local search methods to solve IR problems. We provide a query based taxonomy for analysing the use of local search in IR tasks and an overview of issues such as fitness functions, statistical significance and test collections when conducting experiments on combinatorial optimisation problems. The paper gives a guide on the pitfalls and problems for IR practitioners who wish to use local search to solve their research issues, and gives practical advice on the use of such methods. The query based taxonomy is a novel structure which can be used by the IR practitioner in order to examine the use of local search in IR

Learning to Prune Instances of Steiner Tree Problem in Graphs

We consider the Steiner tree problem on graphs where we are given a set of nodes and the goal is to find a tree sub-graph of minimum weight that contains all nodes in the given set, potentially including additional nodes. This is a classical NP-hard combinatorial optimisation problem. In recent years, a machine learning framework called learning-to-prune has been successfully used for solving a diverse range of combinatorial optimisation problems. In this paper, we use this learning framework on the Steiner tree problem and show that even on this problem, the learning-to-prune framework results in computing near-optimal solutions at a fraction of the time required by commercial ILP solvers. Our results underscore the potential of the learning-to-prune framework in solving various combinatorial optimisation problems

On combinatorial optimisation in analysis of protein-protein interaction and protein folding networks

Abstract: Protein-protein interaction networks and protein folding networks represent prominent research topics at the intersection of bioinformatics and network science. In this paper, we present a study of these networks from combinatorial optimisation point of view. Using a combination of classical heuristics and stochastic optimisation techniques, we were able to identify several interesting combinatorial properties of biological networks of the COSIN project. We obtained optimal or near-optimal solutions to maximum clique and chromatic number problems for these networks. We also explore patterns of both non-overlapping and overlapping cliques in these networks. Optimal or near-optimal solutions to partitioning of these networks into non-overlapping cliques and to maximum independent set problem were discovered. Maximal cliques are explored by enumerative techniques. Domination in these networks is briefly studied, too. Applications and extensions of our findings are discussed

Simple Combinatorial Optimisation Cost Games

In this paper we introduce the class of simple combinatorial optimisation cost games, which are games associated to {0, 1}-matrices.A coalitional value of a combinatorial optimisation game is determined by solving an integer program associated with this matrix and the characteristic vector of the coalition.For this class of games, we will characterise core stability and totally balancedness.We continue by characterising exactness and largeness.Finally, we conclude the paper by applying our main results to minimum colouring games and minimum vertex cover games.

SimCrime: A Spatial Microsimulation Model for the Analysing of Crime in Leeds.

This Working Paper is a part of PhD thesis 'Modelling Crime: A Spatial Microsimulation Approach' which aims to investigate the potential of spatial microsimulation for modelling crime. This Working Paper presents SimCrime, a static spatial microsimulation model for crime in Leeds. It is designed to estimate the likelihood of being a victim of crime and crime rates at the small area level in Leeds and to answer what-if questions about the effects of changes in the demographic and socio-economic characteristics of the future population. The model is based on individual microdata. Specifically, SimCrime combines individual microdata from the British Crime Survey (BCS) for which location data is only at the scale of large areas, with census statistics for smaller areas to create synthetic microdata estimates for output areas ?(OAs) in Leeds using a simulated annealing method. The new microdata dataset includes all the attributes from the original datasets. This allows variables such as crime victimisation from the BCS to be directly estimated for OAs